Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-LUAD
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
0
1
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
10
Correlate_Clinical_vs_mRNA
0
0
0
1
0
11
Correlate_CopyNumber_vs_miR
0
0
0
1
0
12
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
13
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
14
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
15
miR_FindDirectTargets
0
0
0
1
0
16
miR_Mature_Clustering_CNMF
0
0
0
1
0
17
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
18
miR_Mature_Preprocess
0
0
0
1
0
19
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
20
mRNA_lincRNA_CNMF
0
0
0
1
0
21
mRNA_Preprocess
0
0
0
1
0
22
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
23
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
24
Mutation_CoOccurrence
1
0
0
0
0
25
Pathway_GSEA_mRNA
0
0
0
0
1
26
TR-Aggregate_AnalysisFeatures
0
0
0
1
0
27
TR-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
28
TR-CopyNumber_Clustering_CNMF
1
0
0
0
0
29
TR-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
30
TR-CopyNumber_Gistic2
0
0
0
1
0
31
TR-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
32
TR-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
33
TR-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
34
TR-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
35
TR-Correlate_Clinical_vs_mRNA
1
0
0
0
0
36
TR-Correlate_CopyNumber_vs_miR
1
0
0
0
0
37
TR-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
38
TR-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
39
TR-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
40
TR-miR_FindDirectTargets
1
0
0
0
0
41
TR-miR_Mature_Clustering_CNMF
1
0
0
0
0
42
TR-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
43
TR-miR_Mature_Preprocess
0
0
0
1
0
44
TR-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
45
TR-mRNA_lincRNA_CNMF
0
0
0
0
1
46
TR-mRNA_Preprocess
0
0
0
1
0
47
TR-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
48
TR-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
49
TR-Mutation_CoOccurrence
0
0
0
0
1
50
TR-Pathway_GSEA_mRNA
1
0
0
0
0
51
TP-Aggregate_AnalysisFeatures
0
0
0
0
1
52
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
53
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
54
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
55
TP-CopyNumber_Gistic2
0
0
0
1
0
56
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
57
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
58
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
59
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
60
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
61
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
62
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
63
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
64
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
65
TP-miR_FindDirectTargets
0
0
0
1
0
66
TP-miR_Mature_Clustering_CNMF
0
0
0
1
0
67
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
68
TP-miR_Mature_Preprocess
0
0
0
1
0
69
TP-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
70
TP-mRNA_lincRNA_CNMF
0
0
0
1
0
71
TP-mRNA_Preprocess
0
0
0
1
0
72
TP-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
73
TP-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
74
TP-Mutation_CoOccurrence
1
0
0
0
0
75
TP-Pathway_GSEA_mRNA
0
0
0
0
1
76
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
77
NT-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
78
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
79
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
80
NT-CopyNumber_Gistic2
0
0
0
0
1
81
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
82
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
83
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
84
NT-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
85
NT-Correlate_Clinical_vs_mRNA
0
0
0
1
0
86
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
87
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
88
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
89
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
90
NT-miR_FindDirectTargets
0
0
0
1
0
91
NT-miR_Mature_Clustering_CNMF
0
0
0
1
0
92
NT-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
93
NT-miR_Mature_Preprocess
0
0
0
1
0
94
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
95
NT-mRNA_lincRNA_CNMF
0
0
0
1
0
96
NT-mRNA_Preprocess
0
0
0
1
0
97
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
98
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
99
NT-Mutation_CoOccurrence
1
0
0
0
0
100
NT-Pathway_GSEA_mRNA
0
0
0
0
1
101
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
102
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
103
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
104
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
105
NB-CopyNumber_Gistic2
0
0
0
0
1
106
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
107
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
110
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
111
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
112
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
113
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
114
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
115
NB-miR_FindDirectTargets
1
0
0
0
0
116
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
117
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
118
NB-miR_Mature_Preprocess
1
0
0
0
0
119
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
120
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
121
NB-mRNA_Preprocess
1
0
0
0
0
122
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
123
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
124
NB-Mutation_CoOccurrence
1
0
0
0
0
125
NB-Pathway_GSEA_mRNA
1
0
0
0
0
Total
49
2
0
62
12
This table generated on Sat Nov 5 12:09:34 2016