Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-SKCM

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures00001
2Aggregate_Molecular_Subtype_Clusters00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_Clustering_CNMF_thresholded00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Molecular_Subtypes00010
10Correlate_Clinical_vs_mRNA00010
11Correlate_CopyNumber_vs_miR00010
12Correlate_CopyNumber_vs_mRNA00010
13Correlate_molecularSubtype_vs_CopyNumber_Arm00010
14Correlate_molecularSubtype_vs_CopyNumber_Focal00010
15miR_FindDirectTargets00010
16miR_Mature_Clustering_CNMF00010
17miR_Mature_Clustering_Consensus_Plus00010
18miR_Mature_Preprocess00010
19mRNA_lincRNA_Clustering_Consensus_Plus00010
20mRNA_lincRNA_CNMF00010
21mRNA_Preprocess00010
22mRNA_protein_coding_Clustering_CNMF00010
23mRNA_protein_coding_Clustering_Consensus_Plus00010
24Mutation_CoOccurrence10000
25Pathway_GSEA_mRNA00001
26TP-Aggregate_AnalysisFeatures00010
27TP-Aggregate_Molecular_Subtype_Clusters00010
28TP-CopyNumber_Clustering_CNMF00010
29TP-CopyNumber_Clustering_CNMF_thresholded00010
30TP-CopyNumber_Gistic200010
31TP-CopyNumber_Gistic2_Postprocess_Focal00010
32TP-Correlate_Clinical_vs_CopyNumber_Arm00010
33TP-Correlate_Clinical_vs_CopyNumber_Focal00010
34TP-Correlate_Clinical_vs_Molecular_Subtypes00010
35TP-Correlate_Clinical_vs_mRNA00010
36TP-Correlate_CopyNumber_vs_miR00010
37TP-Correlate_CopyNumber_vs_mRNA00010
38TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
39TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
40TP-miR_FindDirectTargets00010
41TP-miR_Mature_Clustering_CNMF00010
42TP-miR_Mature_Clustering_Consensus_Plus00010
43TP-miR_Mature_Preprocess00010
44TP-mRNA_lincRNA_Clustering_Consensus_Plus00010
45TP-mRNA_lincRNA_CNMF00010
46TP-mRNA_Preprocess00010
47TP-mRNA_protein_coding_Clustering_CNMF00010
48TP-mRNA_protein_coding_Clustering_Consensus_Plus00010
49TP-Mutation_CoOccurrence00010
50TP-Pathway_GSEA_mRNA00001
51TM-Aggregate_AnalysisFeatures00010
52TM-Aggregate_Molecular_Subtype_Clusters00010
53TM-CopyNumber_Clustering_CNMF00010
54TM-CopyNumber_Clustering_CNMF_thresholded00010
55TM-CopyNumber_Gistic200010
56TM-CopyNumber_Gistic2_Postprocess_Focal00010
57TM-Correlate_Clinical_vs_CopyNumber_Arm00010
58TM-Correlate_Clinical_vs_CopyNumber_Focal00010
59TM-Correlate_Clinical_vs_Molecular_Subtypes00010
60TM-Correlate_Clinical_vs_mRNA00010
61TM-Correlate_CopyNumber_vs_miR00010
62TM-Correlate_CopyNumber_vs_mRNA00010
63TM-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
64TM-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
65TM-miR_FindDirectTargets00010
66TM-miR_Mature_Clustering_CNMF00010
67TM-miR_Mature_Clustering_Consensus_Plus00010
68TM-miR_Mature_Preprocess00010
69TM-mRNA_lincRNA_Clustering_Consensus_Plus00010
70TM-mRNA_lincRNA_CNMF00010
71TM-mRNA_Preprocess00010
72TM-mRNA_protein_coding_Clustering_CNMF00010
73TM-mRNA_protein_coding_Clustering_Consensus_Plus00010
74TM-Mutation_CoOccurrence00010
75TM-Pathway_GSEA_mRNA00001
76TAM-Aggregate_AnalysisFeatures00001
77TAM-Aggregate_Molecular_Subtype_Clusters10000
78TAM-CopyNumber_Clustering_CNMF10000
79TAM-CopyNumber_Clustering_CNMF_thresholded10000
80TAM-CopyNumber_Gistic210000
81TAM-CopyNumber_Gistic2_Postprocess_Focal10000
82TAM-Correlate_Clinical_vs_CopyNumber_Arm10000
83TAM-Correlate_Clinical_vs_CopyNumber_Focal10000
84TAM-Correlate_Clinical_vs_Molecular_Subtypes10000
85TAM-Correlate_Clinical_vs_mRNA10000
86TAM-Correlate_CopyNumber_vs_miR10000
87TAM-Correlate_CopyNumber_vs_mRNA10000
88TAM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
89TAM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
90TAM-miR_FindDirectTargets10000
91TAM-miR_Mature_Clustering_CNMF10000
92TAM-miR_Mature_Clustering_Consensus_Plus10000
93TAM-miR_Mature_Preprocess00010
94TAM-mRNA_lincRNA_Clustering_Consensus_Plus00001
95TAM-mRNA_lincRNA_CNMF00001
96TAM-mRNA_Preprocess00010
97TAM-mRNA_protein_coding_Clustering_CNMF00001
98TAM-mRNA_protein_coding_Clustering_Consensus_Plus00001
99TAM-Mutation_CoOccurrence10000
100TAM-Pathway_GSEA_mRNA10000
101NT-Aggregate_AnalysisFeatures01000
102NT-Aggregate_Molecular_Subtype_Clusters10000
103NT-CopyNumber_Clustering_CNMF10000
104NT-CopyNumber_Clustering_CNMF_thresholded10000
105NT-CopyNumber_Gistic200001
106NT-CopyNumber_Gistic2_Postprocess_Focal10000
107NT-Correlate_Clinical_vs_CopyNumber_Arm10000
108NT-Correlate_Clinical_vs_CopyNumber_Focal10000
109NT-Correlate_Clinical_vs_Molecular_Subtypes10000
110NT-Correlate_Clinical_vs_mRNA10000
111NT-Correlate_CopyNumber_vs_miR10000
112NT-Correlate_CopyNumber_vs_mRNA10000
113NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
114NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
115NT-miR_FindDirectTargets10000
116NT-miR_Mature_Clustering_CNMF10000
117NT-miR_Mature_Clustering_Consensus_Plus10000
118NT-miR_Mature_Preprocess00010
119NT-mRNA_lincRNA_Clustering_Consensus_Plus00001
120NT-mRNA_lincRNA_CNMF00001
121NT-mRNA_Preprocess00010
122NT-mRNA_protein_coding_Clustering_CNMF00001
123NT-mRNA_protein_coding_Clustering_Consensus_Plus00001
124NT-Mutation_CoOccurrence10000
125NT-Pathway_GSEA_mRNA10000
126NB-Aggregate_AnalysisFeatures01000
127NB-Aggregate_Molecular_Subtype_Clusters10000
128NB-CopyNumber_Clustering_CNMF10000
129NB-CopyNumber_Clustering_CNMF_thresholded10000
130NB-CopyNumber_Gistic200001
131NB-CopyNumber_Gistic2_Postprocess_Focal10000
132NB-Correlate_Clinical_vs_CopyNumber_Arm10000
133NB-Correlate_Clinical_vs_CopyNumber_Focal10000
134NB-Correlate_Clinical_vs_Molecular_Subtypes10000
135NB-Correlate_Clinical_vs_mRNA10000
136NB-Correlate_CopyNumber_vs_miR10000
137NB-Correlate_CopyNumber_vs_mRNA10000
138NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
139NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
140NB-miR_FindDirectTargets10000
141NB-miR_Mature_Clustering_CNMF10000
142NB-miR_Mature_Clustering_Consensus_Plus10000
143NB-miR_Mature_Preprocess10000
144NB-mRNA_lincRNA_Clustering_Consensus_Plus10000
145NB-mRNA_lincRNA_CNMF10000
146NB-mRNA_Preprocess10000
147NB-mRNA_protein_coding_Clustering_CNMF10000
148NB-mRNA_protein_coding_Clustering_Consensus_Plus10000
149NB-Mutation_CoOccurrence10000
150NB-Pathway_GSEA_mRNA10000
Total59207415

This table generated on Sat Nov 5 12:09:35 2016