Broad GDAC Analyses Status
integration Run for Tumor Type: PCPG
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
PCPG
179
179
175
0
179
0
179
0
179
80
179
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Gene_Status
1
0
0
0
0
3
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
4
Append_CustomClinical
0
1
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
10
CopyNumber_Gistic2
0
1
0
0
0
11
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
12
CopyNumberLowPass_Gistic2
1
0
0
0
0
13
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
15
Correlate_Clinical_vs_Methylation
1
0
0
0
0
16
Correlate_Clinical_vs_miR
1
0
0
0
0
17
Correlate_Clinical_vs_miRseq
1
0
0
0
0
18
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
19
Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
21
Correlate_Clinical_vs_Mutation
1
0
0
0
0
22
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
29
Correlate_Methylation_vs_mRNA
0
1
0
0
0
30
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
31
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
32
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
33
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
GenerateStickFigures2.0
1
0
0
0
0
35
GenerateStickFigures2CV
1
0
0
0
0
36
GenerateStickFiguresCV
1
0
0
0
0
37
iClusterPlus
1
0
0
0
0
38
LegoPlotter2.0
1
0
0
0
0
39
LegoPlotter2CV
1
0
0
0
0
40
LegoPlotterCV
1
0
0
0
0
41
Methylation_Clustering_CNMF
0
1
0
0
0
42
miR_Clustering_CNMF
1
0
0
0
0
43
miR_Clustering_Consensus_Plus
1
0
0
0
0
44
miR_FindDirectTargets
1
0
0
0
0
45
miRseq_Clustering_CNMF
0
1
0
0
0
46
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
47
miRseq_FindDirectTargets
0
1
0
0
0
48
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
49
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
50
mRNA_Clustering_CNMF
1
0
0
0
0
51
mRNA_Clustering_Consensus_Plus
1
0
0
0
0
52
mRNAseq_Clustering_CNMF
0
1
0
0
0
53
mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
54
Mutation_APOBEC
1
0
0
0
0
55
Mutation_Assessor
1
0
0
0
0
56
Mutation_CHASM
1
0
0
0
0
57
Mutation_CoOccurrence
1
0
0
0
0
58
Mutation_CoOccurrence_Custom
1
0
0
0
0
59
MutSigNozzleReport2.0
1
0
0
0
0
60
MutSigNozzleReport2CV
1
0
0
0
0
61
MutSigNozzleReportCV
1
0
0
0
0
62
MutSigPreprocess2.0
1
0
0
0
0
63
MutSigRun2.0
1
0
0
0
0
64
MutSigRun2CV
1
0
0
0
0
65
MutSigRunCV
1
0
0
0
0
66
Paradigm_mRNA
1
0
0
0
0
67
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
68
Paradigm_Prepare_mRNA
1
0
0
0
0
69
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
70
Paradigm_Prepare_RNASeq
1
0
0
0
0
71
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
72
Paradigm_Preprocess_mRNA
1
0
0
0
0
73
ParadigmPreprocess_mRNA
1
0
0
0
0
74
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
0
1
0
0
0
76
Paradigm_Preprocess_RNASeq
1
0
0
0
0
77
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
79
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
81
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
Paradigm_RNASeq
1
0
0
0
0
83
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
84
Pathway_FindEnrichedGenes
1
0
0
0
0
85
Pathway_GSEA_mRNAseq
1
0
0
0
0
86
Pathway_Hotnet
1
0
0
0
0
87
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
88
Pathway_Paradigm_mRNA
1
0
0
0
0
89
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
90
Pathway_Paradigm_RNASeq
1
0
0
0
0
91
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
92
ProcessCoverageForMutSig2.0
1
0
0
0
0
93
RPPA_Clustering_CNMF
0
1
0
0
0
94
RPPA_Clustering_Consensus_Plus
0
1
0
0
0
95
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
96
TP-Aggregate_Gene_Status
0
0
0
1
0
97
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
98
TP-Append_CustomClinical
0
0
0
1
0
99
TP-CoMut2.0
0
0
0
1
0
100
TP-CoMut2CV
0
0
0
1
0
101
TP-CoMutCV
0
0
0
1
0
102
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
103
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
104
TP-CopyNumber_Gistic2
0
0
0
1
0
105
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
106
TP-CopyNumberLowPass_Gistic2
1
0
0
0
0
107
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
108
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
109
TP-Correlate_Clinical_vs_Methylation
0
0
0
1
0
110
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
111
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
112
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
113
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
114
TP-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
115
TP-Correlate_Clinical_vs_Mutation
0
0
0
1
0
116
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
117
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
118
TP-Correlate_Clinical_vs_MutationRate
0
0
0
1
0
119
TP-Correlate_Clinical_vs_RPPA
0
0
0
1
0
120
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
121
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
122
TP-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
123
TP-Correlate_Methylation_vs_mRNA
0
0
0
1
0
124
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
125
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
126
TP-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
127
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
128
TP-GenerateStickFigures2.0
0
0
0
1
0
129
TP-GenerateStickFigures2CV
0
0
0
1
0
130
TP-GenerateStickFiguresCV
0
0
0
1
0
131
TP-iClusterPlus
0
0
0
1
0
132
TP-LegoPlotter2.0
0
0
0
1
0
133
TP-LegoPlotter2CV
0
0
0
1
0
134
TP-LegoPlotterCV
0
0
0
1
0
135
TP-Methylation_Clustering_CNMF
0
0
0
1
0
136
TP-miR_Clustering_CNMF
1
0
0
0
0
137
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
138
TP-miR_FindDirectTargets
1
0
0
0
0
139
TP-miRseq_Clustering_CNMF
0
0
0
1
0
140
TP-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
141
TP-miRseq_FindDirectTargets
0
0
0
1
0
142
TP-miRseq_Mature_Clustering_CNMF
0
0
0
1
0
143
TP-miRseq_Mature_Clustering_Consensus_Plus
0
0
0
1
0
144
TP-mRNA_Clustering_CNMF
1
0
0
0
0
145
TP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
146
TP-mRNAseq_Clustering_CNMF
0
0
0
1
0
147
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
148
TP-Mutation_APOBEC
0
0
0
1
0
149
TP-Mutation_Assessor
0
0
0
1
0
150
TP-Mutation_CHASM
0
0
0
1
0
151
TP-Mutation_CoOccurrence
0
0
0
1
0
152
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
153
TP-MutSigNozzleReport2.0
0
0
0
1
0
154
TP-MutSigNozzleReport2CV
0
0
0
1
0
155
TP-MutSigNozzleReportCV
0
0
0
1
0
156
TP-MutSigPreprocess2.0
0
0
0
1
0
157
TP-MutSigRun2.0
0
0
0
1
0
158
TP-MutSigRun2CV
0
0
0
1
0
159
TP-MutSigRunCV
0
0
0
1
0
160
TP-Paradigm_mRNA
1
0
0
0
0
161
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
162
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
163
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
164
TP-Paradigm_Prepare_RNASeq
0
0
0
1
0
165
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
166
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
167
TP-ParadigmPreprocess_mRNA
1
0
0
0
0
168
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
169
TP-Paradigm_Preprocess_RNASeq
0
0
0
1
0
170
TP-ParadigmPreprocess_RNASeq
0
0
0
1
0
171
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
172
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
173
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
174
TP-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
175
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
176
TP-Paradigm_RNASeq
0
0
0
1
0
177
TP-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
178
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
179
TP-Pathway_GSEA_mRNAseq
0
0
0
1
0
180
TP-Pathway_Hotnet
0
0
0
0
1
181
TP-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
182
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
183
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
184
TP-Pathway_Paradigm_RNASeq
0
0
0
1
0
185
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
186
TP-ProcessCoverageForMutSig2.0
0
0
0
1
0
187
TP-RPPA_Clustering_CNMF
0
0
0
1
0
188
TP-RPPA_Clustering_Consensus_Plus
0
0
0
1
0
189
TM-Aggregate_AnalysisFeatures
0
1
0
0
0
190
TM-Aggregate_Gene_Status
1
0
0
0
0
191
TM-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
192
TM-Append_CustomClinical
0
1
0
0
0
193
TM-CoMut2.0
1
0
0
0
0
194
TM-CoMut2CV
1
0
0
0
0
195
TM-CoMutCV
1
0
0
0
0
196
TM-CopyNumber_Clustering_CNMF
1
0
0
0
0
197
TM-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
198
TM-CopyNumber_Gistic2
0
1
0
0
0
199
TM-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
200
TM-CopyNumberLowPass_Gistic2
1
0
0
0
0
201
TM-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
202
TM-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
203
TM-Correlate_Clinical_vs_Methylation
1
0
0
0
0
204
TM-Correlate_Clinical_vs_miR
1
0
0
0
0
205
TM-Correlate_Clinical_vs_miRseq
1
0
0
0
0
206
TM-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
207
TM-Correlate_Clinical_vs_mRNA
1
0
0
0
0
208
TM-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
209
TM-Correlate_Clinical_vs_Mutation
1
0
0
0
0
210
TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
211
TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
212
TM-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
213
TM-Correlate_Clinical_vs_RPPA
1
0
0
0
0
214
TM-Correlate_CopyNumber_vs_miR
1
0
0
0
0
215
TM-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
216
TM-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
217
TM-Correlate_Methylation_vs_mRNA
1
0
0
0
0
218
TM-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
219
TM-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
220
TM-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
221
TM-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
222
TM-GenerateStickFigures2.0
1
0
0
0
0
223
TM-GenerateStickFigures2CV
1
0
0
0
0
224
TM-GenerateStickFiguresCV
1
0
0
0
0
225
TM-iClusterPlus
1
0
0
0
0
226
TM-LegoPlotter2.0
1
0
0
0
0
227
TM-LegoPlotter2CV
1
0
0
0
0
228
TM-LegoPlotterCV
1
0
0
0
0
229
TM-Methylation_Clustering_CNMF
0
1
0
0
0
230
TM-miR_Clustering_CNMF
1
0
0
0
0
231
TM-miR_Clustering_Consensus_Plus
1
0
0
0
0
232
TM-miR_FindDirectTargets
1
0
0
0
0
233
TM-miRseq_Clustering_CNMF
1
0
0
0
0
234
TM-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
235
TM-miRseq_FindDirectTargets
1
0
0
0
0
236
TM-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
237
TM-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
238
TM-mRNA_Clustering_CNMF
1
0
0
0
0
239
TM-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
240
TM-mRNAseq_Clustering_CNMF
1
0
0
0
0
241
TM-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
242
TM-Mutation_APOBEC
1
0
0
0
0
243
TM-Mutation_Assessor
1
0
0
0
0
244
TM-Mutation_CHASM
1
0
0
0
0
245
TM-Mutation_CoOccurrence
1
0
0
0
0
246
TM-Mutation_CoOccurrence_Custom
1
0
0
0
0
247
TM-MutSigNozzleReport2.0
1
0
0
0
0
248
TM-MutSigNozzleReport2CV
1
0
0
0
0
249
TM-MutSigNozzleReportCV
1
0
0
0
0
250
TM-MutSigPreprocess2.0
1
0
0
0
0
251
TM-MutSigRun2.0
1
0
0
0
0
252
TM-MutSigRun2CV
1
0
0
0
0
253
TM-MutSigRunCV
1
0
0
0
0
254
TM-Paradigm_mRNA
1
0
0
0
0
255
TM-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
256
TM-Paradigm_Prepare_mRNA
1
0
0
0
0
257
TM-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
258
TM-Paradigm_Prepare_RNASeq
1
0
0
0
0
259
TM-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
260
TM-Paradigm_Preprocess_mRNA
1
0
0
0
0
261
TM-ParadigmPreprocess_mRNA
1
0
0
0
0
262
TM-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
263
TM-ParadigmPreprocess_RNASeq
0
1
0
0
0
264
TM-Paradigm_Preprocess_RNASeq
1
0
0
0
0
265
TM-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
266
TM-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
267
TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
268
TM-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
269
TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
270
TM-Paradigm_RNASeq
1
0
0
0
0
271
TM-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
272
TM-Pathway_FindEnrichedGenes
1
0
0
0
0
273
TM-Pathway_GSEA_mRNAseq
1
0
0
0
0
274
TM-Pathway_Hotnet
1
0
0
0
0
275
TM-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
276
TM-Pathway_Paradigm_mRNA
1
0
0
0
0
277
TM-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
278
TM-Pathway_Paradigm_RNASeq
1
0
0
0
0
279
TM-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
280
TM-ProcessCoverageForMutSig2.0
1
0
0
0
0
281
TM-RPPA_Clustering_CNMF
1
0
0
0
0
282
TM-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
283
TAP-Aggregate_AnalysisFeatures
0
1
0
0
0
284
TAP-Aggregate_Gene_Status
1
0
0
0
0
285
TAP-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
286
TAP-Append_CustomClinical
0
1
0
0
0
287
TAP-CoMut2.0
1
0
0
0
0
288
TAP-CoMut2CV
1
0
0
0
0
289
TAP-CoMutCV
1
0
0
0
0
290
TAP-CopyNumber_Clustering_CNMF
1
0
0
0
0
291
TAP-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
292
TAP-CopyNumber_Gistic2
0
1
0
0
0
293
TAP-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
294
TAP-CopyNumberLowPass_Gistic2
1
0
0
0
0
295
TAP-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
296
TAP-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
297
TAP-Correlate_Clinical_vs_Methylation
1
0
0
0
0
298
TAP-Correlate_Clinical_vs_miR
1
0
0
0
0
299
TAP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
300
TAP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
301
TAP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
302
TAP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
303
TAP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
304
TAP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
305
TAP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
306
TAP-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
307
TAP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
308
TAP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
309
TAP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
310
TAP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
311
TAP-Correlate_Methylation_vs_mRNA
1
0
0
0
0
312
TAP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
313
TAP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
314
TAP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
315
TAP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
316
TAP-GenerateStickFigures2.0
1
0
0
0
0
317
TAP-GenerateStickFigures2CV
1
0
0
0
0
318
TAP-GenerateStickFiguresCV
1
0
0
0
0
319
TAP-iClusterPlus
1
0
0
0
0
320
TAP-LegoPlotter2.0
1
0
0
0
0
321
TAP-LegoPlotter2CV
1
0
0
0
0
322
TAP-LegoPlotterCV
1
0
0
0
0
323
TAP-Methylation_Clustering_CNMF
0
1
0
0
0
324
TAP-miR_Clustering_CNMF
1
0
0
0
0
325
TAP-miR_Clustering_Consensus_Plus
1
0
0
0
0
326
TAP-miR_FindDirectTargets
1
0
0
0
0
327
TAP-miRseq_Clustering_CNMF
1
0
0
0
0
328
TAP-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
329
TAP-miRseq_FindDirectTargets
1
0
0
0
0
330
TAP-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
331
TAP-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
332
TAP-mRNA_Clustering_CNMF
1
0
0
0
0
333
TAP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
334
TAP-mRNAseq_Clustering_CNMF
1
0
0
0
0
335
TAP-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
336
TAP-Mutation_APOBEC
1
0
0
0
0
337
TAP-Mutation_Assessor
1
0
0
0
0
338
TAP-Mutation_CHASM
1
0
0
0
0
339
TAP-Mutation_CoOccurrence
1
0
0
0
0
340
TAP-Mutation_CoOccurrence_Custom
1
0
0
0
0
341
TAP-MutSigNozzleReport2.0
1
0
0
0
0
342
TAP-MutSigNozzleReport2CV
1
0
0
0
0
343
TAP-MutSigNozzleReportCV
1
0
0
0
0
344
TAP-MutSigPreprocess2.0
1
0
0
0
0
345
TAP-MutSigRun2.0
1
0
0
0
0
346
TAP-MutSigRun2CV
1
0
0
0
0
347
TAP-MutSigRunCV
1
0
0
0
0
348
TAP-Paradigm_mRNA
1
0
0
0
0
349
TAP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
350
TAP-Paradigm_Prepare_mRNA
1
0
0
0
0
351
TAP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
352
TAP-Paradigm_Prepare_RNASeq
1
0
0
0
0
353
TAP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
354
TAP-Paradigm_Preprocess_mRNA
1
0
0
0
0
355
TAP-ParadigmPreprocess_mRNA
1
0
0
0
0
356
TAP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
357
TAP-ParadigmPreprocess_RNASeq
0
1
0
0
0
358
TAP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
359
TAP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
360
TAP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
361
TAP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
362
TAP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
363
TAP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
364
TAP-Paradigm_RNASeq
1
0
0
0
0
365
TAP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
366
TAP-Pathway_FindEnrichedGenes
1
0
0
0
0
367
TAP-Pathway_GSEA_mRNAseq
1
0
0
0
0
368
TAP-Pathway_Hotnet
1
0
0
0
0
369
TAP-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
370
TAP-Pathway_Paradigm_mRNA
1
0
0
0
0
371
TAP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
372
TAP-Pathway_Paradigm_RNASeq
1
0
0
0
0
373
TAP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
374
TAP-ProcessCoverageForMutSig2.0
1
0
0
0
0
375
TAP-RPPA_Clustering_CNMF
1
0
0
0
0
376
TAP-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
377
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
378
NT-Aggregate_Gene_Status
1
0
0
0
0
379
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
380
NT-Append_CustomClinical
0
1
0
0
0
381
NT-CoMut2.0
1
0
0
0
0
382
NT-CoMut2CV
1
0
0
0
0
383
NT-CoMutCV
1
0
0
0
0
384
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
385
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
386
NT-CopyNumber_Gistic2
0
1
0
0
0
387
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
388
NT-CopyNumberLowPass_Gistic2
1
0
0
0
0
389
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
390
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
391
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
392
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
393
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
394
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
395
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
396
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
397
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
398
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
399
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
400
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
401
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
402
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
403
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
404
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
405
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
406
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
407
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
408
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
409
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
410
NT-GenerateStickFigures2.0
1
0
0
0
0
411
NT-GenerateStickFigures2CV
1
0
0
0
0
412
NT-GenerateStickFiguresCV
1
0
0
0
0
413
NT-iClusterPlus
1
0
0
0
0
414
NT-LegoPlotter2.0
1
0
0
0
0
415
NT-LegoPlotter2CV
1
0
0
0
0
416
NT-LegoPlotterCV
1
0
0
0
0
417
NT-Methylation_Clustering_CNMF
0
1
0
0
0
418
NT-miR_Clustering_CNMF
1
0
0
0
0
419
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
420
NT-miR_FindDirectTargets
1
0
0
0
0
421
NT-miRseq_Clustering_CNMF
1
0
0
0
0
422
NT-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
423
NT-miRseq_FindDirectTargets
1
0
0
0
0
424
NT-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
425
NT-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
426
NT-mRNA_Clustering_CNMF
1
0
0
0
0
427
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
428
NT-mRNAseq_Clustering_CNMF
1
0
0
0
0
429
NT-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
430
NT-Mutation_APOBEC
1
0
0
0
0
431
NT-Mutation_Assessor
1
0
0
0
0
432
NT-Mutation_CHASM
1
0
0
0
0
433
NT-Mutation_CoOccurrence
1
0
0
0
0
434
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
435
NT-MutSigNozzleReport2.0
1
0
0
0
0
436
NT-MutSigNozzleReport2CV
1
0
0
0
0
437
NT-MutSigNozzleReportCV
1
0
0
0
0
438
NT-MutSigPreprocess2.0
1
0
0
0
0
439
NT-MutSigRun2.0
1
0
0
0
0
440
NT-MutSigRun2CV
1
0
0
0
0
441
NT-MutSigRunCV
1
0
0
0
0
442
NT-Paradigm_mRNA
1
0
0
0
0
443
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
444
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
445
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
446
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
447
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
448
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
449
NT-ParadigmPreprocess_mRNA
1
0
0
0
0
450
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
451
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
452
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
453
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
454
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
455
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
456
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
457
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
458
NT-Paradigm_RNASeq
1
0
0
0
0
459
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
460
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
461
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
462
NT-Pathway_Hotnet
1
0
0
0
0
463
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
464
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
465
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
466
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
467
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
468
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
469
NT-RPPA_Clustering_CNMF
1
0
0
0
0
470
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
471
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
472
NB-Aggregate_Gene_Status
1
0
0
0
0
473
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
474
NB-Append_CustomClinical
0
1
0
0
0
475
NB-CoMut2.0
1
0
0
0
0
476
NB-CoMut2CV
1
0
0
0
0
477
NB-CoMutCV
1
0
0
0
0
478
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
479
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
480
NB-CopyNumber_Gistic2
0
1
0
0
0
481
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
482
NB-CopyNumberLowPass_Gistic2
1
0
0
0
0
483
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
484
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
485
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
486
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
487
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
488
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
489
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
490
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
491
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
492
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
493
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
494
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
495
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
496
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
497
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
498
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
499
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
500
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
501
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
502
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
503
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
504
NB-GenerateStickFigures2.0
1
0
0
0
0
505
NB-GenerateStickFigures2CV
1
0
0
0
0
506
NB-GenerateStickFiguresCV
1
0
0
0
0
507
NB-iClusterPlus
1
0
0
0
0
508
NB-LegoPlotter2.0
1
0
0
0
0
509
NB-LegoPlotter2CV
1
0
0
0
0
510
NB-LegoPlotterCV
1
0
0
0
0
511
NB-Methylation_Clustering_CNMF
1
0
0
0
0
512
NB-miR_Clustering_CNMF
1
0
0
0
0
513
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
514
NB-miR_FindDirectTargets
1
0
0
0
0
515
NB-miRseq_Clustering_CNMF
1
0
0
0
0
516
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
517
NB-miRseq_FindDirectTargets
1
0
0
0
0
518
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
519
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
520
NB-mRNA_Clustering_CNMF
1
0
0
0
0
521
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
522
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
523
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
524
NB-Mutation_APOBEC
1
0
0
0
0
525
NB-Mutation_Assessor
1
0
0
0
0
526
NB-Mutation_CHASM
1
0
0
0
0
527
NB-Mutation_CoOccurrence
1
0
0
0
0
528
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
529
NB-MutSigNozzleReport2.0
1
0
0
0
0
530
NB-MutSigNozzleReport2CV
1
0
0
0
0
531
NB-MutSigNozzleReportCV
1
0
0
0
0
532
NB-MutSigPreprocess2.0
1
0
0
0
0
533
NB-MutSigRun2.0
1
0
0
0
0
534
NB-MutSigRun2CV
1
0
0
0
0
535
NB-MutSigRunCV
1
0
0
0
0
536
NB-Paradigm_mRNA
1
0
0
0
0
537
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
538
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
539
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
540
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
541
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
542
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
543
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
544
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
545
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
546
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
547
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
548
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
549
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
550
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
551
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
552
NB-Paradigm_RNASeq
1
0
0
0
0
553
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
554
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
555
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
556
NB-Pathway_Hotnet
1
0
0
0
0
557
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
558
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
559
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
560
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
561
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
562
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
563
NB-RPPA_Clustering_CNMF
1
0
0
0
0
564
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
463
33
0
67
1
This table generated on Fri Jun 10 09:06:26 2016