Broad GDAC Analyses Status
integration Run for Tumor Type: CHOL

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
CHOL51363603603603630350

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures01000
2Aggregate_Gene_Status10000
3Aggregate_Molecular_Subtype_Clusters10000
4Append_CustomClinical01000
5CoMut2.010000
6CoMut2CV10000
7CoMutCV10000
8CopyNumber_Clustering_CNMF10000
9CopyNumber_Clustering_CNMF_thresholded10000
10CopyNumber_Gistic201000
11CopyNumber_Gistic2_Postprocess_Focal10000
12CopyNumberLowPass_Gistic210000
13Correlate_Clinical_vs_CopyNumber_Arm10000
14Correlate_Clinical_vs_CopyNumber_Focal10000
15Correlate_Clinical_vs_Methylation10000
16Correlate_Clinical_vs_miR10000
17Correlate_Clinical_vs_miRseq10000
18Correlate_Clinical_vs_Molecular_Subtypes10000
19Correlate_Clinical_vs_mRNA10000
20Correlate_Clinical_vs_mRNAseq10000
21Correlate_Clinical_vs_Mutation10000
22Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
23Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
24Correlate_Clinical_vs_MutationRate10000
25Correlate_Clinical_vs_RPPA10000
26Correlate_CopyNumber_vs_miR10000
27Correlate_CopyNumber_vs_mRNA10000
28Correlate_CopyNumber_vs_mRNAseq10000
29Correlate_Methylation_vs_mRNA01000
30Correlate_molecularSubtype_vs_CopyNumber_Arm10000
31Correlate_molecularSubtype_vs_CopyNumber_Focal10000
32Correlate_molecularSubtype_vs_Mutation10000
33Correlate_mRNAseq_vs_Mutation_APOBEC10000
34GenerateStickFigures2.010000
35GenerateStickFigures2CV10000
36GenerateStickFiguresCV10000
37iClusterPlus10000
38LegoPlotter2.010000
39LegoPlotter2CV10000
40LegoPlotterCV10000
41Methylation_Clustering_CNMF01000
42miR_Clustering_CNMF10000
43miR_Clustering_Consensus_Plus10000
44miR_FindDirectTargets10000
45miRseq_Clustering_CNMF01000
46miRseq_Clustering_Consensus_Plus01000
47miRseq_FindDirectTargets01000
48miRseq_Mature_Clustering_CNMF01000
49miRseq_Mature_Clustering_Consensus_Plus01000
50mRNA_Clustering_CNMF10000
51mRNA_Clustering_Consensus_Plus10000
52mRNAseq_Clustering_CNMF01000
53mRNAseq_Clustering_Consensus_Plus01000
54Mutation_APOBEC10000
55Mutation_Assessor10000
56Mutation_CHASM10000
57Mutation_CoOccurrence10000
58Mutation_CoOccurrence_Custom10000
59MutSigNozzleReport2.010000
60MutSigNozzleReport2CV10000
61MutSigNozzleReportCV10000
62MutSigPreprocess2.010000
63MutSigRun2.010000
64MutSigRun2CV10000
65MutSigRunCV10000
66Paradigm_mRNA10000
67Paradigm_mRNA_And_CopyNumber10000
68Paradigm_Prepare_mRNA10000
69Paradigm_Prepare_mRNA_And_Copy_Number10000
70Paradigm_Prepare_RNASeq10000
71Paradigm_Prepare_RNASeq_And_Copy_Number10000
72Paradigm_Preprocess_mRNA10000
73ParadigmPreprocess_mRNA10000
74Paradigm_Preprocess_mRNA_And_Copy_Number10000
75ParadigmPreprocess_RNASeq01000
76Paradigm_Preprocess_RNASeq10000
77Paradigm_Preprocess_RNASeq_And_Copy_Number10000
78Paradigm_Report_Preprocess_mRNA10000
79Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
80Paradigm_Report_Preprocess_RNASeq10000
81Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
82Paradigm_RNASeq10000
83Paradigm_RNASeq_And_Copy_Number10000
84Pathway_FindEnrichedGenes10000
85Pathway_GSEA_mRNAseq10000
86Pathway_Hotnet10000
87Pathway_Overlaps_MSigDB_MutSig2CV10000
88Pathway_Paradigm_mRNA10000
89Pathway_Paradigm_mRNA_And_Copy_Number10000
90Pathway_Paradigm_RNASeq10000
91Pathway_Paradigm_RNASeq_And_Copy_Number10000
92ProcessCoverageForMutSig2.010000
93RPPA_Clustering_CNMF01000
94RPPA_Clustering_Consensus_Plus01000
95TP-Aggregate_AnalysisFeatures00010
96TP-Aggregate_Gene_Status00010
97TP-Aggregate_Molecular_Subtype_Clusters00010
98TP-Append_CustomClinical00010
99TP-CoMut2.000010
100TP-CoMut2CV00010
101TP-CoMutCV00010
102TP-CopyNumber_Clustering_CNMF00010
103TP-CopyNumber_Clustering_CNMF_thresholded00010
104TP-CopyNumber_Gistic200010
105TP-CopyNumber_Gistic2_Postprocess_Focal00010
106TP-CopyNumberLowPass_Gistic210000
107TP-Correlate_Clinical_vs_CopyNumber_Arm00010
108TP-Correlate_Clinical_vs_CopyNumber_Focal00010
109TP-Correlate_Clinical_vs_Methylation00010
110TP-Correlate_Clinical_vs_miR10000
111TP-Correlate_Clinical_vs_miRseq00010
112TP-Correlate_Clinical_vs_Molecular_Subtypes00010
113TP-Correlate_Clinical_vs_mRNA10000
114TP-Correlate_Clinical_vs_mRNAseq00010
115TP-Correlate_Clinical_vs_Mutation00010
116TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
117TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
118TP-Correlate_Clinical_vs_MutationRate00010
119TP-Correlate_Clinical_vs_RPPA00010
120TP-Correlate_CopyNumber_vs_miR10000
121TP-Correlate_CopyNumber_vs_mRNA10000
122TP-Correlate_CopyNumber_vs_mRNAseq00010
123TP-Correlate_Methylation_vs_mRNA00010
124TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
125TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
126TP-Correlate_molecularSubtype_vs_Mutation00010
127TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
128TP-GenerateStickFigures2.000010
129TP-GenerateStickFigures2CV00010
130TP-GenerateStickFiguresCV00010
131TP-iClusterPlus00010
132TP-LegoPlotter2.000010
133TP-LegoPlotter2CV00010
134TP-LegoPlotterCV00010
135TP-Methylation_Clustering_CNMF00010
136TP-miR_Clustering_CNMF10000
137TP-miR_Clustering_Consensus_Plus10000
138TP-miR_FindDirectTargets10000
139TP-miRseq_Clustering_CNMF00010
140TP-miRseq_Clustering_Consensus_Plus00010
141TP-miRseq_FindDirectTargets00010
142TP-miRseq_Mature_Clustering_CNMF00010
143TP-miRseq_Mature_Clustering_Consensus_Plus00010
144TP-mRNA_Clustering_CNMF10000
145TP-mRNA_Clustering_Consensus_Plus10000
146TP-mRNAseq_Clustering_CNMF00010
147TP-mRNAseq_Clustering_Consensus_Plus00010
148TP-Mutation_APOBEC00010
149TP-Mutation_Assessor00010
150TP-Mutation_CHASM00010
151TP-Mutation_CoOccurrence00010
152TP-Mutation_CoOccurrence_Custom10000
153TP-MutSigNozzleReport2.000010
154TP-MutSigNozzleReport2CV00010
155TP-MutSigNozzleReportCV00010
156TP-MutSigPreprocess2.000010
157TP-MutSigRun2.000010
158TP-MutSigRun2CV00010
159TP-MutSigRunCV00010
160TP-Paradigm_mRNA10000
161TP-Paradigm_mRNA_And_CopyNumber10000
162TP-Paradigm_Prepare_mRNA10000
163TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
164TP-Paradigm_Prepare_RNASeq00010
165TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
166TP-Paradigm_Preprocess_mRNA10000
167TP-ParadigmPreprocess_mRNA10000
168TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
169TP-Paradigm_Preprocess_RNASeq00010
170TP-ParadigmPreprocess_RNASeq00010
171TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
172TP-Paradigm_Report_Preprocess_mRNA10000
173TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
174TP-Paradigm_Report_Preprocess_RNASeq00010
175TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
176TP-Paradigm_RNASeq00010
177TP-Paradigm_RNASeq_And_Copy_Number00010
178TP-Pathway_FindEnrichedGenes10000
179TP-Pathway_GSEA_mRNAseq00010
180TP-Pathway_Hotnet00001
181TP-Pathway_Overlaps_MSigDB_MutSig2CV00010
182TP-Pathway_Paradigm_mRNA10000
183TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
184TP-Pathway_Paradigm_RNASeq00010
185TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
186TP-ProcessCoverageForMutSig2.000010
187TP-RPPA_Clustering_CNMF00010
188TP-RPPA_Clustering_Consensus_Plus00010
189NT-Aggregate_AnalysisFeatures01000
190NT-Aggregate_Gene_Status10000
191NT-Aggregate_Molecular_Subtype_Clusters10000
192NT-Append_CustomClinical01000
193NT-CoMut2.010000
194NT-CoMut2CV10000
195NT-CoMutCV10000
196NT-CopyNumber_Clustering_CNMF10000
197NT-CopyNumber_Clustering_CNMF_thresholded10000
198NT-CopyNumber_Gistic201000
199NT-CopyNumber_Gistic2_Postprocess_Focal10000
200NT-CopyNumberLowPass_Gistic210000
201NT-Correlate_Clinical_vs_CopyNumber_Arm10000
202NT-Correlate_Clinical_vs_CopyNumber_Focal10000
203NT-Correlate_Clinical_vs_Methylation10000
204NT-Correlate_Clinical_vs_miR10000
205NT-Correlate_Clinical_vs_miRseq10000
206NT-Correlate_Clinical_vs_Molecular_Subtypes10000
207NT-Correlate_Clinical_vs_mRNA10000
208NT-Correlate_Clinical_vs_mRNAseq10000
209NT-Correlate_Clinical_vs_Mutation10000
210NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
211NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
212NT-Correlate_Clinical_vs_MutationRate10000
213NT-Correlate_Clinical_vs_RPPA10000
214NT-Correlate_CopyNumber_vs_miR10000
215NT-Correlate_CopyNumber_vs_mRNA10000
216NT-Correlate_CopyNumber_vs_mRNAseq10000
217NT-Correlate_Methylation_vs_mRNA10000
218NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
219NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
220NT-Correlate_molecularSubtype_vs_Mutation10000
221NT-Correlate_mRNAseq_vs_Mutation_APOBEC10000
222NT-GenerateStickFigures2.010000
223NT-GenerateStickFigures2CV10000
224NT-GenerateStickFiguresCV10000
225NT-iClusterPlus10000
226NT-LegoPlotter2.010000
227NT-LegoPlotter2CV10000
228NT-LegoPlotterCV10000
229NT-Methylation_Clustering_CNMF01000
230NT-miR_Clustering_CNMF10000
231NT-miR_Clustering_Consensus_Plus10000
232NT-miR_FindDirectTargets10000
233NT-miRseq_Clustering_CNMF10000
234NT-miRseq_Clustering_Consensus_Plus10000
235NT-miRseq_FindDirectTargets10000
236NT-miRseq_Mature_Clustering_CNMF10000
237NT-miRseq_Mature_Clustering_Consensus_Plus10000
238NT-mRNA_Clustering_CNMF10000
239NT-mRNA_Clustering_Consensus_Plus10000
240NT-mRNAseq_Clustering_CNMF10000
241NT-mRNAseq_Clustering_Consensus_Plus10000
242NT-Mutation_APOBEC10000
243NT-Mutation_Assessor10000
244NT-Mutation_CHASM10000
245NT-Mutation_CoOccurrence10000
246NT-Mutation_CoOccurrence_Custom10000
247NT-MutSigNozzleReport2.010000
248NT-MutSigNozzleReport2CV10000
249NT-MutSigNozzleReportCV10000
250NT-MutSigPreprocess2.010000
251NT-MutSigRun2.010000
252NT-MutSigRun2CV10000
253NT-MutSigRunCV10000
254NT-Paradigm_mRNA10000
255NT-Paradigm_mRNA_And_CopyNumber10000
256NT-Paradigm_Prepare_mRNA10000
257NT-Paradigm_Prepare_mRNA_And_Copy_Number10000
258NT-Paradigm_Prepare_RNASeq10000
259NT-Paradigm_Prepare_RNASeq_And_Copy_Number10000
260NT-Paradigm_Preprocess_mRNA10000
261NT-ParadigmPreprocess_mRNA10000
262NT-Paradigm_Preprocess_mRNA_And_Copy_Number10000
263NT-ParadigmPreprocess_RNASeq01000
264NT-Paradigm_Preprocess_RNASeq10000
265NT-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
266NT-Paradigm_Report_Preprocess_mRNA10000
267NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
268NT-Paradigm_Report_Preprocess_RNASeq10000
269NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
270NT-Paradigm_RNASeq10000
271NT-Paradigm_RNASeq_And_Copy_Number10000
272NT-Pathway_FindEnrichedGenes10000
273NT-Pathway_GSEA_mRNAseq10000
274NT-Pathway_Hotnet10000
275NT-Pathway_Overlaps_MSigDB_MutSig2CV10000
276NT-Pathway_Paradigm_mRNA10000
277NT-Pathway_Paradigm_mRNA_And_Copy_Number10000
278NT-Pathway_Paradigm_RNASeq10000
279NT-Pathway_Paradigm_RNASeq_And_Copy_Number10000
280NT-ProcessCoverageForMutSig2.010000
281NT-RPPA_Clustering_CNMF10000
282NT-RPPA_Clustering_Consensus_Plus10000
283NB-Aggregate_AnalysisFeatures01000
284NB-Aggregate_Gene_Status10000
285NB-Aggregate_Molecular_Subtype_Clusters10000
286NB-Append_CustomClinical01000
287NB-CoMut2.010000
288NB-CoMut2CV10000
289NB-CoMutCV10000
290NB-CopyNumber_Clustering_CNMF10000
291NB-CopyNumber_Clustering_CNMF_thresholded10000
292NB-CopyNumber_Gistic201000
293NB-CopyNumber_Gistic2_Postprocess_Focal10000
294NB-CopyNumberLowPass_Gistic210000
295NB-Correlate_Clinical_vs_CopyNumber_Arm10000
296NB-Correlate_Clinical_vs_CopyNumber_Focal10000
297NB-Correlate_Clinical_vs_Methylation10000
298NB-Correlate_Clinical_vs_miR10000
299NB-Correlate_Clinical_vs_miRseq10000
300NB-Correlate_Clinical_vs_Molecular_Subtypes10000
301NB-Correlate_Clinical_vs_mRNA10000
302NB-Correlate_Clinical_vs_mRNAseq10000
303NB-Correlate_Clinical_vs_Mutation10000
304NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
305NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
306NB-Correlate_Clinical_vs_MutationRate10000
307NB-Correlate_Clinical_vs_RPPA10000
308NB-Correlate_CopyNumber_vs_miR10000
309NB-Correlate_CopyNumber_vs_mRNA10000
310NB-Correlate_CopyNumber_vs_mRNAseq10000
311NB-Correlate_Methylation_vs_mRNA10000
312NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
313NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
314NB-Correlate_molecularSubtype_vs_Mutation10000
315NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
316NB-GenerateStickFigures2.010000
317NB-GenerateStickFigures2CV10000
318NB-GenerateStickFiguresCV10000
319NB-iClusterPlus10000
320NB-LegoPlotter2.010000
321NB-LegoPlotter2CV10000
322NB-LegoPlotterCV10000
323NB-Methylation_Clustering_CNMF10000
324NB-miR_Clustering_CNMF10000
325NB-miR_Clustering_Consensus_Plus10000
326NB-miR_FindDirectTargets10000
327NB-miRseq_Clustering_CNMF10000
328NB-miRseq_Clustering_Consensus_Plus10000
329NB-miRseq_FindDirectTargets10000
330NB-miRseq_Mature_Clustering_CNMF10000
331NB-miRseq_Mature_Clustering_Consensus_Plus10000
332NB-mRNA_Clustering_CNMF10000
333NB-mRNA_Clustering_Consensus_Plus10000
334NB-mRNAseq_Clustering_CNMF10000
335NB-mRNAseq_Clustering_Consensus_Plus10000
336NB-Mutation_APOBEC10000
337NB-Mutation_Assessor10000
338NB-Mutation_CHASM10000
339NB-Mutation_CoOccurrence10000
340NB-Mutation_CoOccurrence_Custom10000
341NB-MutSigNozzleReport2.010000
342NB-MutSigNozzleReport2CV10000
343NB-MutSigNozzleReportCV10000
344NB-MutSigPreprocess2.010000
345NB-MutSigRun2.010000
346NB-MutSigRun2CV10000
347NB-MutSigRunCV10000
348NB-Paradigm_mRNA10000
349NB-Paradigm_mRNA_And_CopyNumber10000
350NB-Paradigm_Prepare_mRNA10000
351NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
352NB-Paradigm_Prepare_RNASeq10000
353NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
354NB-Paradigm_Preprocess_mRNA10000
355NB-ParadigmPreprocess_mRNA10000
356NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
357NB-Paradigm_Preprocess_RNASeq10000
358NB-ParadigmPreprocess_RNASeq10000
359NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
360NB-Paradigm_Report_Preprocess_mRNA10000
361NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
362NB-Paradigm_Report_Preprocess_RNASeq10000
363NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
364NB-Paradigm_RNASeq10000
365NB-Paradigm_RNASeq_And_Copy_Number10000
366NB-Pathway_FindEnrichedGenes10000
367NB-Pathway_GSEA_mRNAseq10000
368NB-Pathway_Hotnet10000
369NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
370NB-Pathway_Paradigm_mRNA10000
371NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
372NB-Pathway_Paradigm_RNASeq10000
373NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
374NB-ProcessCoverageForMutSig2.010000
375NB-RPPA_Clustering_CNMF10000
376NB-RPPA_Clustering_Consensus_Plus10000
Total285230671

This table generated on Fri Jun 10 09:06:01 2016