Broad GDAC Analyses Status
integration Run for Tumor Type: DLBC

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
DLBC58484804803304733480

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures01000
2Aggregate_Gene_Status10000
3Aggregate_Molecular_Subtype_Clusters10000
4Append_CustomClinical01000
5CoMut2.010000
6CoMut2CV10000
7CoMutCV10000
8CopyNumber_Clustering_CNMF10000
9CopyNumber_Clustering_CNMF_thresholded10000
10CopyNumber_Gistic201000
11CopyNumber_Gistic2_Postprocess_Focal10000
12CopyNumberLowPass_Gistic210000
13Correlate_Clinical_vs_CopyNumber_Arm10000
14Correlate_Clinical_vs_CopyNumber_Focal10000
15Correlate_Clinical_vs_Methylation10000
16Correlate_Clinical_vs_miR10000
17Correlate_Clinical_vs_miRseq10000
18Correlate_Clinical_vs_Molecular_Subtypes10000
19Correlate_Clinical_vs_mRNA10000
20Correlate_Clinical_vs_mRNAseq10000
21Correlate_Clinical_vs_Mutation10000
22Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
23Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
24Correlate_Clinical_vs_MutationRate10000
25Correlate_Clinical_vs_RPPA10000
26Correlate_CopyNumber_vs_miR10000
27Correlate_CopyNumber_vs_mRNA10000
28Correlate_CopyNumber_vs_mRNAseq10000
29Correlate_Methylation_vs_mRNA01000
30Correlate_molecularSubtype_vs_CopyNumber_Arm10000
31Correlate_molecularSubtype_vs_CopyNumber_Focal10000
32Correlate_molecularSubtype_vs_Mutation10000
33Correlate_mRNAseq_vs_Mutation_APOBEC10000
34GenerateStickFigures2.010000
35GenerateStickFigures2CV10000
36GenerateStickFiguresCV10000
37iClusterPlus10000
38LegoPlotter2.010000
39LegoPlotter2CV10000
40LegoPlotterCV10000
41Methylation_Clustering_CNMF01000
42miR_Clustering_CNMF10000
43miR_Clustering_Consensus_Plus10000
44miR_FindDirectTargets10000
45miRseq_Clustering_CNMF01000
46miRseq_Clustering_Consensus_Plus01000
47miRseq_FindDirectTargets01000
48miRseq_Mature_Clustering_CNMF01000
49miRseq_Mature_Clustering_Consensus_Plus01000
50mRNA_Clustering_CNMF10000
51mRNA_Clustering_Consensus_Plus10000
52mRNAseq_Clustering_CNMF01000
53mRNAseq_Clustering_Consensus_Plus01000
54Mutation_APOBEC10000
55Mutation_Assessor10000
56Mutation_CHASM10000
57Mutation_CoOccurrence10000
58Mutation_CoOccurrence_Custom10000
59MutSigNozzleReport2.010000
60MutSigNozzleReport2CV10000
61MutSigNozzleReportCV10000
62MutSigPreprocess2.010000
63MutSigRun2.010000
64MutSigRun2CV10000
65MutSigRunCV10000
66Paradigm_mRNA10000
67Paradigm_mRNA_And_CopyNumber10000
68Paradigm_Prepare_mRNA10000
69Paradigm_Prepare_mRNA_And_Copy_Number10000
70Paradigm_Prepare_RNASeq10000
71Paradigm_Prepare_RNASeq_And_Copy_Number10000
72Paradigm_Preprocess_mRNA10000
73ParadigmPreprocess_mRNA10000
74Paradigm_Preprocess_mRNA_And_Copy_Number10000
75ParadigmPreprocess_RNASeq01000
76Paradigm_Preprocess_RNASeq10000
77Paradigm_Preprocess_RNASeq_And_Copy_Number10000
78Paradigm_Report_Preprocess_mRNA10000
79Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
80Paradigm_Report_Preprocess_RNASeq10000
81Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
82Paradigm_RNASeq10000
83Paradigm_RNASeq_And_Copy_Number10000
84Pathway_FindEnrichedGenes10000
85Pathway_GSEA_mRNAseq10000
86Pathway_Hotnet10000
87Pathway_Overlaps_MSigDB_MutSig2CV10000
88Pathway_Paradigm_mRNA10000
89Pathway_Paradigm_mRNA_And_Copy_Number10000
90Pathway_Paradigm_RNASeq10000
91Pathway_Paradigm_RNASeq_And_Copy_Number10000
92ProcessCoverageForMutSig2.010000
93RPPA_Clustering_CNMF01000
94RPPA_Clustering_Consensus_Plus01000
95TP-Aggregate_AnalysisFeatures00010
96TP-Aggregate_Gene_Status00010
97TP-Aggregate_Molecular_Subtype_Clusters00010
98TP-Append_CustomClinical00010
99TP-CoMut2.000010
100TP-CoMut2CV00010
101TP-CoMutCV00010
102TP-CopyNumber_Clustering_CNMF00010
103TP-CopyNumber_Clustering_CNMF_thresholded00010
104TP-CopyNumber_Gistic200010
105TP-CopyNumber_Gistic2_Postprocess_Focal00010
106TP-CopyNumberLowPass_Gistic210000
107TP-Correlate_Clinical_vs_CopyNumber_Arm00010
108TP-Correlate_Clinical_vs_CopyNumber_Focal00010
109TP-Correlate_Clinical_vs_Methylation00010
110TP-Correlate_Clinical_vs_miR10000
111TP-Correlate_Clinical_vs_miRseq00010
112TP-Correlate_Clinical_vs_Molecular_Subtypes00010
113TP-Correlate_Clinical_vs_mRNA10000
114TP-Correlate_Clinical_vs_mRNAseq00010
115TP-Correlate_Clinical_vs_Mutation00010
116TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
117TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
118TP-Correlate_Clinical_vs_MutationRate00010
119TP-Correlate_Clinical_vs_RPPA00010
120TP-Correlate_CopyNumber_vs_miR10000
121TP-Correlate_CopyNumber_vs_mRNA10000
122TP-Correlate_CopyNumber_vs_mRNAseq00010
123TP-Correlate_Methylation_vs_mRNA00010
124TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
125TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
126TP-Correlate_molecularSubtype_vs_Mutation00010
127TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
128TP-GenerateStickFigures2.000010
129TP-GenerateStickFigures2CV00010
130TP-GenerateStickFiguresCV00010
131TP-iClusterPlus00010
132TP-LegoPlotter2.000010
133TP-LegoPlotter2CV00010
134TP-LegoPlotterCV00010
135TP-Methylation_Clustering_CNMF00010
136TP-miR_Clustering_CNMF10000
137TP-miR_Clustering_Consensus_Plus10000
138TP-miR_FindDirectTargets10000
139TP-miRseq_Clustering_CNMF00010
140TP-miRseq_Clustering_Consensus_Plus00010
141TP-miRseq_FindDirectTargets00010
142TP-miRseq_Mature_Clustering_CNMF00010
143TP-miRseq_Mature_Clustering_Consensus_Plus00010
144TP-mRNA_Clustering_CNMF10000
145TP-mRNA_Clustering_Consensus_Plus10000
146TP-mRNAseq_Clustering_CNMF00010
147TP-mRNAseq_Clustering_Consensus_Plus00010
148TP-Mutation_APOBEC00010
149TP-Mutation_Assessor00010
150TP-Mutation_CHASM00010
151TP-Mutation_CoOccurrence00010
152TP-Mutation_CoOccurrence_Custom10000
153TP-MutSigNozzleReport2.000010
154TP-MutSigNozzleReport2CV00010
155TP-MutSigNozzleReportCV00010
156TP-MutSigPreprocess2.000010
157TP-MutSigRun2.000010
158TP-MutSigRun2CV00010
159TP-MutSigRunCV00010
160TP-Paradigm_mRNA10000
161TP-Paradigm_mRNA_And_CopyNumber10000
162TP-Paradigm_Prepare_mRNA10000
163TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
164TP-Paradigm_Prepare_RNASeq00010
165TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
166TP-Paradigm_Preprocess_mRNA10000
167TP-ParadigmPreprocess_mRNA10000
168TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
169TP-Paradigm_Preprocess_RNASeq00010
170TP-ParadigmPreprocess_RNASeq00010
171TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
172TP-Paradigm_Report_Preprocess_mRNA10000
173TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
174TP-Paradigm_Report_Preprocess_RNASeq00010
175TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
176TP-Paradigm_RNASeq00010
177TP-Paradigm_RNASeq_And_Copy_Number00010
178TP-Pathway_FindEnrichedGenes10000
179TP-Pathway_GSEA_mRNAseq00010
180TP-Pathway_Hotnet00001
181TP-Pathway_Overlaps_MSigDB_MutSig2CV00010
182TP-Pathway_Paradigm_mRNA10000
183TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
184TP-Pathway_Paradigm_RNASeq00010
185TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
186TP-ProcessCoverageForMutSig2.000010
187TP-RPPA_Clustering_CNMF00010
188TP-RPPA_Clustering_Consensus_Plus00010
189NB-Aggregate_AnalysisFeatures01000
190NB-Aggregate_Gene_Status10000
191NB-Aggregate_Molecular_Subtype_Clusters10000
192NB-Append_CustomClinical01000
193NB-CoMut2.010000
194NB-CoMut2CV10000
195NB-CoMutCV10000
196NB-CopyNumber_Clustering_CNMF10000
197NB-CopyNumber_Clustering_CNMF_thresholded10000
198NB-CopyNumber_Gistic201000
199NB-CopyNumber_Gistic2_Postprocess_Focal10000
200NB-CopyNumberLowPass_Gistic210000
201NB-Correlate_Clinical_vs_CopyNumber_Arm10000
202NB-Correlate_Clinical_vs_CopyNumber_Focal10000
203NB-Correlate_Clinical_vs_Methylation10000
204NB-Correlate_Clinical_vs_miR10000
205NB-Correlate_Clinical_vs_miRseq10000
206NB-Correlate_Clinical_vs_Molecular_Subtypes10000
207NB-Correlate_Clinical_vs_mRNA10000
208NB-Correlate_Clinical_vs_mRNAseq10000
209NB-Correlate_Clinical_vs_Mutation10000
210NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
211NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
212NB-Correlate_Clinical_vs_MutationRate10000
213NB-Correlate_Clinical_vs_RPPA10000
214NB-Correlate_CopyNumber_vs_miR10000
215NB-Correlate_CopyNumber_vs_mRNA10000
216NB-Correlate_CopyNumber_vs_mRNAseq10000
217NB-Correlate_Methylation_vs_mRNA10000
218NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
219NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
220NB-Correlate_molecularSubtype_vs_Mutation10000
221NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
222NB-GenerateStickFigures2.010000
223NB-GenerateStickFigures2CV10000
224NB-GenerateStickFiguresCV10000
225NB-iClusterPlus10000
226NB-LegoPlotter2.010000
227NB-LegoPlotter2CV10000
228NB-LegoPlotterCV10000
229NB-Methylation_Clustering_CNMF10000
230NB-miR_Clustering_CNMF10000
231NB-miR_Clustering_Consensus_Plus10000
232NB-miR_FindDirectTargets10000
233NB-miRseq_Clustering_CNMF10000
234NB-miRseq_Clustering_Consensus_Plus10000
235NB-miRseq_FindDirectTargets10000
236NB-miRseq_Mature_Clustering_CNMF10000
237NB-miRseq_Mature_Clustering_Consensus_Plus10000
238NB-mRNA_Clustering_CNMF10000
239NB-mRNA_Clustering_Consensus_Plus10000
240NB-mRNAseq_Clustering_CNMF10000
241NB-mRNAseq_Clustering_Consensus_Plus10000
242NB-Mutation_APOBEC10000
243NB-Mutation_Assessor10000
244NB-Mutation_CHASM10000
245NB-Mutation_CoOccurrence10000
246NB-Mutation_CoOccurrence_Custom10000
247NB-MutSigNozzleReport2.010000
248NB-MutSigNozzleReport2CV10000
249NB-MutSigNozzleReportCV10000
250NB-MutSigPreprocess2.010000
251NB-MutSigRun2.010000
252NB-MutSigRun2CV10000
253NB-MutSigRunCV10000
254NB-Paradigm_mRNA10000
255NB-Paradigm_mRNA_And_CopyNumber10000
256NB-Paradigm_Prepare_mRNA10000
257NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
258NB-Paradigm_Prepare_RNASeq10000
259NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
260NB-Paradigm_Preprocess_mRNA10000
261NB-ParadigmPreprocess_mRNA10000
262NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
263NB-Paradigm_Preprocess_RNASeq10000
264NB-ParadigmPreprocess_RNASeq10000
265NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
266NB-Paradigm_Report_Preprocess_mRNA10000
267NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
268NB-Paradigm_Report_Preprocess_RNASeq10000
269NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
270NB-Paradigm_RNASeq10000
271NB-Paradigm_RNASeq_And_Copy_Number10000
272NB-Pathway_FindEnrichedGenes10000
273NB-Pathway_GSEA_mRNAseq10000
274NB-Pathway_Hotnet10000
275NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
276NB-Pathway_Paradigm_mRNA10000
277NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
278NB-Pathway_Paradigm_RNASeq10000
279NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
280NB-ProcessCoverageForMutSig2.010000
281NB-RPPA_Clustering_CNMF10000
282NB-RPPA_Clustering_Consensus_Plus10000
283NBM-Aggregate_AnalysisFeatures01000
284NBM-Aggregate_Gene_Status10000
285NBM-Aggregate_Molecular_Subtype_Clusters10000
286NBM-Append_CustomClinical01000
287NBM-CoMut2.010000
288NBM-CoMut2CV10000
289NBM-CoMutCV10000
290NBM-CopyNumber_Clustering_CNMF10000
291NBM-CopyNumber_Clustering_CNMF_thresholded10000
292NBM-CopyNumber_Gistic201000
293NBM-CopyNumber_Gistic2_Postprocess_Focal10000
294NBM-CopyNumberLowPass_Gistic210000
295NBM-Correlate_Clinical_vs_CopyNumber_Arm10000
296NBM-Correlate_Clinical_vs_CopyNumber_Focal10000
297NBM-Correlate_Clinical_vs_Methylation10000
298NBM-Correlate_Clinical_vs_miR10000
299NBM-Correlate_Clinical_vs_miRseq10000
300NBM-Correlate_Clinical_vs_Molecular_Subtypes10000
301NBM-Correlate_Clinical_vs_mRNA10000
302NBM-Correlate_Clinical_vs_mRNAseq10000
303NBM-Correlate_Clinical_vs_Mutation10000
304NBM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
305NBM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
306NBM-Correlate_Clinical_vs_MutationRate10000
307NBM-Correlate_Clinical_vs_RPPA10000
308NBM-Correlate_CopyNumber_vs_miR10000
309NBM-Correlate_CopyNumber_vs_mRNA10000
310NBM-Correlate_CopyNumber_vs_mRNAseq10000
311NBM-Correlate_Methylation_vs_mRNA10000
312NBM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
313NBM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
314NBM-Correlate_molecularSubtype_vs_Mutation10000
315NBM-Correlate_mRNAseq_vs_Mutation_APOBEC10000
316NBM-GenerateStickFigures2.010000
317NBM-GenerateStickFigures2CV10000
318NBM-GenerateStickFiguresCV10000
319NBM-iClusterPlus10000
320NBM-LegoPlotter2.010000
321NBM-LegoPlotter2CV10000
322NBM-LegoPlotterCV10000
323NBM-Methylation_Clustering_CNMF10000
324NBM-miR_Clustering_CNMF10000
325NBM-miR_Clustering_Consensus_Plus10000
326NBM-miR_FindDirectTargets10000
327NBM-miRseq_Clustering_CNMF10000
328NBM-miRseq_Clustering_Consensus_Plus10000
329NBM-miRseq_FindDirectTargets10000
330NBM-miRseq_Mature_Clustering_CNMF10000
331NBM-miRseq_Mature_Clustering_Consensus_Plus10000
332NBM-mRNA_Clustering_CNMF10000
333NBM-mRNA_Clustering_Consensus_Plus10000
334NBM-mRNAseq_Clustering_CNMF10000
335NBM-mRNAseq_Clustering_Consensus_Plus10000
336NBM-Mutation_APOBEC10000
337NBM-Mutation_Assessor10000
338NBM-Mutation_CHASM10000
339NBM-Mutation_CoOccurrence10000
340NBM-Mutation_CoOccurrence_Custom10000
341NBM-MutSigNozzleReport2.010000
342NBM-MutSigNozzleReport2CV10000
343NBM-MutSigNozzleReportCV10000
344NBM-MutSigPreprocess2.010000
345NBM-MutSigRun2.010000
346NBM-MutSigRun2CV10000
347NBM-MutSigRunCV10000
348NBM-Paradigm_mRNA10000
349NBM-Paradigm_mRNA_And_CopyNumber10000
350NBM-Paradigm_Prepare_mRNA10000
351NBM-Paradigm_Prepare_mRNA_And_Copy_Number10000
352NBM-Paradigm_Prepare_RNASeq10000
353NBM-Paradigm_Prepare_RNASeq_And_Copy_Number10000
354NBM-Paradigm_Preprocess_mRNA10000
355NBM-ParadigmPreprocess_mRNA10000
356NBM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
357NBM-Paradigm_Preprocess_RNASeq10000
358NBM-ParadigmPreprocess_RNASeq10000
359NBM-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
360NBM-Paradigm_Report_Preprocess_mRNA10000
361NBM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
362NBM-Paradigm_Report_Preprocess_RNASeq10000
363NBM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
364NBM-Paradigm_RNASeq10000
365NBM-Paradigm_RNASeq_And_Copy_Number10000
366NBM-Pathway_FindEnrichedGenes10000
367NBM-Pathway_GSEA_mRNAseq10000
368NBM-Pathway_Hotnet10000
369NBM-Pathway_Overlaps_MSigDB_MutSig2CV10000
370NBM-Pathway_Paradigm_mRNA10000
371NBM-Pathway_Paradigm_mRNA_And_Copy_Number10000
372NBM-Pathway_Paradigm_RNASeq10000
373NBM-Pathway_Paradigm_RNASeq_And_Copy_Number10000
374NBM-ProcessCoverageForMutSig2.010000
375NBM-RPPA_Clustering_CNMF10000
376NBM-RPPA_Clustering_Consensus_Plus10000
Total287210671

This table generated on Fri Jun 10 09:06:04 2016