| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful |
---|
1 | Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
2 | Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
3 | Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
4 | Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
5 | CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
6 | CoMut2CV | 1 | 0 | 0 | 0 | 0 |
7 | CoMutCV | 1 | 0 | 0 | 0 | 0 |
8 | CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
9 | CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
10 | CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
11 | CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
12 | CopyNumberLowPass_Gistic2 | 0 | 1 | 0 | 0 | 0 |
13 | Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
14 | Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
15 | Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
16 | Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
17 | Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
18 | Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
19 | Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
20 | Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
21 | Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
22 | Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
23 | Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
24 | Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
25 | Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
26 | Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
27 | Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
28 | Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
29 | Correlate_Methylation_vs_mRNA | 0 | 1 | 0 | 0 | 0 |
30 | Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
31 | Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
32 | Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
33 | Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
34 | GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
35 | GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
36 | GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
37 | iClusterPlus | 1 | 0 | 0 | 0 | 0 |
38 | LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
39 | LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
40 | LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
41 | Methylation_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
42 | miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
43 | miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
44 | miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
45 | miRseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
46 | miRseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
47 | miRseq_FindDirectTargets | 0 | 1 | 0 | 0 | 0 |
48 | miRseq_Mature_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
49 | miRseq_Mature_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
50 | mRNA_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
51 | mRNA_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
52 | mRNAseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
53 | mRNAseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
54 | Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
55 | Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
56 | Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
57 | Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
58 | Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
59 | MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
60 | MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
61 | MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
62 | MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
63 | MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
64 | MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
65 | MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
66 | Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
67 | Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
68 | Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
69 | Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
70 | Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
71 | Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
72 | ParadigmPreprocess_mRNA | 0 | 1 | 0 | 0 | 0 |
73 | Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
74 | Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
75 | ParadigmPreprocess_RNASeq | 0 | 1 | 0 | 0 | 0 |
76 | Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
77 | Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
78 | Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
79 | Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
80 | Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
81 | Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
82 | Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
83 | Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
84 | Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
85 | Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
86 | Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
87 | Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
88 | Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
89 | Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
90 | Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
91 | Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
92 | ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
93 | RPPA_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
94 | RPPA_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
95 | TR-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
96 | TR-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
97 | TR-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
98 | TR-Append_CustomClinical | 1 | 0 | 0 | 0 | 0 |
99 | TR-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
100 | TR-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
101 | TR-CoMutCV | 1 | 0 | 0 | 0 | 0 |
102 | TR-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
103 | TR-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
104 | TR-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
105 | TR-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
106 | TR-CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
107 | TR-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
108 | TR-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
109 | TR-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
110 | TR-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
111 | TR-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
112 | TR-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
113 | TR-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
114 | TR-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
115 | TR-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
116 | TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
117 | TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
118 | TR-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
119 | TR-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
120 | TR-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
121 | TR-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
122 | TR-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
123 | TR-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
124 | TR-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
125 | TR-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
126 | TR-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
127 | TR-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
128 | TR-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
129 | TR-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
130 | TR-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
131 | TR-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
132 | TR-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
133 | TR-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
134 | TR-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
135 | TR-Methylation_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
136 | TR-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
137 | TR-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
138 | TR-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
139 | TR-miRseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
140 | TR-miRseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
141 | TR-miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
142 | TR-miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
143 | TR-miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
144 | TR-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
145 | TR-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
146 | TR-mRNAseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
147 | TR-mRNAseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
148 | TR-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
149 | TR-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
150 | TR-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
151 | TR-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
152 | TR-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
153 | TR-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
154 | TR-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
155 | TR-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
156 | TR-MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
157 | TR-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
158 | TR-MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
159 | TR-MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
160 | TR-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
161 | TR-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
162 | TR-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
163 | TR-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
164 | TR-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
165 | TR-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
166 | TR-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
167 | TR-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
168 | TR-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
169 | TR-ParadigmPreprocess_RNASeq | 0 | 1 | 0 | 0 | 0 |
170 | TR-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
171 | TR-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
172 | TR-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
173 | TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
174 | TR-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
175 | TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
176 | TR-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
177 | TR-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
178 | TR-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
179 | TR-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
180 | TR-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
181 | TR-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
182 | TR-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
183 | TR-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
184 | TR-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
185 | TR-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
186 | TR-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
187 | TR-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
188 | TR-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
189 | TP-Aggregate_AnalysisFeatures | 0 | 0 | 0 | 1 | 0 |
190 | TP-Aggregate_Gene_Status | 0 | 0 | 0 | 1 | 0 |
191 | TP-Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
192 | TP-Append_CustomClinical | 0 | 0 | 0 | 1 | 0 |
193 | TP-CoMut2.0 | 0 | 0 | 0 | 1 | 0 |
194 | TP-CoMut2CV | 0 | 0 | 0 | 1 | 0 |
195 | TP-CoMutCV | 0 | 0 | 0 | 1 | 0 |
196 | TP-CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
197 | TP-CopyNumber_Clustering_CNMF_thresholded | 0 | 0 | 0 | 1 | 0 |
198 | TP-CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
199 | TP-CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
200 | TP-CopyNumberLowPass_Gistic2 | 0 | 0 | 0 | 1 | 0 |
201 | TP-Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
202 | TP-Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
203 | TP-Correlate_Clinical_vs_Methylation | 0 | 0 | 0 | 1 | 0 |
204 | TP-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
205 | TP-Correlate_Clinical_vs_miRseq | 0 | 0 | 0 | 1 | 0 |
206 | TP-Correlate_Clinical_vs_Molecular_Subtypes | 0 | 0 | 0 | 1 | 0 |
207 | TP-Correlate_Clinical_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
208 | TP-Correlate_Clinical_vs_mRNAseq | 0 | 0 | 0 | 1 | 0 |
209 | TP-Correlate_Clinical_vs_Mutation | 0 | 0 | 0 | 1 | 0 |
210 | TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 0 | 0 | 0 | 1 | 0 |
211 | TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 0 | 0 | 0 | 1 | 0 |
212 | TP-Correlate_Clinical_vs_MutationRate | 0 | 0 | 0 | 1 | 0 |
213 | TP-Correlate_Clinical_vs_RPPA | 0 | 0 | 0 | 1 | 0 |
214 | TP-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
215 | TP-Correlate_CopyNumber_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
216 | TP-Correlate_CopyNumber_vs_mRNAseq | 0 | 0 | 0 | 1 | 0 |
217 | TP-Correlate_Methylation_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
218 | TP-Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
219 | TP-Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
220 | TP-Correlate_molecularSubtype_vs_Mutation | 0 | 0 | 0 | 1 | 0 |
221 | TP-Correlate_mRNAseq_vs_Mutation_APOBEC | 0 | 0 | 0 | 1 | 0 |
222 | TP-GenerateStickFigures2.0 | 0 | 0 | 0 | 1 | 0 |
223 | TP-GenerateStickFigures2CV | 0 | 0 | 0 | 1 | 0 |
224 | TP-GenerateStickFiguresCV | 0 | 0 | 0 | 1 | 0 |
225 | TP-iClusterPlus | 0 | 0 | 0 | 1 | 0 |
226 | TP-LegoPlotter2.0 | 0 | 0 | 0 | 1 | 0 |
227 | TP-LegoPlotter2CV | 0 | 0 | 0 | 1 | 0 |
228 | TP-LegoPlotterCV | 0 | 0 | 0 | 1 | 0 |
229 | TP-Methylation_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
230 | TP-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
231 | TP-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
232 | TP-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
233 | TP-miRseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
234 | TP-miRseq_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
235 | TP-miRseq_FindDirectTargets | 0 | 0 | 0 | 1 | 0 |
236 | TP-miRseq_Mature_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
237 | TP-miRseq_Mature_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
238 | TP-mRNA_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
239 | TP-mRNA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
240 | TP-mRNAseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
241 | TP-mRNAseq_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
242 | TP-Mutation_APOBEC | 0 | 0 | 0 | 1 | 0 |
243 | TP-Mutation_Assessor | 0 | 0 | 0 | 1 | 0 |
244 | TP-Mutation_CHASM | 0 | 0 | 0 | 1 | 0 |
245 | TP-Mutation_CoOccurrence | 0 | 0 | 0 | 1 | 0 |
246 | TP-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
247 | TP-MutSigNozzleReport2.0 | 0 | 0 | 0 | 1 | 0 |
248 | TP-MutSigNozzleReport2CV | 0 | 0 | 0 | 1 | 0 |
249 | TP-MutSigNozzleReportCV | 0 | 0 | 0 | 1 | 0 |
250 | TP-MutSigPreprocess2.0 | 0 | 0 | 0 | 1 | 0 |
251 | TP-MutSigRun2.0 | 0 | 0 | 0 | 1 | 0 |
252 | TP-MutSigRun2CV | 0 | 0 | 0 | 1 | 0 |
253 | TP-MutSigRunCV | 0 | 0 | 0 | 1 | 0 |
254 | TP-Paradigm_mRNA | 0 | 0 | 0 | 1 | 0 |
255 | TP-Paradigm_mRNA_And_CopyNumber | 0 | 0 | 0 | 1 | 0 |
256 | TP-Paradigm_Prepare_mRNA | 0 | 0 | 0 | 1 | 0 |
257 | TP-Paradigm_Prepare_mRNA_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
258 | TP-Paradigm_Prepare_RNASeq | 0 | 0 | 0 | 1 | 0 |
259 | TP-Paradigm_Prepare_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
260 | TP-Paradigm_Preprocess_mRNA | 0 | 0 | 0 | 1 | 0 |
261 | TP-ParadigmPreprocess_mRNA | 0 | 0 | 0 | 1 | 0 |
262 | TP-Paradigm_Preprocess_mRNA_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
263 | TP-Paradigm_Preprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
264 | TP-ParadigmPreprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
265 | TP-Paradigm_Preprocess_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
266 | TP-Paradigm_Report_Preprocess_mRNA | 0 | 0 | 0 | 1 | 0 |
267 | TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 0 | 0 | 0 | 1 | 0 |
268 | TP-Paradigm_Report_Preprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
269 | TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
270 | TP-Paradigm_RNASeq | 0 | 0 | 0 | 1 | 0 |
271 | TP-Paradigm_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
272 | TP-Pathway_FindEnrichedGenes | 0 | 0 | 0 | 1 | 0 |
273 | TP-Pathway_GSEA_mRNAseq | 0 | 0 | 0 | 1 | 0 |
274 | TP-Pathway_Hotnet | 0 | 0 | 0 | 0 | 1 |
275 | TP-Pathway_Overlaps_MSigDB_MutSig2CV | 0 | 0 | 0 | 1 | 0 |
276 | TP-Pathway_Paradigm_mRNA | 0 | 0 | 0 | 1 | 0 |
277 | TP-Pathway_Paradigm_mRNA_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
278 | TP-Pathway_Paradigm_RNASeq | 0 | 0 | 0 | 1 | 0 |
279 | TP-Pathway_Paradigm_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
280 | TP-ProcessCoverageForMutSig2.0 | 0 | 0 | 0 | 1 | 0 |
281 | TP-RPPA_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
282 | TP-RPPA_Clustering_Consensus_Plus | 0 | 0 | 0 | 1 | 0 |
283 | NT-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
284 | NT-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
285 | NT-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
286 | NT-Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
287 | NT-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
288 | NT-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
289 | NT-CoMutCV | 1 | 0 | 0 | 0 | 0 |
290 | NT-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
291 | NT-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
292 | NT-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
293 | NT-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
294 | NT-CopyNumberLowPass_Gistic2 | 0 | 1 | 0 | 0 | 0 |
295 | NT-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
296 | NT-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
297 | NT-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
298 | NT-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
299 | NT-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
300 | NT-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
301 | NT-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
302 | NT-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
303 | NT-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
304 | NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
305 | NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
306 | NT-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
307 | NT-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
308 | NT-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
309 | NT-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
310 | NT-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
311 | NT-Correlate_Methylation_vs_mRNA | 0 | 1 | 0 | 0 | 0 |
312 | NT-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
313 | NT-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
314 | NT-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
315 | NT-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
316 | NT-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
317 | NT-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
318 | NT-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
319 | NT-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
320 | NT-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
321 | NT-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
322 | NT-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
323 | NT-Methylation_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
324 | NT-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
325 | NT-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
326 | NT-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
327 | NT-miRseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
328 | NT-miRseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
329 | NT-miRseq_FindDirectTargets | 0 | 1 | 0 | 0 | 0 |
330 | NT-miRseq_Mature_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
331 | NT-miRseq_Mature_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
332 | NT-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
333 | NT-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
334 | NT-mRNAseq_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
335 | NT-mRNAseq_Clustering_Consensus_Plus | 0 | 1 | 0 | 0 | 0 |
336 | NT-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
337 | NT-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
338 | NT-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
339 | NT-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
340 | NT-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
341 | NT-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
342 | NT-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
343 | NT-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
344 | NT-MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
345 | NT-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
346 | NT-MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
347 | NT-MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
348 | NT-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
349 | NT-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
350 | NT-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
351 | NT-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
352 | NT-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
353 | NT-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
354 | NT-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
355 | NT-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
356 | NT-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
357 | NT-ParadigmPreprocess_RNASeq | 0 | 1 | 0 | 0 | 0 |
358 | NT-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
359 | NT-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
360 | NT-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
361 | NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
362 | NT-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
363 | NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
364 | NT-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
365 | NT-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
366 | NT-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
367 | NT-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
368 | NT-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
369 | NT-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
370 | NT-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
371 | NT-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
372 | NT-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
373 | NT-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
374 | NT-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
375 | NT-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
376 | NT-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
377 | NB-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
378 | NB-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
379 | NB-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
380 | NB-Append_CustomClinical | 0 | 1 | 0 | 0 | 0 |
381 | NB-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
382 | NB-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
383 | NB-CoMutCV | 1 | 0 | 0 | 0 | 0 |
384 | NB-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
385 | NB-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
386 | NB-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
387 | NB-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
388 | NB-CopyNumberLowPass_Gistic2 | 0 | 1 | 0 | 0 | 0 |
389 | NB-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
390 | NB-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
391 | NB-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
392 | NB-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
393 | NB-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
394 | NB-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
395 | NB-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
396 | NB-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
397 | NB-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
398 | NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
399 | NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
400 | NB-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
401 | NB-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
402 | NB-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
403 | NB-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
404 | NB-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
405 | NB-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
406 | NB-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
407 | NB-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
408 | NB-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
409 | NB-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
410 | NB-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
411 | NB-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
412 | NB-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
413 | NB-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
414 | NB-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
415 | NB-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
416 | NB-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
417 | NB-Methylation_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
418 | NB-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
419 | NB-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
420 | NB-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
421 | NB-miRseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
422 | NB-miRseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
423 | NB-miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
424 | NB-miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
425 | NB-miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
426 | NB-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
427 | NB-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
428 | NB-mRNAseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
429 | NB-mRNAseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
430 | NB-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
431 | NB-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
432 | NB-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
433 | NB-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
434 | NB-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
435 | NB-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
436 | NB-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
437 | NB-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
438 | NB-MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
439 | NB-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
440 | NB-MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
441 | NB-MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
442 | NB-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
443 | NB-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
444 | NB-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
445 | NB-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
446 | NB-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
447 | NB-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
448 | NB-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
449 | NB-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
450 | NB-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
451 | NB-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
452 | NB-ParadigmPreprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
453 | NB-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
454 | NB-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
455 | NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
456 | NB-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
457 | NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
458 | NB-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
459 | NB-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
460 | NB-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
461 | NB-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
462 | NB-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
463 | NB-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
464 | NB-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
465 | NB-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
466 | NB-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
467 | NB-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
468 | NB-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
469 | NB-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
470 | NB-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
471 | FFPE-Aggregate_AnalysisFeatures | 0 | 1 | 0 | 0 | 0 |
472 | FFPE-Aggregate_Gene_Status | 1 | 0 | 0 | 0 | 0 |
473 | FFPE-Aggregate_Molecular_Subtype_Clusters | 1 | 0 | 0 | 0 | 0 |
474 | FFPE-Append_CustomClinical | 1 | 0 | 0 | 0 | 0 |
475 | FFPE-CoMut2.0 | 1 | 0 | 0 | 0 | 0 |
476 | FFPE-CoMut2CV | 1 | 0 | 0 | 0 | 0 |
477 | FFPE-CoMutCV | 1 | 0 | 0 | 0 | 0 |
478 | FFPE-CopyNumber_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
479 | FFPE-CopyNumber_Clustering_CNMF_thresholded | 1 | 0 | 0 | 0 | 0 |
480 | FFPE-CopyNumber_Gistic2 | 0 | 1 | 0 | 0 | 0 |
481 | FFPE-CopyNumber_Gistic2_Postprocess_Focal | 1 | 0 | 0 | 0 | 0 |
482 | FFPE-CopyNumberLowPass_Gistic2 | 1 | 0 | 0 | 0 | 0 |
483 | FFPE-Correlate_Clinical_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
484 | FFPE-Correlate_Clinical_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
485 | FFPE-Correlate_Clinical_vs_Methylation | 1 | 0 | 0 | 0 | 0 |
486 | FFPE-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
487 | FFPE-Correlate_Clinical_vs_miRseq | 1 | 0 | 0 | 0 | 0 |
488 | FFPE-Correlate_Clinical_vs_Molecular_Subtypes | 1 | 0 | 0 | 0 | 0 |
489 | FFPE-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
490 | FFPE-Correlate_Clinical_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
491 | FFPE-Correlate_Clinical_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
492 | FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | 1 | 0 | 0 | 0 | 0 |
493 | FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | 1 | 0 | 0 | 0 | 0 |
494 | FFPE-Correlate_Clinical_vs_MutationRate | 1 | 0 | 0 | 0 | 0 |
495 | FFPE-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
496 | FFPE-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
497 | FFPE-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
498 | FFPE-Correlate_CopyNumber_vs_mRNAseq | 1 | 0 | 0 | 0 | 0 |
499 | FFPE-Correlate_Methylation_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
500 | FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm | 1 | 0 | 0 | 0 | 0 |
501 | FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal | 1 | 0 | 0 | 0 | 0 |
502 | FFPE-Correlate_molecularSubtype_vs_Mutation | 1 | 0 | 0 | 0 | 0 |
503 | FFPE-Correlate_mRNAseq_vs_Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
504 | FFPE-GenerateStickFigures2.0 | 1 | 0 | 0 | 0 | 0 |
505 | FFPE-GenerateStickFigures2CV | 1 | 0 | 0 | 0 | 0 |
506 | FFPE-GenerateStickFiguresCV | 1 | 0 | 0 | 0 | 0 |
507 | FFPE-iClusterPlus | 1 | 0 | 0 | 0 | 0 |
508 | FFPE-LegoPlotter2.0 | 1 | 0 | 0 | 0 | 0 |
509 | FFPE-LegoPlotter2CV | 1 | 0 | 0 | 0 | 0 |
510 | FFPE-LegoPlotterCV | 1 | 0 | 0 | 0 | 0 |
511 | FFPE-Methylation_Clustering_CNMF | 0 | 1 | 0 | 0 | 0 |
512 | FFPE-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
513 | FFPE-miR_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
514 | FFPE-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
515 | FFPE-miRseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
516 | FFPE-miRseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
517 | FFPE-miRseq_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
518 | FFPE-miRseq_Mature_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
519 | FFPE-miRseq_Mature_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
520 | FFPE-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
521 | FFPE-mRNA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
522 | FFPE-mRNAseq_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
523 | FFPE-mRNAseq_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
524 | FFPE-Mutation_APOBEC | 1 | 0 | 0 | 0 | 0 |
525 | FFPE-Mutation_Assessor | 1 | 0 | 0 | 0 | 0 |
526 | FFPE-Mutation_CHASM | 1 | 0 | 0 | 0 | 0 |
527 | FFPE-Mutation_CoOccurrence | 1 | 0 | 0 | 0 | 0 |
528 | FFPE-Mutation_CoOccurrence_Custom | 1 | 0 | 0 | 0 | 0 |
529 | FFPE-MutSigNozzleReport2.0 | 1 | 0 | 0 | 0 | 0 |
530 | FFPE-MutSigNozzleReport2CV | 1 | 0 | 0 | 0 | 0 |
531 | FFPE-MutSigNozzleReportCV | 1 | 0 | 0 | 0 | 0 |
532 | FFPE-MutSigPreprocess2.0 | 1 | 0 | 0 | 0 | 0 |
533 | FFPE-MutSigRun2.0 | 1 | 0 | 0 | 0 | 0 |
534 | FFPE-MutSigRun2CV | 1 | 0 | 0 | 0 | 0 |
535 | FFPE-MutSigRunCV | 1 | 0 | 0 | 0 | 0 |
536 | FFPE-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
537 | FFPE-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
538 | FFPE-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
539 | FFPE-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
540 | FFPE-Paradigm_Prepare_RNASeq | 1 | 0 | 0 | 0 | 0 |
541 | FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
542 | FFPE-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
543 | FFPE-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
544 | FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
545 | FFPE-Paradigm_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
546 | FFPE-ParadigmPreprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
547 | FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
548 | FFPE-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
549 | FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
550 | FFPE-Paradigm_Report_Preprocess_RNASeq | 1 | 0 | 0 | 0 | 0 |
551 | FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
552 | FFPE-Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
553 | FFPE-Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
554 | FFPE-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
555 | FFPE-Pathway_GSEA_mRNAseq | 1 | 0 | 0 | 0 | 0 |
556 | FFPE-Pathway_Hotnet | 1 | 0 | 0 | 0 | 0 |
557 | FFPE-Pathway_Overlaps_MSigDB_MutSig2CV | 1 | 0 | 0 | 0 | 0 |
558 | FFPE-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
559 | FFPE-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
560 | FFPE-Pathway_Paradigm_RNASeq | 1 | 0 | 0 | 0 | 0 |
561 | FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
562 | FFPE-ProcessCoverageForMutSig2.0 | 1 | 0 | 0 | 0 | 0 |
563 | FFPE-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
564 | FFPE-RPPA_Clustering_Consensus_Plus | 1 | 0 | 0 | 0 | 0 |
| Total | 432 | 44 | 0 | 87 | 1 |