Broad GDAC Analyses Status
integration Run for Tumor Type: KIRP
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
KIRP
323
291
289
0
291
16
290
0
291
215
161
282
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Gene_Status
1
0
0
0
0
3
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
4
Append_CustomClinical
0
1
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
10
CopyNumber_Gistic2
0
1
0
0
0
11
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
12
CopyNumberLowPass_Gistic2
1
0
0
0
0
13
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
15
Correlate_Clinical_vs_Methylation
1
0
0
0
0
16
Correlate_Clinical_vs_miR
1
0
0
0
0
17
Correlate_Clinical_vs_miRseq
1
0
0
0
0
18
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
19
Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
21
Correlate_Clinical_vs_Mutation
1
0
0
0
0
22
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
29
Correlate_Methylation_vs_mRNA
0
1
0
0
0
30
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
31
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
32
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
33
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
GenerateStickFigures2.0
1
0
0
0
0
35
GenerateStickFigures2CV
1
0
0
0
0
36
GenerateStickFiguresCV
1
0
0
0
0
37
iClusterPlus
1
0
0
0
0
38
LegoPlotter2.0
1
0
0
0
0
39
LegoPlotter2CV
1
0
0
0
0
40
LegoPlotterCV
1
0
0
0
0
41
Methylation_Clustering_CNMF
0
1
0
0
0
42
miR_Clustering_CNMF
1
0
0
0
0
43
miR_Clustering_Consensus_Plus
1
0
0
0
0
44
miR_FindDirectTargets
1
0
0
0
0
45
miRseq_Clustering_CNMF
0
1
0
0
0
46
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
47
miRseq_FindDirectTargets
0
1
0
0
0
48
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
49
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
50
mRNA_Clustering_CNMF
1
0
0
0
0
51
mRNA_Clustering_Consensus_Plus
1
0
0
0
0
52
mRNAseq_Clustering_CNMF
0
1
0
0
0
53
mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
54
Mutation_APOBEC
1
0
0
0
0
55
Mutation_Assessor
1
0
0
0
0
56
Mutation_CHASM
1
0
0
0
0
57
Mutation_CoOccurrence
1
0
0
0
0
58
Mutation_CoOccurrence_Custom
1
0
0
0
0
59
MutSigNozzleReport2.0
1
0
0
0
0
60
MutSigNozzleReport2CV
1
0
0
0
0
61
MutSigNozzleReportCV
1
0
0
0
0
62
MutSigPreprocess2.0
1
0
0
0
0
63
MutSigRun2.0
1
0
0
0
0
64
MutSigRun2CV
1
0
0
0
0
65
MutSigRunCV
1
0
0
0
0
66
Paradigm_mRNA
1
0
0
0
0
67
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
68
Paradigm_Prepare_mRNA
1
0
0
0
0
69
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
70
Paradigm_Prepare_RNASeq
1
0
0
0
0
71
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
72
ParadigmPreprocess_mRNA
0
1
0
0
0
73
Paradigm_Preprocess_mRNA
1
0
0
0
0
74
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
0
1
0
0
0
76
Paradigm_Preprocess_RNASeq
1
0
0
0
0
77
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
79
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
81
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
Paradigm_RNASeq
1
0
0
0
0
83
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
84
Pathway_FindEnrichedGenes
1
0
0
0
0
85
Pathway_GSEA_mRNAseq
1
0
0
0
0
86
Pathway_Hotnet
1
0
0
0
0
87
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
88
Pathway_Paradigm_mRNA
1
0
0
0
0
89
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
90
Pathway_Paradigm_RNASeq
1
0
0
0
0
91
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
92
ProcessCoverageForMutSig2.0
1
0
0
0
0
93
RPPA_Clustering_CNMF
0
1
0
0
0
94
RPPA_Clustering_Consensus_Plus
0
1
0
0
0
95
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
96
TP-Aggregate_Gene_Status
0
0
0
1
0
97
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
98
TP-Append_CustomClinical
0
0
0
1
0
99
TP-CoMut2.0
0
0
0
1
0
100
TP-CoMut2CV
0
0
0
1
0
101
TP-CoMutCV
0
0
0
1
0
102
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
103
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
104
TP-CopyNumber_Gistic2
0
0
0
1
0
105
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
106
TP-CopyNumberLowPass_Gistic2
1
0
0
0
0
107
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
108
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
109
TP-Correlate_Clinical_vs_Methylation
0
0
0
1
0
110
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
111
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
112
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
113
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
114
TP-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
115
TP-Correlate_Clinical_vs_Mutation
0
0
0
1
0
116
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
117
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
118
TP-Correlate_Clinical_vs_MutationRate
0
0
0
1
0
119
TP-Correlate_Clinical_vs_RPPA
0
0
0
1
0
120
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
121
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
122
TP-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
123
TP-Correlate_Methylation_vs_mRNA
0
0
0
1
0
124
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
125
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
126
TP-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
127
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
128
TP-GenerateStickFigures2.0
0
0
0
1
0
129
TP-GenerateStickFigures2CV
0
0
0
1
0
130
TP-GenerateStickFiguresCV
0
0
0
1
0
131
TP-iClusterPlus
0
0
0
1
0
132
TP-LegoPlotter2.0
0
0
0
1
0
133
TP-LegoPlotter2CV
0
0
0
1
0
134
TP-LegoPlotterCV
0
0
0
1
0
135
TP-Methylation_Clustering_CNMF
0
0
0
1
0
136
TP-miR_Clustering_CNMF
1
0
0
0
0
137
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
138
TP-miR_FindDirectTargets
1
0
0
0
0
139
TP-miRseq_Clustering_CNMF
0
0
0
1
0
140
TP-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
141
TP-miRseq_FindDirectTargets
0
0
0
1
0
142
TP-miRseq_Mature_Clustering_CNMF
0
0
0
1
0
143
TP-miRseq_Mature_Clustering_Consensus_Plus
0
0
0
1
0
144
TP-mRNA_Clustering_CNMF
1
0
0
0
0
145
TP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
146
TP-mRNAseq_Clustering_CNMF
0
0
0
1
0
147
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
148
TP-Mutation_APOBEC
0
0
0
1
0
149
TP-Mutation_Assessor
0
0
0
1
0
150
TP-Mutation_CHASM
0
0
0
1
0
151
TP-Mutation_CoOccurrence
0
0
0
1
0
152
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
153
TP-MutSigNozzleReport2.0
0
0
0
1
0
154
TP-MutSigNozzleReport2CV
0
0
0
1
0
155
TP-MutSigNozzleReportCV
0
0
0
1
0
156
TP-MutSigPreprocess2.0
0
0
0
1
0
157
TP-MutSigRun2.0
0
0
0
1
0
158
TP-MutSigRun2CV
0
0
0
1
0
159
TP-MutSigRunCV
0
0
0
1
0
160
TP-Paradigm_mRNA
0
0
0
1
0
161
TP-Paradigm_mRNA_And_CopyNumber
0
0
0
1
0
162
TP-Paradigm_Prepare_mRNA
0
0
0
1
0
163
TP-Paradigm_Prepare_mRNA_And_Copy_Number
0
0
0
1
0
164
TP-Paradigm_Prepare_RNASeq
0
0
0
1
0
165
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
166
TP-Paradigm_Preprocess_mRNA
0
0
0
1
0
167
TP-ParadigmPreprocess_mRNA
0
0
0
1
0
168
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
0
0
0
1
0
169
TP-Paradigm_Preprocess_RNASeq
0
0
0
1
0
170
TP-ParadigmPreprocess_RNASeq
0
0
0
1
0
171
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
172
TP-Paradigm_Report_Preprocess_mRNA
0
0
0
1
0
173
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
0
0
0
1
0
174
TP-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
175
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
176
TP-Paradigm_RNASeq
0
0
0
1
0
177
TP-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
178
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
179
TP-Pathway_GSEA_mRNAseq
0
0
0
1
0
180
TP-Pathway_Hotnet
0
0
0
0
1
181
TP-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
182
TP-Pathway_Paradigm_mRNA
0
0
0
1
0
183
TP-Pathway_Paradigm_mRNA_And_Copy_Number
0
0
0
1
0
184
TP-Pathway_Paradigm_RNASeq
0
0
0
1
0
185
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
186
TP-ProcessCoverageForMutSig2.0
0
0
0
1
0
187
TP-RPPA_Clustering_CNMF
0
0
0
1
0
188
TP-RPPA_Clustering_Consensus_Plus
0
0
0
1
0
189
TAP-Aggregate_AnalysisFeatures
0
1
0
0
0
190
TAP-Aggregate_Gene_Status
1
0
0
0
0
191
TAP-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
192
TAP-Append_CustomClinical
1
0
0
0
0
193
TAP-CoMut2.0
1
0
0
0
0
194
TAP-CoMut2CV
1
0
0
0
0
195
TAP-CoMutCV
1
0
0
0
0
196
TAP-CopyNumber_Clustering_CNMF
1
0
0
0
0
197
TAP-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
198
TAP-CopyNumber_Gistic2
1
0
0
0
0
199
TAP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
200
TAP-CopyNumberLowPass_Gistic2
1
0
0
0
0
201
TAP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
202
TAP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
203
TAP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
204
TAP-Correlate_Clinical_vs_miR
1
0
0
0
0
205
TAP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
206
TAP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
207
TAP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
208
TAP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
209
TAP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
210
TAP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
211
TAP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
212
TAP-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
213
TAP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
214
TAP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
215
TAP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
216
TAP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
217
TAP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
218
TAP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
219
TAP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
220
TAP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
221
TAP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
222
TAP-GenerateStickFigures2.0
1
0
0
0
0
223
TAP-GenerateStickFigures2CV
1
0
0
0
0
224
TAP-GenerateStickFiguresCV
1
0
0
0
0
225
TAP-iClusterPlus
1
0
0
0
0
226
TAP-LegoPlotter2.0
1
0
0
0
0
227
TAP-LegoPlotter2CV
1
0
0
0
0
228
TAP-LegoPlotterCV
1
0
0
0
0
229
TAP-Methylation_Clustering_CNMF
0
1
0
0
0
230
TAP-miR_Clustering_CNMF
1
0
0
0
0
231
TAP-miR_Clustering_Consensus_Plus
1
0
0
0
0
232
TAP-miR_FindDirectTargets
1
0
0
0
0
233
TAP-miRseq_Clustering_CNMF
1
0
0
0
0
234
TAP-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
235
TAP-miRseq_FindDirectTargets
1
0
0
0
0
236
TAP-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
237
TAP-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
238
TAP-mRNA_Clustering_CNMF
1
0
0
0
0
239
TAP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
240
TAP-mRNAseq_Clustering_CNMF
1
0
0
0
0
241
TAP-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
242
TAP-Mutation_APOBEC
1
0
0
0
0
243
TAP-Mutation_Assessor
1
0
0
0
0
244
TAP-Mutation_CHASM
1
0
0
0
0
245
TAP-Mutation_CoOccurrence
1
0
0
0
0
246
TAP-Mutation_CoOccurrence_Custom
1
0
0
0
0
247
TAP-MutSigNozzleReport2.0
1
0
0
0
0
248
TAP-MutSigNozzleReport2CV
1
0
0
0
0
249
TAP-MutSigNozzleReportCV
1
0
0
0
0
250
TAP-MutSigPreprocess2.0
1
0
0
0
0
251
TAP-MutSigRun2.0
1
0
0
0
0
252
TAP-MutSigRun2CV
1
0
0
0
0
253
TAP-MutSigRunCV
1
0
0
0
0
254
TAP-Paradigm_mRNA
1
0
0
0
0
255
TAP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
256
TAP-Paradigm_Prepare_mRNA
1
0
0
0
0
257
TAP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
258
TAP-Paradigm_Prepare_RNASeq
1
0
0
0
0
259
TAP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
260
TAP-Paradigm_Preprocess_mRNA
1
0
0
0
0
261
TAP-ParadigmPreprocess_mRNA
1
0
0
0
0
262
TAP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
263
TAP-ParadigmPreprocess_RNASeq
0
1
0
0
0
264
TAP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
265
TAP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
266
TAP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
267
TAP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
268
TAP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
269
TAP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
270
TAP-Paradigm_RNASeq
1
0
0
0
0
271
TAP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
272
TAP-Pathway_FindEnrichedGenes
1
0
0
0
0
273
TAP-Pathway_GSEA_mRNAseq
1
0
0
0
0
274
TAP-Pathway_Hotnet
1
0
0
0
0
275
TAP-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
276
TAP-Pathway_Paradigm_mRNA
1
0
0
0
0
277
TAP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
278
TAP-Pathway_Paradigm_RNASeq
1
0
0
0
0
279
TAP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
280
TAP-ProcessCoverageForMutSig2.0
1
0
0
0
0
281
TAP-RPPA_Clustering_CNMF
1
0
0
0
0
282
TAP-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
283
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
284
NT-Aggregate_Gene_Status
1
0
0
0
0
285
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
286
NT-Append_CustomClinical
0
1
0
0
0
287
NT-CoMut2.0
1
0
0
0
0
288
NT-CoMut2CV
1
0
0
0
0
289
NT-CoMutCV
1
0
0
0
0
290
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
291
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
292
NT-CopyNumber_Gistic2
0
1
0
0
0
293
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
294
NT-CopyNumberLowPass_Gistic2
1
0
0
0
0
295
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
296
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
297
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
298
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
299
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
300
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
301
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
302
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
303
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
304
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
305
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
306
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
307
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
308
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
309
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
310
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
311
NT-Correlate_Methylation_vs_mRNA
0
1
0
0
0
312
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
313
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
314
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
315
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
316
NT-GenerateStickFigures2.0
1
0
0
0
0
317
NT-GenerateStickFigures2CV
1
0
0
0
0
318
NT-GenerateStickFiguresCV
1
0
0
0
0
319
NT-iClusterPlus
1
0
0
0
0
320
NT-LegoPlotter2.0
1
0
0
0
0
321
NT-LegoPlotter2CV
1
0
0
0
0
322
NT-LegoPlotterCV
1
0
0
0
0
323
NT-Methylation_Clustering_CNMF
0
1
0
0
0
324
NT-miR_Clustering_CNMF
1
0
0
0
0
325
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
326
NT-miR_FindDirectTargets
1
0
0
0
0
327
NT-miRseq_Clustering_CNMF
0
1
0
0
0
328
NT-miRseq_Clustering_Consensus_Plus
0
1
0
0
0
329
NT-miRseq_FindDirectTargets
0
1
0
0
0
330
NT-miRseq_Mature_Clustering_CNMF
0
1
0
0
0
331
NT-miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
332
NT-mRNA_Clustering_CNMF
1
0
0
0
0
333
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
334
NT-mRNAseq_Clustering_CNMF
0
1
0
0
0
335
NT-mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
336
NT-Mutation_APOBEC
1
0
0
0
0
337
NT-Mutation_Assessor
1
0
0
0
0
338
NT-Mutation_CHASM
1
0
0
0
0
339
NT-Mutation_CoOccurrence
1
0
0
0
0
340
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
341
NT-MutSigNozzleReport2.0
1
0
0
0
0
342
NT-MutSigNozzleReport2CV
1
0
0
0
0
343
NT-MutSigNozzleReportCV
1
0
0
0
0
344
NT-MutSigPreprocess2.0
1
0
0
0
0
345
NT-MutSigRun2.0
1
0
0
0
0
346
NT-MutSigRun2CV
1
0
0
0
0
347
NT-MutSigRunCV
1
0
0
0
0
348
NT-Paradigm_mRNA
1
0
0
0
0
349
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
350
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
351
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
352
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
353
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
354
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
355
NT-ParadigmPreprocess_mRNA
1
0
0
0
0
356
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
357
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
358
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
359
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
360
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
361
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
362
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
363
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
364
NT-Paradigm_RNASeq
1
0
0
0
0
365
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
366
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
367
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
368
NT-Pathway_Hotnet
1
0
0
0
0
369
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
370
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
371
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
372
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
373
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
374
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
375
NT-RPPA_Clustering_CNMF
1
0
0
0
0
376
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
377
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
378
NB-Aggregate_Gene_Status
1
0
0
0
0
379
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
380
NB-Append_CustomClinical
0
1
0
0
0
381
NB-CoMut2.0
1
0
0
0
0
382
NB-CoMut2CV
1
0
0
0
0
383
NB-CoMutCV
1
0
0
0
0
384
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
385
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
386
NB-CopyNumber_Gistic2
0
1
0
0
0
387
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
388
NB-CopyNumberLowPass_Gistic2
1
0
0
0
0
389
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
390
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
391
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
392
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
393
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
394
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
395
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
396
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
397
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
398
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
399
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
400
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
401
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
402
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
403
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
404
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
405
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
406
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
407
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
408
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
409
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
410
NB-GenerateStickFigures2.0
1
0
0
0
0
411
NB-GenerateStickFigures2CV
1
0
0
0
0
412
NB-GenerateStickFiguresCV
1
0
0
0
0
413
NB-iClusterPlus
1
0
0
0
0
414
NB-LegoPlotter2.0
1
0
0
0
0
415
NB-LegoPlotter2CV
1
0
0
0
0
416
NB-LegoPlotterCV
1
0
0
0
0
417
NB-Methylation_Clustering_CNMF
1
0
0
0
0
418
NB-miR_Clustering_CNMF
1
0
0
0
0
419
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
420
NB-miR_FindDirectTargets
1
0
0
0
0
421
NB-miRseq_Clustering_CNMF
1
0
0
0
0
422
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
423
NB-miRseq_FindDirectTargets
1
0
0
0
0
424
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
425
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
426
NB-mRNA_Clustering_CNMF
1
0
0
0
0
427
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
428
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
429
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
430
NB-Mutation_APOBEC
1
0
0
0
0
431
NB-Mutation_Assessor
1
0
0
0
0
432
NB-Mutation_CHASM
1
0
0
0
0
433
NB-Mutation_CoOccurrence
1
0
0
0
0
434
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
435
NB-MutSigNozzleReport2.0
1
0
0
0
0
436
NB-MutSigNozzleReport2CV
1
0
0
0
0
437
NB-MutSigNozzleReportCV
1
0
0
0
0
438
NB-MutSigPreprocess2.0
1
0
0
0
0
439
NB-MutSigRun2.0
1
0
0
0
0
440
NB-MutSigRun2CV
1
0
0
0
0
441
NB-MutSigRunCV
1
0
0
0
0
442
NB-Paradigm_mRNA
1
0
0
0
0
443
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
444
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
445
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
446
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
447
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
448
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
449
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
450
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
451
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
452
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
453
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
454
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
455
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
456
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
457
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
458
NB-Paradigm_RNASeq
1
0
0
0
0
459
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
460
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
461
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
462
NB-Pathway_Hotnet
1
0
0
0
0
463
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
464
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
465
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
466
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
467
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
468
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
469
NB-RPPA_Clustering_CNMF
1
0
0
0
0
470
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
356
35
0
78
1
This table generated on Fri Jun 10 09:06:15 2016