Broad GDAC Analyses Status
integration Run for Tumor Type: LAML
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
LAML
200
200
197
0
194
0
179
0
188
0
197
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Gene_Status
1
0
0
0
0
3
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
4
Append_CustomClinical
0
1
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
10
CopyNumber_Gistic2
0
1
0
0
0
11
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
12
CopyNumberLowPass_Gistic2
1
0
0
0
0
13
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
15
Correlate_Clinical_vs_Methylation
1
0
0
0
0
16
Correlate_Clinical_vs_miR
1
0
0
0
0
17
Correlate_Clinical_vs_miRseq
1
0
0
0
0
18
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
19
Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
21
Correlate_Clinical_vs_Mutation
1
0
0
0
0
22
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
29
Correlate_Methylation_vs_mRNA
0
1
0
0
0
30
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
31
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
32
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
33
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
GenerateStickFigures2.0
1
0
0
0
0
35
GenerateStickFigures2CV
1
0
0
0
0
36
GenerateStickFiguresCV
1
0
0
0
0
37
iClusterPlus
1
0
0
0
0
38
LegoPlotter2.0
1
0
0
0
0
39
LegoPlotter2CV
1
0
0
0
0
40
LegoPlotterCV
1
0
0
0
0
41
Methylation_Clustering_CNMF
0
1
0
0
0
42
miR_Clustering_CNMF
1
0
0
0
0
43
miR_Clustering_Consensus_Plus
1
0
0
0
0
44
miR_FindDirectTargets
1
0
0
0
0
45
miRseq_Clustering_CNMF
0
1
0
0
0
46
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
47
miRseq_FindDirectTargets
1
0
0
0
0
48
miRseq_Mature_Clustering_CNMF
1
0
0
0
0
49
miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
50
mRNA_Clustering_CNMF
1
0
0
0
0
51
mRNA_Clustering_Consensus_Plus
1
0
0
0
0
52
mRNAseq_Clustering_CNMF
0
1
0
0
0
53
mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
54
Mutation_APOBEC
1
0
0
0
0
55
Mutation_Assessor
1
0
0
0
0
56
Mutation_CHASM
1
0
0
0
0
57
Mutation_CoOccurrence
1
0
0
0
0
58
Mutation_CoOccurrence_Custom
1
0
0
0
0
59
MutSigNozzleReport2.0
1
0
0
0
0
60
MutSigNozzleReport2CV
1
0
0
0
0
61
MutSigNozzleReportCV
1
0
0
0
0
62
MutSigPreprocess2.0
1
0
0
0
0
63
MutSigRun2.0
1
0
0
0
0
64
MutSigRun2CV
1
0
0
0
0
65
MutSigRunCV
1
0
0
0
0
66
Paradigm_mRNA
1
0
0
0
0
67
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
68
Paradigm_Prepare_mRNA
1
0
0
0
0
69
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
70
Paradigm_Prepare_RNASeq
1
0
0
0
0
71
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
72
Paradigm_Preprocess_mRNA
1
0
0
0
0
73
ParadigmPreprocess_mRNA
1
0
0
0
0
74
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
0
1
0
0
0
76
Paradigm_Preprocess_RNASeq
1
0
0
0
0
77
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
79
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
81
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
Paradigm_RNASeq
1
0
0
0
0
83
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
84
Pathway_FindEnrichedGenes
1
0
0
0
0
85
Pathway_GSEA_mRNAseq
1
0
0
0
0
86
Pathway_Hotnet
1
0
0
0
0
87
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
88
Pathway_Paradigm_mRNA
1
0
0
0
0
89
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
90
Pathway_Paradigm_RNASeq
1
0
0
0
0
91
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
92
ProcessCoverageForMutSig2.0
1
0
0
0
0
93
RPPA_Clustering_CNMF
1
0
0
0
0
94
RPPA_Clustering_Consensus_Plus
1
0
0
0
0
95
TB-Aggregate_AnalysisFeatures
0
0
0
1
0
96
TB-Aggregate_Gene_Status
0
0
0
1
0
97
TB-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
98
TB-Append_CustomClinical
0
0
0
1
0
99
TB-CoMut2.0
1
0
0
0
0
100
TB-CoMut2CV
0
0
0
1
0
101
TB-CoMutCV
0
0
0
1
0
102
TB-CopyNumber_Clustering_CNMF
0
0
0
1
0
103
TB-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
104
TB-CopyNumber_Gistic2
0
0
0
1
0
105
TB-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
106
TB-CopyNumberLowPass_Gistic2
1
0
0
0
0
107
TB-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
108
TB-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
109
TB-Correlate_Clinical_vs_Methylation
0
0
0
1
0
110
TB-Correlate_Clinical_vs_miR
1
0
0
0
0
111
TB-Correlate_Clinical_vs_miRseq
0
0
0
1
0
112
TB-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
113
TB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
114
TB-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
115
TB-Correlate_Clinical_vs_Mutation
0
0
0
1
0
116
TB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
117
TB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
118
TB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
119
TB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
120
TB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
121
TB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
122
TB-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
123
TB-Correlate_Methylation_vs_mRNA
0
0
0
1
0
124
TB-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
125
TB-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
126
TB-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
127
TB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
128
TB-GenerateStickFigures2.0
1
0
0
0
0
129
TB-GenerateStickFigures2CV
0
0
0
1
0
130
TB-GenerateStickFiguresCV
0
0
0
1
0
131
TB-iClusterPlus
0
0
0
1
0
132
TB-LegoPlotter2.0
1
0
0
0
0
133
TB-LegoPlotter2CV
0
0
0
1
0
134
TB-LegoPlotterCV
0
0
0
1
0
135
TB-Methylation_Clustering_CNMF
0
0
0
1
0
136
TB-miR_Clustering_CNMF
1
0
0
0
0
137
TB-miR_Clustering_Consensus_Plus
1
0
0
0
0
138
TB-miR_FindDirectTargets
1
0
0
0
0
139
TB-miRseq_Clustering_CNMF
0
0
0
1
0
140
TB-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
141
TB-miRseq_FindDirectTargets
1
0
0
0
0
142
TB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
143
TB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
144
TB-mRNA_Clustering_CNMF
1
0
0
0
0
145
TB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
146
TB-mRNAseq_Clustering_CNMF
0
0
0
1
0
147
TB-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
148
TB-Mutation_APOBEC
0
0
0
1
0
149
TB-Mutation_Assessor
0
0
0
1
0
150
TB-Mutation_CHASM
0
0
0
1
0
151
TB-Mutation_CoOccurrence
0
0
0
1
0
152
TB-Mutation_CoOccurrence_Custom
1
0
0
0
0
153
TB-MutSigNozzleReport2.0
1
0
0
0
0
154
TB-MutSigNozzleReport2CV
0
0
0
1
0
155
TB-MutSigNozzleReportCV
0
0
0
1
0
156
TB-MutSigPreprocess2.0
0
0
0
1
0
157
TB-MutSigRun2.0
1
0
0
0
0
158
TB-MutSigRun2CV
0
0
0
1
0
159
TB-MutSigRunCV
0
0
0
1
0
160
TB-Paradigm_mRNA
1
0
0
0
0
161
TB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
162
TB-Paradigm_Prepare_mRNA
1
0
0
0
0
163
TB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
164
TB-Paradigm_Prepare_RNASeq
0
0
0
1
0
165
TB-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
166
TB-Paradigm_Preprocess_mRNA
1
0
0
0
0
167
TB-ParadigmPreprocess_mRNA
1
0
0
0
0
168
TB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
169
TB-Paradigm_Preprocess_RNASeq
0
0
0
1
0
170
TB-ParadigmPreprocess_RNASeq
0
0
0
1
0
171
TB-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
172
TB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
173
TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
174
TB-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
175
TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
176
TB-Paradigm_RNASeq
0
0
0
1
0
177
TB-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
178
TB-Pathway_FindEnrichedGenes
1
0
0
0
0
179
TB-Pathway_GSEA_mRNAseq
0
0
0
1
0
180
TB-Pathway_Hotnet
0
0
0
0
1
181
TB-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
182
TB-Pathway_Paradigm_mRNA
1
0
0
0
0
183
TB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
184
TB-Pathway_Paradigm_RNASeq
0
0
0
1
0
185
TB-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
186
TB-ProcessCoverageForMutSig2.0
0
0
0
0
1
187
TB-RPPA_Clustering_CNMF
1
0
0
0
0
188
TB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
189
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
190
NT-Aggregate_Gene_Status
1
0
0
0
0
191
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
192
NT-Append_CustomClinical
0
1
0
0
0
193
NT-CoMut2.0
1
0
0
0
0
194
NT-CoMut2CV
1
0
0
0
0
195
NT-CoMutCV
1
0
0
0
0
196
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
197
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
198
NT-CopyNumber_Gistic2
0
1
0
0
0
199
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
200
NT-CopyNumberLowPass_Gistic2
1
0
0
0
0
201
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
202
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
203
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
204
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
205
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
206
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
207
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
208
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
209
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
210
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
211
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
212
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
213
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
214
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
215
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
216
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
217
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
218
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
219
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
220
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
221
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
222
NT-GenerateStickFigures2.0
1
0
0
0
0
223
NT-GenerateStickFigures2CV
1
0
0
0
0
224
NT-GenerateStickFiguresCV
1
0
0
0
0
225
NT-iClusterPlus
1
0
0
0
0
226
NT-LegoPlotter2.0
1
0
0
0
0
227
NT-LegoPlotter2CV
1
0
0
0
0
228
NT-LegoPlotterCV
1
0
0
0
0
229
NT-Methylation_Clustering_CNMF
1
0
0
0
0
230
NT-miR_Clustering_CNMF
1
0
0
0
0
231
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
232
NT-miR_FindDirectTargets
1
0
0
0
0
233
NT-miRseq_Clustering_CNMF
1
0
0
0
0
234
NT-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
235
NT-miRseq_FindDirectTargets
1
0
0
0
0
236
NT-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
237
NT-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
238
NT-mRNA_Clustering_CNMF
1
0
0
0
0
239
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
240
NT-mRNAseq_Clustering_CNMF
1
0
0
0
0
241
NT-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
242
NT-Mutation_APOBEC
1
0
0
0
0
243
NT-Mutation_Assessor
1
0
0
0
0
244
NT-Mutation_CHASM
1
0
0
0
0
245
NT-Mutation_CoOccurrence
1
0
0
0
0
246
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
247
NT-MutSigNozzleReport2.0
1
0
0
0
0
248
NT-MutSigNozzleReport2CV
1
0
0
0
0
249
NT-MutSigNozzleReportCV
1
0
0
0
0
250
NT-MutSigPreprocess2.0
1
0
0
0
0
251
NT-MutSigRun2.0
1
0
0
0
0
252
NT-MutSigRun2CV
1
0
0
0
0
253
NT-MutSigRunCV
1
0
0
0
0
254
NT-Paradigm_mRNA
1
0
0
0
0
255
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
256
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
257
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
258
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
259
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
260
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
261
NT-ParadigmPreprocess_mRNA
1
0
0
0
0
262
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
263
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
264
NT-ParadigmPreprocess_RNASeq
1
0
0
0
0
265
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
266
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
267
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
268
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
269
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
270
NT-Paradigm_RNASeq
1
0
0
0
0
271
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
272
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
273
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
274
NT-Pathway_Hotnet
1
0
0
0
0
275
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
276
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
277
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
278
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
279
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
280
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
281
NT-RPPA_Clustering_CNMF
1
0
0
0
0
282
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
213
13
0
54
2
This table generated on Fri Jun 10 09:06:16 2016