Broad GDAC Analyses Status
integration Run for Tumor Type: GBMLGG
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
GBMLGG
1129
1110
1090
52
936
567
516
565
512
668
576
803
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Gene_Status
1
0
0
0
0
3
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
4
Append_CustomClinical
0
1
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
10
CopyNumber_Gistic2
0
1
0
0
0
11
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
12
CopyNumberLowPass_Gistic2
0
1
0
0
0
13
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
15
Correlate_Clinical_vs_Methylation
1
0
0
0
0
16
Correlate_Clinical_vs_miR
1
0
0
0
0
17
Correlate_Clinical_vs_miRseq
1
0
0
0
0
18
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
19
Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
21
Correlate_Clinical_vs_Mutation
1
0
0
0
0
22
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
29
Correlate_Methylation_vs_mRNA
0
1
0
0
0
30
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
31
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
32
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
33
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
GenerateStickFigures2.0
1
0
0
0
0
35
GenerateStickFigures2CV
1
0
0
0
0
36
GenerateStickFiguresCV
1
0
0
0
0
37
iClusterPlus
1
0
0
0
0
38
LegoPlotter2.0
1
0
0
0
0
39
LegoPlotter2CV
1
0
0
0
0
40
LegoPlotterCV
1
0
0
0
0
41
Methylation_Clustering_CNMF
0
1
0
0
0
42
miR_Clustering_CNMF
0
1
0
0
0
43
miR_Clustering_Consensus_Plus
0
1
0
0
0
44
miR_FindDirectTargets
0
1
0
0
0
45
miRseq_Clustering_CNMF
0
1
0
0
0
46
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
47
miRseq_FindDirectTargets
0
1
0
0
0
48
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
49
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
50
mRNA_Clustering_CNMF
0
1
0
0
0
51
mRNA_Clustering_Consensus_Plus
0
1
0
0
0
52
mRNAseq_Clustering_CNMF
0
1
0
0
0
53
mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
54
Mutation_APOBEC
1
0
0
0
0
55
Mutation_Assessor
1
0
0
0
0
56
Mutation_CHASM
1
0
0
0
0
57
Mutation_CoOccurrence
1
0
0
0
0
58
Mutation_CoOccurrence_Custom
1
0
0
0
0
59
MutSigNozzleReport2.0
1
0
0
0
0
60
MutSigNozzleReport2CV
1
0
0
0
0
61
MutSigNozzleReportCV
1
0
0
0
0
62
MutSigPreprocess2.0
1
0
0
0
0
63
MutSigRun2.0
1
0
0
0
0
64
MutSigRun2CV
1
0
0
0
0
65
MutSigRunCV
1
0
0
0
0
66
Paradigm_mRNA
1
0
0
0
0
67
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
68
Paradigm_Prepare_mRNA
1
0
0
0
0
69
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
70
Paradigm_Prepare_RNASeq
1
0
0
0
0
71
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
72
ParadigmPreprocess_mRNA
0
1
0
0
0
73
Paradigm_Preprocess_mRNA
1
0
0
0
0
74
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
0
1
0
0
0
76
Paradigm_Preprocess_RNASeq
1
0
0
0
0
77
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
79
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
81
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
Paradigm_RNASeq
1
0
0
0
0
83
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
84
Pathway_FindEnrichedGenes
1
0
0
0
0
85
Pathway_GSEA_mRNAseq
1
0
0
0
0
86
Pathway_Hotnet
1
0
0
0
0
87
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
88
Pathway_Paradigm_mRNA
1
0
0
0
0
89
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
90
Pathway_Paradigm_RNASeq
1
0
0
0
0
91
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
92
ProcessCoverageForMutSig2.0
1
0
0
0
0
93
RPPA_Clustering_CNMF
0
1
0
0
0
94
RPPA_Clustering_Consensus_Plus
0
1
0
0
0
95
TR-Aggregate_AnalysisFeatures
0
1
0
0
0
96
TR-Aggregate_Gene_Status
1
0
0
0
0
97
TR-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
98
TR-Append_CustomClinical
0
1
0
0
0
99
TR-CoMut2.0
1
0
0
0
0
100
TR-CoMut2CV
1
0
0
0
0
101
TR-CoMutCV
1
0
0
0
0
102
TR-CopyNumber_Clustering_CNMF
1
0
0
0
0
103
TR-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
TR-CopyNumber_Gistic2
0
1
0
0
0
105
TR-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
106
TR-CopyNumberLowPass_Gistic2
1
0
0
0
0
107
TR-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
TR-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
TR-Correlate_Clinical_vs_Methylation
1
0
0
0
0
110
TR-Correlate_Clinical_vs_miR
1
0
0
0
0
111
TR-Correlate_Clinical_vs_miRseq
1
0
0
0
0
112
TR-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
113
TR-Correlate_Clinical_vs_mRNA
1
0
0
0
0
114
TR-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
115
TR-Correlate_Clinical_vs_Mutation
1
0
0
0
0
116
TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
117
TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
118
TR-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
119
TR-Correlate_Clinical_vs_RPPA
1
0
0
0
0
120
TR-Correlate_CopyNumber_vs_miR
1
0
0
0
0
121
TR-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
122
TR-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
123
TR-Correlate_Methylation_vs_mRNA
0
1
0
0
0
124
TR-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
125
TR-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
126
TR-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
127
TR-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
128
TR-GenerateStickFigures2.0
1
0
0
0
0
129
TR-GenerateStickFigures2CV
1
0
0
0
0
130
TR-GenerateStickFiguresCV
1
0
0
0
0
131
TR-iClusterPlus
1
0
0
0
0
132
TR-LegoPlotter2.0
1
0
0
0
0
133
TR-LegoPlotter2CV
1
0
0
0
0
134
TR-LegoPlotterCV
1
0
0
0
0
135
TR-Methylation_Clustering_CNMF
0
1
0
0
0
136
TR-miR_Clustering_CNMF
1
0
0
0
0
137
TR-miR_Clustering_Consensus_Plus
1
0
0
0
0
138
TR-miR_FindDirectTargets
1
0
0
0
0
139
TR-miRseq_Clustering_CNMF
1
0
0
0
0
140
TR-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
141
TR-miRseq_FindDirectTargets
1
0
0
0
0
142
TR-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
143
TR-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
144
TR-mRNA_Clustering_CNMF
1
0
0
0
0
145
TR-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
146
TR-mRNAseq_Clustering_CNMF
0
1
0
0
0
147
TR-mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
148
TR-Mutation_APOBEC
1
0
0
0
0
149
TR-Mutation_Assessor
1
0
0
0
0
150
TR-Mutation_CHASM
1
0
0
0
0
151
TR-Mutation_CoOccurrence
1
0
0
0
0
152
TR-Mutation_CoOccurrence_Custom
1
0
0
0
0
153
TR-MutSigNozzleReport2.0
1
0
0
0
0
154
TR-MutSigNozzleReport2CV
1
0
0
0
0
155
TR-MutSigNozzleReportCV
1
0
0
0
0
156
TR-MutSigPreprocess2.0
1
0
0
0
0
157
TR-MutSigRun2.0
1
0
0
0
0
158
TR-MutSigRun2CV
1
0
0
0
0
159
TR-MutSigRunCV
1
0
0
0
0
160
TR-Paradigm_mRNA
1
0
0
0
0
161
TR-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
162
TR-Paradigm_Prepare_mRNA
1
0
0
0
0
163
TR-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
164
TR-Paradigm_Prepare_RNASeq
1
0
0
0
0
165
TR-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
166
TR-Paradigm_Preprocess_mRNA
1
0
0
0
0
167
TR-ParadigmPreprocess_mRNA
1
0
0
0
0
168
TR-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
169
TR-ParadigmPreprocess_RNASeq
0
1
0
0
0
170
TR-Paradigm_Preprocess_RNASeq
1
0
0
0
0
171
TR-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
172
TR-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
173
TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
174
TR-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
175
TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
176
TR-Paradigm_RNASeq
1
0
0
0
0
177
TR-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
178
TR-Pathway_FindEnrichedGenes
1
0
0
0
0
179
TR-Pathway_GSEA_mRNAseq
1
0
0
0
0
180
TR-Pathway_Hotnet
1
0
0
0
0
181
TR-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
182
TR-Pathway_Paradigm_mRNA
1
0
0
0
0
183
TR-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
184
TR-Pathway_Paradigm_RNASeq
1
0
0
0
0
185
TR-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
186
TR-ProcessCoverageForMutSig2.0
1
0
0
0
0
187
TR-RPPA_Clustering_CNMF
1
0
0
0
0
188
TR-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
189
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
190
TP-Aggregate_Gene_Status
0
0
0
1
0
191
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
192
TP-Append_CustomClinical
0
0
0
1
0
193
TP-CoMut2.0
0
0
0
1
0
194
TP-CoMut2CV
0
0
0
1
0
195
TP-CoMutCV
0
0
0
1
0
196
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
197
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
198
TP-CopyNumber_Gistic2
0
0
0
1
0
199
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
200
TP-CopyNumberLowPass_Gistic2
0
0
0
1
0
201
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
202
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
203
TP-Correlate_Clinical_vs_Methylation
0
0
0
1
0
204
TP-Correlate_Clinical_vs_miR
0
0
0
1
0
205
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
206
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
207
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
208
TP-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
209
TP-Correlate_Clinical_vs_Mutation
0
0
0
1
0
210
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
211
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
212
TP-Correlate_Clinical_vs_MutationRate
0
0
0
1
0
213
TP-Correlate_Clinical_vs_RPPA
0
0
0
1
0
214
TP-Correlate_CopyNumber_vs_miR
0
0
0
1
0
215
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
216
TP-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
217
TP-Correlate_Methylation_vs_mRNA
0
0
0
1
0
218
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
219
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
220
TP-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
221
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
222
TP-GenerateStickFigures2.0
0
0
0
1
0
223
TP-GenerateStickFigures2CV
0
0
0
1
0
224
TP-GenerateStickFiguresCV
0
0
0
1
0
225
TP-iClusterPlus
0
0
0
1
0
226
TP-LegoPlotter2.0
0
0
0
1
0
227
TP-LegoPlotter2CV
0
0
0
1
0
228
TP-LegoPlotterCV
0
0
0
1
0
229
TP-Methylation_Clustering_CNMF
0
0
0
1
0
230
TP-miR_Clustering_CNMF
0
0
0
1
0
231
TP-miR_Clustering_Consensus_Plus
0
0
0
1
0
232
TP-miR_FindDirectTargets
0
0
0
1
0
233
TP-miRseq_Clustering_CNMF
0
0
0
1
0
234
TP-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
235
TP-miRseq_FindDirectTargets
0
0
0
1
0
236
TP-miRseq_Mature_Clustering_CNMF
0
0
0
1
0
237
TP-miRseq_Mature_Clustering_Consensus_Plus
0
0
0
1
0
238
TP-mRNA_Clustering_CNMF
0
0
0
1
0
239
TP-mRNA_Clustering_Consensus_Plus
0
0
0
1
0
240
TP-mRNAseq_Clustering_CNMF
0
0
0
1
0
241
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
242
TP-Mutation_APOBEC
0
0
0
1
0
243
TP-Mutation_Assessor
0
0
0
1
0
244
TP-Mutation_CHASM
0
0
0
1
0
245
TP-Mutation_CoOccurrence
0
0
0
1
0
246
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
247
TP-MutSigNozzleReport2.0
0
0
0
1
0
248
TP-MutSigNozzleReport2CV
0
0
0
1
0
249
TP-MutSigNozzleReportCV
0
0
0
1
0
250
TP-MutSigPreprocess2.0
0
0
0
1
0
251
TP-MutSigRun2.0
0
0
0
1
0
252
TP-MutSigRun2CV
0
0
0
1
0
253
TP-MutSigRunCV
0
0
0
1
0
254
TP-Paradigm_mRNA
0
0
0
1
0
255
TP-Paradigm_mRNA_And_CopyNumber
0
0
0
1
0
256
TP-Paradigm_Prepare_mRNA
0
0
0
1
0
257
TP-Paradigm_Prepare_mRNA_And_Copy_Number
0
0
0
1
0
258
TP-Paradigm_Prepare_RNASeq
0
0
0
1
0
259
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
260
TP-Paradigm_Preprocess_mRNA
0
0
0
1
0
261
TP-ParadigmPreprocess_mRNA
0
0
0
1
0
262
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
0
0
0
1
0
263
TP-Paradigm_Preprocess_RNASeq
0
0
0
1
0
264
TP-ParadigmPreprocess_RNASeq
0
0
0
1
0
265
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
266
TP-Paradigm_Report_Preprocess_mRNA
0
0
0
1
0
267
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
0
0
0
1
0
268
TP-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
269
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
270
TP-Paradigm_RNASeq
0
0
0
1
0
271
TP-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
272
TP-Pathway_FindEnrichedGenes
0
0
0
1
0
273
TP-Pathway_GSEA_mRNAseq
0
0
0
1
0
274
TP-Pathway_Hotnet
0
0
0
0
1
275
TP-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
276
TP-Pathway_Paradigm_mRNA
0
0
0
1
0
277
TP-Pathway_Paradigm_mRNA_And_Copy_Number
0
0
0
1
0
278
TP-Pathway_Paradigm_RNASeq
0
0
0
1
0
279
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
280
TP-ProcessCoverageForMutSig2.0
0
0
0
1
0
281
TP-RPPA_Clustering_CNMF
0
0
0
1
0
282
TP-RPPA_Clustering_Consensus_Plus
0
0
0
1
0
283
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
284
NT-Aggregate_Gene_Status
1
0
0
0
0
285
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
286
NT-Append_CustomClinical
0
1
0
0
0
287
NT-CoMut2.0
1
0
0
0
0
288
NT-CoMut2CV
1
0
0
0
0
289
NT-CoMutCV
1
0
0
0
0
290
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
291
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
292
NT-CopyNumber_Gistic2
0
1
0
0
0
293
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
294
NT-CopyNumberLowPass_Gistic2
1
0
0
0
0
295
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
296
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
297
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
298
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
299
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
300
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
301
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
302
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
303
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
304
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
305
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
306
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
307
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
308
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
309
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
310
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
311
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
312
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
313
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
314
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
315
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
316
NT-GenerateStickFigures2.0
1
0
0
0
0
317
NT-GenerateStickFigures2CV
1
0
0
0
0
318
NT-GenerateStickFiguresCV
1
0
0
0
0
319
NT-iClusterPlus
1
0
0
0
0
320
NT-LegoPlotter2.0
1
0
0
0
0
321
NT-LegoPlotter2CV
1
0
0
0
0
322
NT-LegoPlotterCV
1
0
0
0
0
323
NT-Methylation_Clustering_CNMF
0
1
0
0
0
324
NT-miR_Clustering_CNMF
0
1
0
0
0
325
NT-miR_Clustering_Consensus_Plus
0
1
0
0
0
326
NT-miR_FindDirectTargets
0
1
0
0
0
327
NT-miRseq_Clustering_CNMF
1
0
0
0
0
328
NT-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
329
NT-miRseq_FindDirectTargets
1
0
0
0
0
330
NT-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
331
NT-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
332
NT-mRNA_Clustering_CNMF
1
0
0
0
0
333
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
334
NT-mRNAseq_Clustering_CNMF
1
0
0
0
0
335
NT-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
336
NT-Mutation_APOBEC
1
0
0
0
0
337
NT-Mutation_Assessor
1
0
0
0
0
338
NT-Mutation_CHASM
1
0
0
0
0
339
NT-Mutation_CoOccurrence
1
0
0
0
0
340
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
341
NT-MutSigNozzleReport2.0
1
0
0
0
0
342
NT-MutSigNozzleReport2CV
1
0
0
0
0
343
NT-MutSigNozzleReportCV
1
0
0
0
0
344
NT-MutSigPreprocess2.0
1
0
0
0
0
345
NT-MutSigRun2.0
1
0
0
0
0
346
NT-MutSigRun2CV
1
0
0
0
0
347
NT-MutSigRunCV
1
0
0
0
0
348
NT-Paradigm_mRNA
1
0
0
0
0
349
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
350
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
351
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
352
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
353
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
354
NT-ParadigmPreprocess_mRNA
0
1
0
0
0
355
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
356
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
357
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
358
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
359
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
360
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
361
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
362
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
363
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
364
NT-Paradigm_RNASeq
1
0
0
0
0
365
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
366
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
367
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
368
NT-Pathway_Hotnet
1
0
0
0
0
369
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
370
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
371
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
372
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
373
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
374
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
375
NT-RPPA_Clustering_CNMF
1
0
0
0
0
376
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
377
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
378
NB-Aggregate_Gene_Status
1
0
0
0
0
379
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
380
NB-Append_CustomClinical
0
1
0
0
0
381
NB-CoMut2.0
1
0
0
0
0
382
NB-CoMut2CV
1
0
0
0
0
383
NB-CoMutCV
1
0
0
0
0
384
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
385
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
386
NB-CopyNumber_Gistic2
0
1
0
0
0
387
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
388
NB-CopyNumberLowPass_Gistic2
0
1
0
0
0
389
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
390
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
391
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
392
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
393
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
394
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
395
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
396
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
397
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
398
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
399
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
400
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
401
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
402
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
403
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
404
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
405
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
406
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
407
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
408
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
409
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
410
NB-GenerateStickFigures2.0
1
0
0
0
0
411
NB-GenerateStickFigures2CV
1
0
0
0
0
412
NB-GenerateStickFiguresCV
1
0
0
0
0
413
NB-iClusterPlus
1
0
0
0
0
414
NB-LegoPlotter2.0
1
0
0
0
0
415
NB-LegoPlotter2CV
1
0
0
0
0
416
NB-LegoPlotterCV
1
0
0
0
0
417
NB-Methylation_Clustering_CNMF
1
0
0
0
0
418
NB-miR_Clustering_CNMF
1
0
0
0
0
419
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
420
NB-miR_FindDirectTargets
1
0
0
0
0
421
NB-miRseq_Clustering_CNMF
1
0
0
0
0
422
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
423
NB-miRseq_FindDirectTargets
1
0
0
0
0
424
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
425
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
426
NB-mRNA_Clustering_CNMF
1
0
0
0
0
427
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
428
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
429
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
430
NB-Mutation_APOBEC
1
0
0
0
0
431
NB-Mutation_Assessor
1
0
0
0
0
432
NB-Mutation_CHASM
1
0
0
0
0
433
NB-Mutation_CoOccurrence
1
0
0
0
0
434
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
435
NB-MutSigNozzleReport2.0
1
0
0
0
0
436
NB-MutSigNozzleReport2CV
1
0
0
0
0
437
NB-MutSigNozzleReportCV
1
0
0
0
0
438
NB-MutSigPreprocess2.0
1
0
0
0
0
439
NB-MutSigRun2.0
1
0
0
0
0
440
NB-MutSigRun2CV
1
0
0
0
0
441
NB-MutSigRunCV
1
0
0
0
0
442
NB-Paradigm_mRNA
1
0
0
0
0
443
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
444
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
445
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
446
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
447
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
448
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
449
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
450
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
451
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
452
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
453
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
454
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
455
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
456
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
457
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
458
NB-Paradigm_RNASeq
1
0
0
0
0
459
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
460
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
461
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
462
NB-Pathway_Hotnet
1
0
0
0
0
463
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
464
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
465
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
466
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
467
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
468
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
469
NB-RPPA_Clustering_CNMF
1
0
0
0
0
470
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
471
NBC-Aggregate_AnalysisFeatures
0
1
0
0
0
472
NBC-Aggregate_Gene_Status
1
0
0
0
0
473
NBC-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
474
NBC-Append_CustomClinical
0
1
0
0
0
475
NBC-CoMut2.0
1
0
0
0
0
476
NBC-CoMut2CV
1
0
0
0
0
477
NBC-CoMutCV
1
0
0
0
0
478
NBC-CopyNumber_Clustering_CNMF
1
0
0
0
0
479
NBC-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
480
NBC-CopyNumber_Gistic2
0
1
0
0
0
481
NBC-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
482
NBC-CopyNumberLowPass_Gistic2
1
0
0
0
0
483
NBC-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
484
NBC-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
485
NBC-Correlate_Clinical_vs_Methylation
1
0
0
0
0
486
NBC-Correlate_Clinical_vs_miR
1
0
0
0
0
487
NBC-Correlate_Clinical_vs_miRseq
1
0
0
0
0
488
NBC-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
489
NBC-Correlate_Clinical_vs_mRNA
1
0
0
0
0
490
NBC-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
491
NBC-Correlate_Clinical_vs_Mutation
1
0
0
0
0
492
NBC-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
493
NBC-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
494
NBC-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
495
NBC-Correlate_Clinical_vs_RPPA
1
0
0
0
0
496
NBC-Correlate_CopyNumber_vs_miR
1
0
0
0
0
497
NBC-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
498
NBC-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
499
NBC-Correlate_Methylation_vs_mRNA
1
0
0
0
0
500
NBC-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
501
NBC-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
502
NBC-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
503
NBC-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
504
NBC-GenerateStickFigures2.0
1
0
0
0
0
505
NBC-GenerateStickFigures2CV
1
0
0
0
0
506
NBC-GenerateStickFiguresCV
1
0
0
0
0
507
NBC-iClusterPlus
1
0
0
0
0
508
NBC-LegoPlotter2.0
1
0
0
0
0
509
NBC-LegoPlotter2CV
1
0
0
0
0
510
NBC-LegoPlotterCV
1
0
0
0
0
511
NBC-Methylation_Clustering_CNMF
1
0
0
0
0
512
NBC-miR_Clustering_CNMF
1
0
0
0
0
513
NBC-miR_Clustering_Consensus_Plus
1
0
0
0
0
514
NBC-miR_FindDirectTargets
1
0
0
0
0
515
NBC-miRseq_Clustering_CNMF
1
0
0
0
0
516
NBC-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
517
NBC-miRseq_FindDirectTargets
1
0
0
0
0
518
NBC-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
519
NBC-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
520
NBC-mRNA_Clustering_CNMF
1
0
0
0
0
521
NBC-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
522
NBC-mRNAseq_Clustering_CNMF
1
0
0
0
0
523
NBC-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
524
NBC-Mutation_APOBEC
1
0
0
0
0
525
NBC-Mutation_Assessor
1
0
0
0
0
526
NBC-Mutation_CHASM
1
0
0
0
0
527
NBC-Mutation_CoOccurrence
1
0
0
0
0
528
NBC-Mutation_CoOccurrence_Custom
1
0
0
0
0
529
NBC-MutSigNozzleReport2.0
1
0
0
0
0
530
NBC-MutSigNozzleReport2CV
1
0
0
0
0
531
NBC-MutSigNozzleReportCV
1
0
0
0
0
532
NBC-MutSigPreprocess2.0
1
0
0
0
0
533
NBC-MutSigRun2.0
1
0
0
0
0
534
NBC-MutSigRun2CV
1
0
0
0
0
535
NBC-MutSigRunCV
1
0
0
0
0
536
NBC-Paradigm_mRNA
1
0
0
0
0
537
NBC-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
538
NBC-Paradigm_Prepare_mRNA
1
0
0
0
0
539
NBC-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
540
NBC-Paradigm_Prepare_RNASeq
1
0
0
0
0
541
NBC-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
542
NBC-Paradigm_Preprocess_mRNA
1
0
0
0
0
543
NBC-ParadigmPreprocess_mRNA
1
0
0
0
0
544
NBC-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
545
NBC-Paradigm_Preprocess_RNASeq
1
0
0
0
0
546
NBC-ParadigmPreprocess_RNASeq
1
0
0
0
0
547
NBC-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
548
NBC-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
549
NBC-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
550
NBC-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
551
NBC-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
552
NBC-Paradigm_RNASeq
1
0
0
0
0
553
NBC-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
554
NBC-Pathway_FindEnrichedGenes
1
0
0
0
0
555
NBC-Pathway_GSEA_mRNAseq
1
0
0
0
0
556
NBC-Pathway_Hotnet
1
0
0
0
0
557
NBC-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
558
NBC-Pathway_Paradigm_mRNA
1
0
0
0
0
559
NBC-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
560
NBC-Pathway_Paradigm_RNASeq
1
0
0
0
0
561
NBC-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
562
NBC-ProcessCoverageForMutSig2.0
1
0
0
0
0
563
NBC-RPPA_Clustering_CNMF
1
0
0
0
0
564
NBC-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
428
46
0
89
1
This table generated on Fri Jun 10 09:06:10 2016