Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-SKCM
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
0
1
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
10
Correlate_Clinical_vs_mRNA
0
0
0
1
0
11
Correlate_CopyNumber_vs_miR
0
0
0
1
0
12
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
13
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
14
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
15
miR_FindDirectTargets
0
0
0
1
0
16
miR_Mature_Clustering_CNMF
0
0
0
1
0
17
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
18
miR_Mature_Preprocess
0
0
0
1
0
19
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
20
mRNA_lincRNA_CNMF
0
0
0
1
0
21
mRNA_Preprocess
0
0
0
1
0
22
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
23
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
24
Mutation_CoOccurrence
1
0
0
0
0
25
Pathway_GSEA_mRNA
0
0
0
0
1
26
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
27
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
28
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
29
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
30
TP-CopyNumber_Gistic2
0
0
0
1
0
31
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
32
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
33
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
34
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
35
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
36
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
37
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
38
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
39
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
40
TP-miR_FindDirectTargets
0
0
0
1
0
41
TP-miR_Mature_Clustering_CNMF
0
0
0
1
0
42
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
43
TP-miR_Mature_Preprocess
0
0
0
1
0
44
TP-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
45
TP-mRNA_lincRNA_CNMF
0
0
0
1
0
46
TP-mRNA_Preprocess
0
0
0
1
0
47
TP-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
48
TP-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
49
TP-Mutation_CoOccurrence
0
0
0
1
0
50
TP-Pathway_GSEA_mRNA
0
0
0
0
1
51
TM-Aggregate_AnalysisFeatures
0
0
0
1
0
52
TM-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
53
TM-CopyNumber_Clustering_CNMF
0
0
0
1
0
54
TM-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
55
TM-CopyNumber_Gistic2
0
0
0
1
0
56
TM-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
57
TM-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
58
TM-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
59
TM-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
60
TM-Correlate_Clinical_vs_mRNA
0
0
0
1
0
61
TM-Correlate_CopyNumber_vs_miR
0
0
0
1
0
62
TM-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
63
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
64
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
65
TM-miR_FindDirectTargets
0
0
0
1
0
66
TM-miR_Mature_Clustering_CNMF
0
0
0
1
0
67
TM-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
68
TM-miR_Mature_Preprocess
0
0
0
1
0
69
TM-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
70
TM-mRNA_lincRNA_CNMF
0
0
0
1
0
71
TM-mRNA_Preprocess
0
0
0
1
0
72
TM-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
73
TM-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
74
TM-Mutation_CoOccurrence
0
0
0
1
0
75
TM-Pathway_GSEA_mRNA
0
0
0
0
1
76
TAM-Aggregate_AnalysisFeatures
0
0
0
0
1
77
TAM-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
78
TAM-CopyNumber_Clustering_CNMF
1
0
0
0
0
79
TAM-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
80
TAM-CopyNumber_Gistic2
1
0
0
0
0
81
TAM-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
82
TAM-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
83
TAM-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
84
TAM-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
85
TAM-Correlate_Clinical_vs_mRNA
1
0
0
0
0
86
TAM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
87
TAM-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
88
TAM-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
89
TAM-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
90
TAM-miR_FindDirectTargets
1
0
0
0
0
91
TAM-miR_Mature_Clustering_CNMF
1
0
0
0
0
92
TAM-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
93
TAM-miR_Mature_Preprocess
0
0
0
1
0
94
TAM-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
95
TAM-mRNA_lincRNA_CNMF
0
0
0
0
1
96
TAM-mRNA_Preprocess
0
0
0
1
0
97
TAM-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
98
TAM-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
99
TAM-Mutation_CoOccurrence
1
0
0
0
0
100
TAM-Pathway_GSEA_mRNA
1
0
0
0
0
101
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
102
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
103
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
104
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
105
NT-CopyNumber_Gistic2
0
0
0
0
1
106
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
107
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
110
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
111
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
112
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
113
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
114
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
115
NT-miR_FindDirectTargets
1
0
0
0
0
116
NT-miR_Mature_Clustering_CNMF
1
0
0
0
0
117
NT-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
118
NT-miR_Mature_Preprocess
0
0
0
1
0
119
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
120
NT-mRNA_lincRNA_CNMF
0
0
0
0
1
121
NT-mRNA_Preprocess
0
0
0
1
0
122
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
123
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
124
NT-Mutation_CoOccurrence
1
0
0
0
0
125
NT-Pathway_GSEA_mRNA
1
0
0
0
0
126
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
127
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
128
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
129
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
130
NB-CopyNumber_Gistic2
0
0
0
0
1
131
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
132
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
133
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
134
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
135
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
136
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
137
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
138
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
139
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
140
NB-miR_FindDirectTargets
1
0
0
0
0
141
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
142
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
143
NB-miR_Mature_Preprocess
1
0
0
0
0
144
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
145
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
146
NB-mRNA_Preprocess
1
0
0
0
0
147
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
148
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
149
NB-Mutation_CoOccurrence
1
0
0
0
0
150
NB-Pathway_GSEA_mRNA
1
0
0
0
0
Total
59
2
0
74
15
This table generated on Sat Nov 5 12:09:35 2016