Broad GDAC Analyses Status
gdc_dev Run for Tumor Type: TCGA-THYM
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
0
0
1
0
2
Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
5
CopyNumber_Gistic2
0
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
9
Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
10
Correlate_Clinical_vs_mRNA
0
0
0
1
0
11
Correlate_CopyNumber_vs_miR
0
0
0
1
0
12
Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
13
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
14
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
15
miR_FindDirectTargets
0
0
0
1
0
16
miR_Mature_Clustering_CNMF
0
0
0
1
0
17
miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
18
miR_Mature_Preprocess
0
0
0
1
0
19
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
20
mRNA_lincRNA_CNMF
0
0
0
1
0
21
mRNA_Preprocess
0
0
0
1
0
22
mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
23
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
24
Mutation_CoOccurrence
0
0
0
0
1
25
Pathway_GSEA_mRNA
0
0
0
0
1
26
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
27
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
28
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
29
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
30
TP-CopyNumber_Gistic2
0
0
0
1
0
31
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
32
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
33
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
34
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
35
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
36
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
37
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
38
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
39
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
40
TP-miR_FindDirectTargets
0
0
0
1
0
41
TP-miR_Mature_Clustering_CNMF
0
0
0
1
0
42
TP-miR_Mature_Clustering_Consensus_Plus
0
0
0
1
0
43
TP-miR_Mature_Preprocess
0
0
0
1
0
44
TP-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
1
0
45
TP-mRNA_lincRNA_CNMF
0
0
0
1
0
46
TP-mRNA_Preprocess
0
0
0
1
0
47
TP-mRNA_protein_coding_Clustering_CNMF
0
0
0
1
0
48
TP-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
1
0
49
TP-Mutation_CoOccurrence
0
0
0
0
1
50
TP-Pathway_GSEA_mRNA
0
0
0
0
1
51
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
52
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
53
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
54
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
55
NT-CopyNumber_Gistic2
0
0
0
0
1
56
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
57
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
58
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
59
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
60
NT-Correlate_Clinical_vs_mRNA
0
0
0
0
1
61
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
62
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
63
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
64
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
65
NT-miR_FindDirectTargets
1
0
0
0
0
66
NT-miR_Mature_Clustering_CNMF
1
0
0
0
0
67
NT-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
68
NT-miR_Mature_Preprocess
0
0
0
1
0
69
NT-mRNA_lincRNA_Clustering_Consensus_Plus
0
0
0
0
1
70
NT-mRNA_lincRNA_CNMF
0
0
0
0
1
71
NT-mRNA_Preprocess
0
0
0
1
0
72
NT-mRNA_protein_coding_Clustering_CNMF
0
0
0
0
1
73
NT-mRNA_protein_coding_Clustering_Consensus_Plus
0
0
0
0
1
74
NT-Mutation_CoOccurrence
1
0
0
0
0
75
NT-Pathway_GSEA_mRNA
1
0
0
0
0
76
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
77
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
78
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
79
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
80
NB-CopyNumber_Gistic2
0
0
0
0
1
81
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
82
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
83
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
84
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
85
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
86
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
87
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
88
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
89
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
90
NB-miR_FindDirectTargets
1
0
0
0
0
91
NB-miR_Mature_Clustering_CNMF
1
0
0
0
0
92
NB-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
93
NB-miR_Mature_Preprocess
1
0
0
0
0
94
NB-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
95
NB-mRNA_lincRNA_CNMF
1
0
0
0
0
96
NB-mRNA_Preprocess
1
0
0
0
0
97
NB-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
98
NB-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
99
NB-Mutation_CoOccurrence
1
0
0
0
0
100
NB-Pathway_GSEA_mRNA
1
0
0
0
0
101
NBC-Aggregate_AnalysisFeatures
0
1
0
0
0
102
NBC-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
103
NBC-CopyNumber_Clustering_CNMF
1
0
0
0
0
104
NBC-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
105
NBC-CopyNumber_Gistic2
0
0
0
0
1
106
NBC-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
107
NBC-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
NBC-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
NBC-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
110
NBC-Correlate_Clinical_vs_mRNA
1
0
0
0
0
111
NBC-Correlate_CopyNumber_vs_miR
1
0
0
0
0
112
NBC-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
113
NBC-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
114
NBC-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
115
NBC-miR_FindDirectTargets
1
0
0
0
0
116
NBC-miR_Mature_Clustering_CNMF
1
0
0
0
0
117
NBC-miR_Mature_Clustering_Consensus_Plus
1
0
0
0
0
118
NBC-miR_Mature_Preprocess
1
0
0
0
0
119
NBC-mRNA_lincRNA_Clustering_Consensus_Plus
1
0
0
0
0
120
NBC-mRNA_lincRNA_CNMF
1
0
0
0
0
121
NBC-mRNA_Preprocess
1
0
0
0
0
122
NBC-mRNA_protein_coding_Clustering_CNMF
1
0
0
0
0
123
NBC-mRNA_protein_coding_Clustering_Consensus_Plus
1
0
0
0
0
124
NBC-Mutation_CoOccurrence
1
0
0
0
0
125
NBC-Pathway_GSEA_mRNA
1
0
0
0
0
Total
62
3
0
48
12
This table generated on Sat Nov 5 12:09:36 2016