Broad GDAC Analyses Status
integration Run for Tumor Type: BLCA

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
BLCA41241241011241204080409344130395

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures01000
2Aggregate_Gene_Status10000
3Aggregate_Molecular_Subtype_Clusters10000
4Append_CustomClinical01000
5CoMut2.010000
6CoMut2CV10000
7CoMutCV10000
8CopyNumber_Clustering_CNMF10000
9CopyNumber_Clustering_CNMF_thresholded10000
10CopyNumber_Gistic201000
11CopyNumber_Gistic2_Postprocess_Focal10000
12CopyNumberLowPass_Gistic201000
13Correlate_Clinical_vs_CopyNumber_Arm10000
14Correlate_Clinical_vs_CopyNumber_Focal10000
15Correlate_Clinical_vs_Methylation10000
16Correlate_Clinical_vs_miR10000
17Correlate_Clinical_vs_miRseq10000
18Correlate_Clinical_vs_Molecular_Subtypes10000
19Correlate_Clinical_vs_mRNA10000
20Correlate_Clinical_vs_mRNAseq10000
21Correlate_Clinical_vs_Mutation10000
22Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
23Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
24Correlate_Clinical_vs_MutationRate10000
25Correlate_Clinical_vs_RPPA10000
26Correlate_CopyNumber_vs_miR10000
27Correlate_CopyNumber_vs_mRNA10000
28Correlate_CopyNumber_vs_mRNAseq10000
29Correlate_Methylation_vs_mRNA01000
30Correlate_molecularSubtype_vs_CopyNumber_Arm10000
31Correlate_molecularSubtype_vs_CopyNumber_Focal10000
32Correlate_molecularSubtype_vs_Mutation10000
33Correlate_mRNAseq_vs_Mutation_APOBEC10000
34GenerateStickFigures2.010000
35GenerateStickFigures2CV10000
36GenerateStickFiguresCV10000
37iClusterPlus10000
38LegoPlotter2.010000
39LegoPlotter2CV10000
40LegoPlotterCV10000
41Methylation_Clustering_CNMF01000
42miR_Clustering_CNMF10000
43miR_Clustering_Consensus_Plus10000
44miR_FindDirectTargets10000
45miRseq_Clustering_CNMF01000
46miRseq_Clustering_Consensus_Plus01000
47miRseq_FindDirectTargets01000
48miRseq_Mature_Clustering_CNMF01000
49miRseq_Mature_Clustering_Consensus_Plus01000
50mRNA_Clustering_CNMF10000
51mRNA_Clustering_Consensus_Plus10000
52mRNAseq_Clustering_CNMF01000
53mRNAseq_Clustering_Consensus_Plus01000
54Mutation_APOBEC10000
55Mutation_Assessor10000
56Mutation_CHASM10000
57Mutation_CoOccurrence10000
58Mutation_CoOccurrence_Custom10000
59MutSigNozzleReport2.010000
60MutSigNozzleReport2CV10000
61MutSigNozzleReportCV10000
62MutSigPreprocess2.010000
63MutSigRun2.010000
64MutSigRun2CV10000
65MutSigRunCV10000
66Paradigm_mRNA10000
67Paradigm_mRNA_And_CopyNumber10000
68Paradigm_Prepare_mRNA10000
69Paradigm_Prepare_mRNA_And_Copy_Number10000
70Paradigm_Prepare_RNASeq10000
71Paradigm_Prepare_RNASeq_And_Copy_Number10000
72Paradigm_Preprocess_mRNA10000
73ParadigmPreprocess_mRNA10000
74Paradigm_Preprocess_mRNA_And_Copy_Number10000
75ParadigmPreprocess_RNASeq01000
76Paradigm_Preprocess_RNASeq10000
77Paradigm_Preprocess_RNASeq_And_Copy_Number10000
78Paradigm_Report_Preprocess_mRNA10000
79Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
80Paradigm_Report_Preprocess_RNASeq10000
81Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
82Paradigm_RNASeq10000
83Paradigm_RNASeq_And_Copy_Number10000
84Pathway_FindEnrichedGenes10000
85Pathway_GSEA_mRNAseq10000
86Pathway_Hotnet10000
87Pathway_Overlaps_MSigDB_MutSig2CV10000
88Pathway_Paradigm_mRNA10000
89Pathway_Paradigm_mRNA_And_Copy_Number10000
90Pathway_Paradigm_RNASeq10000
91Pathway_Paradigm_RNASeq_And_Copy_Number10000
92ProcessCoverageForMutSig2.010000
93RPPA_Clustering_CNMF01000
94RPPA_Clustering_Consensus_Plus01000
95TP-Aggregate_AnalysisFeatures00010
96TP-Aggregate_Gene_Status00010
97TP-Aggregate_Molecular_Subtype_Clusters00010
98TP-Append_CustomClinical00010
99TP-CoMut2.000010
100TP-CoMut2CV00010
101TP-CoMutCV00010
102TP-CopyNumber_Clustering_CNMF00010
103TP-CopyNumber_Clustering_CNMF_thresholded00010
104TP-CopyNumber_Gistic200010
105TP-CopyNumber_Gistic2_Postprocess_Focal00010
106TP-CopyNumberLowPass_Gistic200010
107TP-Correlate_Clinical_vs_CopyNumber_Arm00010
108TP-Correlate_Clinical_vs_CopyNumber_Focal00010
109TP-Correlate_Clinical_vs_Methylation00010
110TP-Correlate_Clinical_vs_miR10000
111TP-Correlate_Clinical_vs_miRseq00010
112TP-Correlate_Clinical_vs_Molecular_Subtypes00010
113TP-Correlate_Clinical_vs_mRNA10000
114TP-Correlate_Clinical_vs_mRNAseq00010
115TP-Correlate_Clinical_vs_Mutation00010
116TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical00010
117TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous00010
118TP-Correlate_Clinical_vs_MutationRate00010
119TP-Correlate_Clinical_vs_RPPA00010
120TP-Correlate_CopyNumber_vs_miR10000
121TP-Correlate_CopyNumber_vs_mRNA10000
122TP-Correlate_CopyNumber_vs_mRNAseq00010
123TP-Correlate_Methylation_vs_mRNA00010
124TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
125TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
126TP-Correlate_molecularSubtype_vs_Mutation00010
127TP-Correlate_mRNAseq_vs_Mutation_APOBEC00010
128TP-GenerateStickFigures2.000010
129TP-GenerateStickFigures2CV00010
130TP-GenerateStickFiguresCV00010
131TP-iClusterPlus00010
132TP-LegoPlotter2.000010
133TP-LegoPlotter2CV00010
134TP-LegoPlotterCV00010
135TP-Methylation_Clustering_CNMF00010
136TP-miR_Clustering_CNMF10000
137TP-miR_Clustering_Consensus_Plus10000
138TP-miR_FindDirectTargets10000
139TP-miRseq_Clustering_CNMF00010
140TP-miRseq_Clustering_Consensus_Plus00010
141TP-miRseq_FindDirectTargets00010
142TP-miRseq_Mature_Clustering_CNMF00010
143TP-miRseq_Mature_Clustering_Consensus_Plus00010
144TP-mRNA_Clustering_CNMF10000
145TP-mRNA_Clustering_Consensus_Plus10000
146TP-mRNAseq_Clustering_CNMF00010
147TP-mRNAseq_Clustering_Consensus_Plus00010
148TP-Mutation_APOBEC00010
149TP-Mutation_Assessor00010
150TP-Mutation_CHASM00010
151TP-Mutation_CoOccurrence00010
152TP-Mutation_CoOccurrence_Custom10000
153TP-MutSigNozzleReport2.000010
154TP-MutSigNozzleReport2CV00010
155TP-MutSigNozzleReportCV00010
156TP-MutSigPreprocess2.000010
157TP-MutSigRun2.000010
158TP-MutSigRun2CV00010
159TP-MutSigRunCV00010
160TP-Paradigm_mRNA10000
161TP-Paradigm_mRNA_And_CopyNumber10000
162TP-Paradigm_Prepare_mRNA10000
163TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
164TP-Paradigm_Prepare_RNASeq00010
165TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
166TP-Paradigm_Preprocess_mRNA10000
167TP-ParadigmPreprocess_mRNA10000
168TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
169TP-Paradigm_Preprocess_RNASeq00010
170TP-ParadigmPreprocess_RNASeq00010
171TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
172TP-Paradigm_Report_Preprocess_mRNA10000
173TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
174TP-Paradigm_Report_Preprocess_RNASeq00010
175TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
176TP-Paradigm_RNASeq00010
177TP-Paradigm_RNASeq_And_Copy_Number00010
178TP-Pathway_FindEnrichedGenes10000
179TP-Pathway_GSEA_mRNAseq00010
180TP-Pathway_Hotnet00001
181TP-Pathway_Overlaps_MSigDB_MutSig2CV00010
182TP-Pathway_Paradigm_mRNA10000
183TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
184TP-Pathway_Paradigm_RNASeq00010
185TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
186TP-ProcessCoverageForMutSig2.000010
187TP-RPPA_Clustering_CNMF00010
188TP-RPPA_Clustering_Consensus_Plus00010
189TM-Aggregate_AnalysisFeatures01000
190TM-Aggregate_Gene_Status10000
191TM-Aggregate_Molecular_Subtype_Clusters10000
192TM-Append_CustomClinical10000
193TM-CoMut2.010000
194TM-CoMut2CV10000
195TM-CoMutCV10000
196TM-CopyNumber_Clustering_CNMF10000
197TM-CopyNumber_Clustering_CNMF_thresholded10000
198TM-CopyNumber_Gistic201000
199TM-CopyNumber_Gistic2_Postprocess_Focal10000
200TM-CopyNumberLowPass_Gistic210000
201TM-Correlate_Clinical_vs_CopyNumber_Arm10000
202TM-Correlate_Clinical_vs_CopyNumber_Focal10000
203TM-Correlate_Clinical_vs_Methylation10000
204TM-Correlate_Clinical_vs_miR10000
205TM-Correlate_Clinical_vs_miRseq10000
206TM-Correlate_Clinical_vs_Molecular_Subtypes10000
207TM-Correlate_Clinical_vs_mRNA10000
208TM-Correlate_Clinical_vs_mRNAseq10000
209TM-Correlate_Clinical_vs_Mutation10000
210TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
211TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
212TM-Correlate_Clinical_vs_MutationRate10000
213TM-Correlate_Clinical_vs_RPPA10000
214TM-Correlate_CopyNumber_vs_miR10000
215TM-Correlate_CopyNumber_vs_mRNA10000
216TM-Correlate_CopyNumber_vs_mRNAseq10000
217TM-Correlate_Methylation_vs_mRNA10000
218TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
219TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
220TM-Correlate_molecularSubtype_vs_Mutation10000
221TM-Correlate_mRNAseq_vs_Mutation_APOBEC10000
222TM-GenerateStickFigures2.010000
223TM-GenerateStickFigures2CV10000
224TM-GenerateStickFiguresCV10000
225TM-iClusterPlus10000
226TM-LegoPlotter2.010000
227TM-LegoPlotter2CV10000
228TM-LegoPlotterCV10000
229TM-Methylation_Clustering_CNMF01000
230TM-miR_Clustering_CNMF10000
231TM-miR_Clustering_Consensus_Plus10000
232TM-miR_FindDirectTargets10000
233TM-miRseq_Clustering_CNMF10000
234TM-miRseq_Clustering_Consensus_Plus10000
235TM-miRseq_FindDirectTargets10000
236TM-miRseq_Mature_Clustering_CNMF10000
237TM-miRseq_Mature_Clustering_Consensus_Plus10000
238TM-mRNA_Clustering_CNMF10000
239TM-mRNA_Clustering_Consensus_Plus10000
240TM-mRNAseq_Clustering_CNMF10000
241TM-mRNAseq_Clustering_Consensus_Plus10000
242TM-Mutation_APOBEC10000
243TM-Mutation_Assessor10000
244TM-Mutation_CHASM10000
245TM-Mutation_CoOccurrence10000
246TM-Mutation_CoOccurrence_Custom10000
247TM-MutSigNozzleReport2.010000
248TM-MutSigNozzleReport2CV10000
249TM-MutSigNozzleReportCV10000
250TM-MutSigPreprocess2.010000
251TM-MutSigRun2.010000
252TM-MutSigRun2CV10000
253TM-MutSigRunCV10000
254TM-Paradigm_mRNA10000
255TM-Paradigm_mRNA_And_CopyNumber10000
256TM-Paradigm_Prepare_mRNA10000
257TM-Paradigm_Prepare_mRNA_And_Copy_Number10000
258TM-Paradigm_Prepare_RNASeq10000
259TM-Paradigm_Prepare_RNASeq_And_Copy_Number10000
260TM-Paradigm_Preprocess_mRNA10000
261TM-ParadigmPreprocess_mRNA10000
262TM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
263TM-Paradigm_Preprocess_RNASeq10000
264TM-ParadigmPreprocess_RNASeq10000
265TM-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
266TM-Paradigm_Report_Preprocess_mRNA10000
267TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
268TM-Paradigm_Report_Preprocess_RNASeq10000
269TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
270TM-Paradigm_RNASeq10000
271TM-Paradigm_RNASeq_And_Copy_Number10000
272TM-Pathway_FindEnrichedGenes10000
273TM-Pathway_GSEA_mRNAseq10000
274TM-Pathway_Hotnet10000
275TM-Pathway_Overlaps_MSigDB_MutSig2CV10000
276TM-Pathway_Paradigm_mRNA10000
277TM-Pathway_Paradigm_mRNA_And_Copy_Number10000
278TM-Pathway_Paradigm_RNASeq10000
279TM-Pathway_Paradigm_RNASeq_And_Copy_Number10000
280TM-ProcessCoverageForMutSig2.010000
281TM-RPPA_Clustering_CNMF10000
282TM-RPPA_Clustering_Consensus_Plus10000
283NT-Aggregate_AnalysisFeatures01000
284NT-Aggregate_Gene_Status10000
285NT-Aggregate_Molecular_Subtype_Clusters10000
286NT-Append_CustomClinical01000
287NT-CoMut2.010000
288NT-CoMut2CV10000
289NT-CoMutCV10000
290NT-CopyNumber_Clustering_CNMF10000
291NT-CopyNumber_Clustering_CNMF_thresholded10000
292NT-CopyNumber_Gistic201000
293NT-CopyNumber_Gistic2_Postprocess_Focal10000
294NT-CopyNumberLowPass_Gistic201000
295NT-Correlate_Clinical_vs_CopyNumber_Arm10000
296NT-Correlate_Clinical_vs_CopyNumber_Focal10000
297NT-Correlate_Clinical_vs_Methylation10000
298NT-Correlate_Clinical_vs_miR10000
299NT-Correlate_Clinical_vs_miRseq10000
300NT-Correlate_Clinical_vs_Molecular_Subtypes10000
301NT-Correlate_Clinical_vs_mRNA10000
302NT-Correlate_Clinical_vs_mRNAseq10000
303NT-Correlate_Clinical_vs_Mutation10000
304NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
305NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
306NT-Correlate_Clinical_vs_MutationRate10000
307NT-Correlate_Clinical_vs_RPPA10000
308NT-Correlate_CopyNumber_vs_miR10000
309NT-Correlate_CopyNumber_vs_mRNA10000
310NT-Correlate_CopyNumber_vs_mRNAseq10000
311NT-Correlate_Methylation_vs_mRNA01000
312NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
313NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
314NT-Correlate_molecularSubtype_vs_Mutation10000
315NT-Correlate_mRNAseq_vs_Mutation_APOBEC10000
316NT-GenerateStickFigures2.010000
317NT-GenerateStickFigures2CV10000
318NT-GenerateStickFiguresCV10000
319NT-iClusterPlus10000
320NT-LegoPlotter2.010000
321NT-LegoPlotter2CV10000
322NT-LegoPlotterCV10000
323NT-Methylation_Clustering_CNMF01000
324NT-miR_Clustering_CNMF10000
325NT-miR_Clustering_Consensus_Plus10000
326NT-miR_FindDirectTargets10000
327NT-miRseq_Clustering_CNMF01000
328NT-miRseq_Clustering_Consensus_Plus01000
329NT-miRseq_FindDirectTargets10000
330NT-miRseq_Mature_Clustering_CNMF10000
331NT-miRseq_Mature_Clustering_Consensus_Plus10000
332NT-mRNA_Clustering_CNMF10000
333NT-mRNA_Clustering_Consensus_Plus10000
334NT-mRNAseq_Clustering_CNMF01000
335NT-mRNAseq_Clustering_Consensus_Plus01000
336NT-Mutation_APOBEC10000
337NT-Mutation_Assessor10000
338NT-Mutation_CHASM10000
339NT-Mutation_CoOccurrence10000
340NT-Mutation_CoOccurrence_Custom10000
341NT-MutSigNozzleReport2.010000
342NT-MutSigNozzleReport2CV10000
343NT-MutSigNozzleReportCV10000
344NT-MutSigPreprocess2.010000
345NT-MutSigRun2.010000
346NT-MutSigRun2CV10000
347NT-MutSigRunCV10000
348NT-Paradigm_mRNA10000
349NT-Paradigm_mRNA_And_CopyNumber10000
350NT-Paradigm_Prepare_mRNA10000
351NT-Paradigm_Prepare_mRNA_And_Copy_Number10000
352NT-Paradigm_Prepare_RNASeq10000
353NT-Paradigm_Prepare_RNASeq_And_Copy_Number10000
354NT-Paradigm_Preprocess_mRNA10000
355NT-ParadigmPreprocess_mRNA10000
356NT-Paradigm_Preprocess_mRNA_And_Copy_Number10000
357NT-ParadigmPreprocess_RNASeq01000
358NT-Paradigm_Preprocess_RNASeq10000
359NT-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
360NT-Paradigm_Report_Preprocess_mRNA10000
361NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
362NT-Paradigm_Report_Preprocess_RNASeq10000
363NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
364NT-Paradigm_RNASeq10000
365NT-Paradigm_RNASeq_And_Copy_Number10000
366NT-Pathway_FindEnrichedGenes10000
367NT-Pathway_GSEA_mRNAseq10000
368NT-Pathway_Hotnet10000
369NT-Pathway_Overlaps_MSigDB_MutSig2CV10000
370NT-Pathway_Paradigm_mRNA10000
371NT-Pathway_Paradigm_mRNA_And_Copy_Number10000
372NT-Pathway_Paradigm_RNASeq10000
373NT-Pathway_Paradigm_RNASeq_And_Copy_Number10000
374NT-ProcessCoverageForMutSig2.010000
375NT-RPPA_Clustering_CNMF10000
376NT-RPPA_Clustering_Consensus_Plus10000
377NB-Aggregate_AnalysisFeatures01000
378NB-Aggregate_Gene_Status10000
379NB-Aggregate_Molecular_Subtype_Clusters10000
380NB-Append_CustomClinical01000
381NB-CoMut2.010000
382NB-CoMut2CV10000
383NB-CoMutCV10000
384NB-CopyNumber_Clustering_CNMF10000
385NB-CopyNumber_Clustering_CNMF_thresholded10000
386NB-CopyNumber_Gistic201000
387NB-CopyNumber_Gistic2_Postprocess_Focal10000
388NB-CopyNumberLowPass_Gistic201000
389NB-Correlate_Clinical_vs_CopyNumber_Arm10000
390NB-Correlate_Clinical_vs_CopyNumber_Focal10000
391NB-Correlate_Clinical_vs_Methylation10000
392NB-Correlate_Clinical_vs_miR10000
393NB-Correlate_Clinical_vs_miRseq10000
394NB-Correlate_Clinical_vs_Molecular_Subtypes10000
395NB-Correlate_Clinical_vs_mRNA10000
396NB-Correlate_Clinical_vs_mRNAseq10000
397NB-Correlate_Clinical_vs_Mutation10000
398NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
399NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
400NB-Correlate_Clinical_vs_MutationRate10000
401NB-Correlate_Clinical_vs_RPPA10000
402NB-Correlate_CopyNumber_vs_miR10000
403NB-Correlate_CopyNumber_vs_mRNA10000
404NB-Correlate_CopyNumber_vs_mRNAseq10000
405NB-Correlate_Methylation_vs_mRNA10000
406NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
407NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
408NB-Correlate_molecularSubtype_vs_Mutation10000
409NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
410NB-GenerateStickFigures2.010000
411NB-GenerateStickFigures2CV10000
412NB-GenerateStickFiguresCV10000
413NB-iClusterPlus10000
414NB-LegoPlotter2.010000
415NB-LegoPlotter2CV10000
416NB-LegoPlotterCV10000
417NB-Methylation_Clustering_CNMF10000
418NB-miR_Clustering_CNMF10000
419NB-miR_Clustering_Consensus_Plus10000
420NB-miR_FindDirectTargets10000
421NB-miRseq_Clustering_CNMF10000
422NB-miRseq_Clustering_Consensus_Plus10000
423NB-miRseq_FindDirectTargets10000
424NB-miRseq_Mature_Clustering_CNMF10000
425NB-miRseq_Mature_Clustering_Consensus_Plus10000
426NB-mRNA_Clustering_CNMF10000
427NB-mRNA_Clustering_Consensus_Plus10000
428NB-mRNAseq_Clustering_CNMF10000
429NB-mRNAseq_Clustering_Consensus_Plus10000
430NB-Mutation_APOBEC10000
431NB-Mutation_Assessor10000
432NB-Mutation_CHASM10000
433NB-Mutation_CoOccurrence10000
434NB-Mutation_CoOccurrence_Custom10000
435NB-MutSigNozzleReport2.010000
436NB-MutSigNozzleReport2CV10000
437NB-MutSigNozzleReportCV10000
438NB-MutSigPreprocess2.010000
439NB-MutSigRun2.010000
440NB-MutSigRun2CV10000
441NB-MutSigRunCV10000
442NB-Paradigm_mRNA10000
443NB-Paradigm_mRNA_And_CopyNumber10000
444NB-Paradigm_Prepare_mRNA10000
445NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
446NB-Paradigm_Prepare_RNASeq10000
447NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
448NB-Paradigm_Preprocess_mRNA10000
449NB-ParadigmPreprocess_mRNA10000
450NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
451NB-Paradigm_Preprocess_RNASeq10000
452NB-ParadigmPreprocess_RNASeq10000
453NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
454NB-Paradigm_Report_Preprocess_mRNA10000
455NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
456NB-Paradigm_Report_Preprocess_RNASeq10000
457NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
458NB-Paradigm_RNASeq10000
459NB-Paradigm_RNASeq_And_Copy_Number10000
460NB-Pathway_FindEnrichedGenes10000
461NB-Pathway_GSEA_mRNAseq10000
462NB-Pathway_Hotnet10000
463NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
464NB-Pathway_Paradigm_mRNA10000
465NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
466NB-Pathway_Paradigm_RNASeq10000
467NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
468NB-ProcessCoverageForMutSig2.010000
469NB-RPPA_Clustering_CNMF10000
470NB-RPPA_Clustering_Consensus_Plus10000
471FFPE-Aggregate_AnalysisFeatures01000
472FFPE-Aggregate_Gene_Status10000
473FFPE-Aggregate_Molecular_Subtype_Clusters10000
474FFPE-Append_CustomClinical10000
475FFPE-CoMut2.010000
476FFPE-CoMut2CV10000
477FFPE-CoMutCV10000
478FFPE-CopyNumber_Clustering_CNMF10000
479FFPE-CopyNumber_Clustering_CNMF_thresholded10000
480FFPE-CopyNumber_Gistic201000
481FFPE-CopyNumber_Gistic2_Postprocess_Focal10000
482FFPE-CopyNumberLowPass_Gistic210000
483FFPE-Correlate_Clinical_vs_CopyNumber_Arm10000
484FFPE-Correlate_Clinical_vs_CopyNumber_Focal10000
485FFPE-Correlate_Clinical_vs_Methylation10000
486FFPE-Correlate_Clinical_vs_miR10000
487FFPE-Correlate_Clinical_vs_miRseq10000
488FFPE-Correlate_Clinical_vs_Molecular_Subtypes10000
489FFPE-Correlate_Clinical_vs_mRNA10000
490FFPE-Correlate_Clinical_vs_mRNAseq10000
491FFPE-Correlate_Clinical_vs_Mutation10000
492FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
493FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
494FFPE-Correlate_Clinical_vs_MutationRate10000
495FFPE-Correlate_Clinical_vs_RPPA10000
496FFPE-Correlate_CopyNumber_vs_miR10000
497FFPE-Correlate_CopyNumber_vs_mRNA10000
498FFPE-Correlate_CopyNumber_vs_mRNAseq10000
499FFPE-Correlate_Methylation_vs_mRNA10000
500FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
501FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
502FFPE-Correlate_molecularSubtype_vs_Mutation10000
503FFPE-Correlate_mRNAseq_vs_Mutation_APOBEC10000
504FFPE-GenerateStickFigures2.010000
505FFPE-GenerateStickFigures2CV10000
506FFPE-GenerateStickFiguresCV10000
507FFPE-iClusterPlus10000
508FFPE-LegoPlotter2.010000
509FFPE-LegoPlotter2CV10000
510FFPE-LegoPlotterCV10000
511FFPE-Methylation_Clustering_CNMF01000
512FFPE-miR_Clustering_CNMF10000
513FFPE-miR_Clustering_Consensus_Plus10000
514FFPE-miR_FindDirectTargets10000
515FFPE-miRseq_Clustering_CNMF10000
516FFPE-miRseq_Clustering_Consensus_Plus10000
517FFPE-miRseq_FindDirectTargets10000
518FFPE-miRseq_Mature_Clustering_CNMF10000
519FFPE-miRseq_Mature_Clustering_Consensus_Plus10000
520FFPE-mRNA_Clustering_CNMF10000
521FFPE-mRNA_Clustering_Consensus_Plus10000
522FFPE-mRNAseq_Clustering_CNMF10000
523FFPE-mRNAseq_Clustering_Consensus_Plus10000
524FFPE-Mutation_APOBEC10000
525FFPE-Mutation_Assessor10000
526FFPE-Mutation_CHASM10000
527FFPE-Mutation_CoOccurrence10000
528FFPE-Mutation_CoOccurrence_Custom10000
529FFPE-MutSigNozzleReport2.010000
530FFPE-MutSigNozzleReport2CV10000
531FFPE-MutSigNozzleReportCV10000
532FFPE-MutSigPreprocess2.010000
533FFPE-MutSigRun2.010000
534FFPE-MutSigRun2CV10000
535FFPE-MutSigRunCV10000
536FFPE-Paradigm_mRNA10000
537FFPE-Paradigm_mRNA_And_CopyNumber10000
538FFPE-Paradigm_Prepare_mRNA10000
539FFPE-Paradigm_Prepare_mRNA_And_Copy_Number10000
540FFPE-Paradigm_Prepare_RNASeq10000
541FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number10000
542FFPE-Paradigm_Preprocess_mRNA10000
543FFPE-ParadigmPreprocess_mRNA10000
544FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number10000
545FFPE-Paradigm_Preprocess_RNASeq10000
546FFPE-ParadigmPreprocess_RNASeq10000
547FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
548FFPE-Paradigm_Report_Preprocess_mRNA10000
549FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
550FFPE-Paradigm_Report_Preprocess_RNASeq10000
551FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
552FFPE-Paradigm_RNASeq10000
553FFPE-Paradigm_RNASeq_And_Copy_Number10000
554FFPE-Pathway_FindEnrichedGenes10000
555FFPE-Pathway_GSEA_mRNAseq10000
556FFPE-Pathway_Hotnet10000
557FFPE-Pathway_Overlaps_MSigDB_MutSig2CV10000
558FFPE-Pathway_Paradigm_mRNA10000
559FFPE-Pathway_Paradigm_mRNA_And_Copy_Number10000
560FFPE-Pathway_Paradigm_RNASeq10000
561FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number10000
562FFPE-ProcessCoverageForMutSig2.010000
563FFPE-RPPA_Clustering_CNMF10000
564FFPE-RPPA_Clustering_Consensus_Plus10000
Total455370711

This table generated on Fri Jun 10 09:05:57 2016