| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful |
|---|
| 1 | Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 2 | Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
| 3 | Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 4 | Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
| 5 | CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
| 6 | CoMut2CV | 1 | 0 | 0 | 0 | 0 |
| 7 | CoMutCV | 1 | 0 | 0 | 0 | 0 |
| 8 | CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 9 | CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 10 | CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
| 11 | CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 12 | CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 13 | Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 14 | Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 15 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 16 | Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 17 | Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
| 18 | Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 19 | Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 20 | Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 21 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 22 | Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
| 23 | Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
| 24 | Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
| 25 | Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 26 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 27 | Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 28 | Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 29 | Correlate_Methylation_vs_mRNA | 0 | 1 | 0 | 0 | 0 |
| 30 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 31 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 32 | Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 33 | Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 34 | GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
| 35 | GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
| 36 | GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
| 37 | iClusterPlus | 1 | 0 | 0 | 0 | 0 |
| 38 | LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
| 39 | LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
| 40 | LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
| 41 | Methylation_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 42 | miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 43 | miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 44 | miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 45 | miRseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 46 | miRseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 47 | miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 48 | miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 49 | miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 50 | mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 51 | mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 52 | mRNAseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
| 53 | mRNAseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
| 54 | Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 55 | Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
| 56 | Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
| 57 | Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 58 | Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
| 59 | MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
| 60 | MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
| 61 | MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
| 62 | MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
| 63 | MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
| 64 | MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
| 65 | MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
| 66 | Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 67 | Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 68 | Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 69 | Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 70 | Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 71 | Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 72 | Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 73 | ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 74 | Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 75 | ParadigmPreprocess_RNASeq | 0 | 1 | 0 | 0 | 0 |
| 76 | Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 77 | Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 78 | Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 79 | Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 80 | Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 81 | Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 82 | Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 83 | Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 84 | Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 85 | Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 86 | Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
| 87 | Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
| 88 | Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 89 | Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 90 | Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 91 | Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 92 | ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
| 93 | RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 94 | RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 95 | TB-Aggregate_AnalysisFeatures | 0 | 0 | 0 | 1 | 0 |
| 96 | TB-Aggregate_Gene_Status | 0 | 0 | 0 | 1 | 0 |
| 97 | TB-Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 98 | TB-Append_CustomClinical | 0 | 0 | 0 | 1 | 0 |
| 99 | TB-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
| 100 | TB-CoMut2CV | 0 | 0 | 0 | 1 | 0 |
| 101 | TB-CoMutCV | 0 | 0 | 0 | 1 | 0 |
| 102 | TB-CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 103 | TB-CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
| 104 | TB-CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 105 | TB-CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 106 | TB-CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 107 | TB-Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 108 | TB-Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 109 | TB-Correlate_Clinical_vs_Methylation | 0 | 0 | 0 | 1 | 0 |
| 110 | TB-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 111 | TB-Correlate_Clinical_vs_miRseq | 0 | 0 | 0 | 1 | 0 |
| 112 | TB-Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
| 113 | TB-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 114 | TB-Correlate_Clinical_vs_mRNAseq | 0 | 0 | 0 | 1 | 0 |
| 115 | TB-Correlate_Clinical_vs_Mutation | 0 | 0 | 0 | 1 | 0 |
| 116 | TB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
| 117 | TB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
| 118 | TB-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
| 119 | TB-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 120 | TB-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 121 | TB-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 122 | TB-Correlate_CopyNumber_vs_mRNAseq | 0 | 0 | 0 | 1 | 0 |
| 123 | TB-Correlate_Methylation_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 124 | TB-Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 125 | TB-Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 126 | TB-Correlate_molecularSubtype_vs_Mutation | 0 | 0 | 0 | 1 | 0 |
| 127 | TB-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 128 | TB-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
| 129 | TB-GenerateStickFigures2CV | 0 | 0 | 0 | 1 | 0 |
| 130 | TB-GenerateStickFiguresCV | 0 | 0 | 0 | 1 | 0 |
| 131 | TB-iClusterPlus | 0 | 0 | 0 | 1 | 0 |
| 132 | TB-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
| 133 | TB-LegoPlotter2CV | 0 | 0 | 0 | 1 | 0 |
| 134 | TB-LegoPlotterCV | 0 | 0 | 0 | 1 | 0 |
| 135 | TB-Methylation_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 136 | TB-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 137 | TB-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 138 | TB-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 139 | TB-miRseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 140 | TB-miRseq_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 141 | TB-miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 142 | TB-miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 143 | TB-miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 144 | TB-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 145 | TB-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 146 | TB-mRNAseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 147 | TB-mRNAseq_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
| 148 | TB-Mutation_APOBEC | 0 | 0 | 0 | 1 | 0 |
| 149 | TB-Mutation_Assessor | 0 | 0 | 0 | 1 | 0 |
| 150 | TB-Mutation_CHASM | 0 | 0 | 0 | 1 | 0 |
| 151 | TB-Mutation_CoOccurrence | 0 | 0 | 0 | 1 | 0 |
| 152 | TB-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
| 153 | TB-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
| 154 | TB-MutSigNozzleReport2CV | 0 | 0 | 0 | 1 | 0 |
| 155 | TB-MutSigNozzleReportCV | 0 | 0 | 0 | 1 | 0 |
| 156 | TB-MutSigPreprocess2.0 | 0 | 0 | 0 | 1 | 0 |
| 157 | TB-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
| 158 | TB-MutSigRun2CV | 0 | 0 | 0 | 1 | 0 |
| 159 | TB-MutSigRunCV | 0 | 0 | 0 | 1 | 0 |
| 160 | TB-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 161 | TB-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 162 | TB-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 163 | TB-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 164 | TB-Paradigm_Prepare_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 165 | TB-Paradigm_Prepare_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 166 | TB-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 167 | TB-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 168 | TB-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 169 | TB-Paradigm_Preprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 170 | TB-ParadigmPreprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 171 | TB-Paradigm_Preprocess_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 172 | TB-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 173 | TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 174 | TB-Paradigm_Report_Preprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 175 | TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 176 | TB-Paradigm_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 177 | TB-Paradigm_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 178 | TB-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 179 | TB-Pathway_GSEA_mRNAseq | 0 | 0 | 0 | 1 | 0 |
| 180 | TB-Pathway_Hotnet | 0 | 0 | 0 | 0 | 1 |
| 181 | TB-Pathway_Overlaps_MSigDB_MutSig2CV | 0 | 0 | 0 | 1 | 0 |
| 182 | TB-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 183 | TB-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 184 | TB-Pathway_Paradigm_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 185 | TB-Pathway_Paradigm_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 186 | TB-ProcessCoverageForMutSig2.0 | 0 | 0 | 0 | 0 | 1 |
| 187 | TB-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 188 | TB-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 189 | NT-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
| 190 | NT-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
| 191 | NT-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
| 192 | NT-Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
| 193 | NT-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
| 194 | NT-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
| 195 | NT-CoMutCV | 1 | 0 | 0 | 0 | 0 |
| 196 | NT-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 197 | NT-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
| 198 | NT-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
| 199 | NT-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
| 200 | NT-CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
| 201 | NT-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 202 | NT-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 203 | NT-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
| 204 | NT-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 205 | NT-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
| 206 | NT-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
| 207 | NT-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 208 | NT-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 209 | NT-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 210 | NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
| 211 | NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
| 212 | NT-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
| 213 | NT-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 214 | NT-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 215 | NT-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 216 | NT-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 217 | NT-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 218 | NT-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
| 219 | NT-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
| 220 | NT-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
| 221 | NT-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 222 | NT-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
| 223 | NT-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
| 224 | NT-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
| 225 | NT-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
| 226 | NT-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
| 227 | NT-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
| 228 | NT-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
| 229 | NT-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 230 | NT-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 231 | NT-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 232 | NT-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 233 | NT-miRseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 234 | NT-miRseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 235 | NT-miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 236 | NT-miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 237 | NT-miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 238 | NT-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 239 | NT-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 240 | NT-mRNAseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 241 | NT-mRNAseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| 242 | NT-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
| 243 | NT-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
| 244 | NT-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
| 245 | NT-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
| 246 | NT-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
| 247 | NT-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
| 248 | NT-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
| 249 | NT-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
| 250 | NT-MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
| 251 | NT-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
| 252 | NT-MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
| 253 | NT-MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
| 254 | NT-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 255 | NT-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 256 | NT-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 257 | NT-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 258 | NT-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 259 | NT-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 260 | NT-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 261 | NT-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 262 | NT-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 263 | NT-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 264 | NT-ParadigmPreprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 265 | NT-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 266 | NT-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 267 | NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 268 | NT-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 269 | NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 270 | NT-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 271 | NT-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 272 | NT-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 273 | NT-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
| 274 | NT-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
| 275 | NT-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
| 276 | NT-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 277 | NT-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 278 | NT-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
| 279 | NT-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 280 | NT-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
| 281 | NT-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 282 | NT-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| Total | 213 | 13 | 0 | 54 | 2 |