Broad GDAC Analyses Status
integration Run for Tumor Type: READ
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
READ
171
171
165
35
165
69
166
0
143
131
69
122
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Gene_Status
1
0
0
0
0
3
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
4
Append_CustomClinical
0
1
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
10
CopyNumber_Gistic2
0
1
0
0
0
11
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
12
CopyNumberLowPass_Gistic2
0
1
0
0
0
13
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
15
Correlate_Clinical_vs_Methylation
1
0
0
0
0
16
Correlate_Clinical_vs_miR
1
0
0
0
0
17
Correlate_Clinical_vs_miRseq
1
0
0
0
0
18
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
19
Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
21
Correlate_Clinical_vs_Mutation
1
0
0
0
0
22
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
29
Correlate_Methylation_vs_mRNA
0
1
0
0
0
30
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
31
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
32
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
33
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
GenerateStickFigures2.0
1
0
0
0
0
35
GenerateStickFigures2CV
1
0
0
0
0
36
GenerateStickFiguresCV
1
0
0
0
0
37
iClusterPlus
1
0
0
0
0
38
LegoPlotter2.0
1
0
0
0
0
39
LegoPlotter2CV
1
0
0
0
0
40
LegoPlotterCV
1
0
0
0
0
41
Methylation_Clustering_CNMF
0
1
0
0
0
42
miR_Clustering_CNMF
1
0
0
0
0
43
miR_Clustering_Consensus_Plus
1
0
0
0
0
44
miR_FindDirectTargets
1
0
0
0
0
45
miRseq_Clustering_CNMF
0
1
0
0
0
46
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
47
miRseq_FindDirectTargets
0
1
0
0
0
48
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
49
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
50
mRNA_Clustering_CNMF
0
1
0
0
0
51
mRNA_Clustering_Consensus_Plus
0
1
0
0
0
52
mRNAseq_Clustering_CNMF
0
1
0
0
0
53
mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
54
Mutation_APOBEC
1
0
0
0
0
55
Mutation_Assessor
1
0
0
0
0
56
Mutation_CHASM
1
0
0
0
0
57
Mutation_CoOccurrence
1
0
0
0
0
58
Mutation_CoOccurrence_Custom
1
0
0
0
0
59
MutSigNozzleReport2.0
1
0
0
0
0
60
MutSigNozzleReport2CV
1
0
0
0
0
61
MutSigNozzleReportCV
1
0
0
0
0
62
MutSigPreprocess2.0
1
0
0
0
0
63
MutSigRun2.0
1
0
0
0
0
64
MutSigRun2CV
1
0
0
0
0
65
MutSigRunCV
1
0
0
0
0
66
Paradigm_mRNA
1
0
0
0
0
67
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
68
Paradigm_Prepare_mRNA
1
0
0
0
0
69
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
70
Paradigm_Prepare_RNASeq
1
0
0
0
0
71
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
72
ParadigmPreprocess_mRNA
0
1
0
0
0
73
Paradigm_Preprocess_mRNA
1
0
0
0
0
74
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
0
1
0
0
0
76
Paradigm_Preprocess_RNASeq
1
0
0
0
0
77
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
79
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
81
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
Paradigm_RNASeq
1
0
0
0
0
83
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
84
Pathway_FindEnrichedGenes
1
0
0
0
0
85
Pathway_GSEA_mRNAseq
1
0
0
0
0
86
Pathway_Hotnet
1
0
0
0
0
87
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
88
Pathway_Paradigm_mRNA
1
0
0
0
0
89
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
90
Pathway_Paradigm_RNASeq
1
0
0
0
0
91
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
92
ProcessCoverageForMutSig2.0
1
0
0
0
0
93
RPPA_Clustering_CNMF
0
1
0
0
0
94
RPPA_Clustering_Consensus_Plus
0
1
0
0
0
95
TR-Aggregate_AnalysisFeatures
0
1
0
0
0
96
TR-Aggregate_Gene_Status
1
0
0
0
0
97
TR-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
98
TR-Append_CustomClinical
1
0
0
0
0
99
TR-CoMut2.0
1
0
0
0
0
100
TR-CoMut2CV
1
0
0
0
0
101
TR-CoMutCV
1
0
0
0
0
102
TR-CopyNumber_Clustering_CNMF
1
0
0
0
0
103
TR-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
104
TR-CopyNumber_Gistic2
0
1
0
0
0
105
TR-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
106
TR-CopyNumberLowPass_Gistic2
1
0
0
0
0
107
TR-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
108
TR-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
109
TR-Correlate_Clinical_vs_Methylation
1
0
0
0
0
110
TR-Correlate_Clinical_vs_miR
1
0
0
0
0
111
TR-Correlate_Clinical_vs_miRseq
1
0
0
0
0
112
TR-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
113
TR-Correlate_Clinical_vs_mRNA
1
0
0
0
0
114
TR-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
115
TR-Correlate_Clinical_vs_Mutation
1
0
0
0
0
116
TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
117
TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
118
TR-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
119
TR-Correlate_Clinical_vs_RPPA
1
0
0
0
0
120
TR-Correlate_CopyNumber_vs_miR
1
0
0
0
0
121
TR-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
122
TR-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
123
TR-Correlate_Methylation_vs_mRNA
1
0
0
0
0
124
TR-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
125
TR-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
126
TR-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
127
TR-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
128
TR-GenerateStickFigures2.0
1
0
0
0
0
129
TR-GenerateStickFigures2CV
1
0
0
0
0
130
TR-GenerateStickFiguresCV
1
0
0
0
0
131
TR-iClusterPlus
1
0
0
0
0
132
TR-LegoPlotter2.0
1
0
0
0
0
133
TR-LegoPlotter2CV
1
0
0
0
0
134
TR-LegoPlotterCV
1
0
0
0
0
135
TR-Methylation_Clustering_CNMF
0
1
0
0
0
136
TR-miR_Clustering_CNMF
1
0
0
0
0
137
TR-miR_Clustering_Consensus_Plus
1
0
0
0
0
138
TR-miR_FindDirectTargets
1
0
0
0
0
139
TR-miRseq_Clustering_CNMF
1
0
0
0
0
140
TR-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
141
TR-miRseq_FindDirectTargets
1
0
0
0
0
142
TR-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
143
TR-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
144
TR-mRNA_Clustering_CNMF
1
0
0
0
0
145
TR-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
146
TR-mRNAseq_Clustering_CNMF
1
0
0
0
0
147
TR-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
148
TR-Mutation_APOBEC
1
0
0
0
0
149
TR-Mutation_Assessor
1
0
0
0
0
150
TR-Mutation_CHASM
1
0
0
0
0
151
TR-Mutation_CoOccurrence
1
0
0
0
0
152
TR-Mutation_CoOccurrence_Custom
1
0
0
0
0
153
TR-MutSigNozzleReport2.0
1
0
0
0
0
154
TR-MutSigNozzleReport2CV
1
0
0
0
0
155
TR-MutSigNozzleReportCV
1
0
0
0
0
156
TR-MutSigPreprocess2.0
1
0
0
0
0
157
TR-MutSigRun2.0
1
0
0
0
0
158
TR-MutSigRun2CV
1
0
0
0
0
159
TR-MutSigRunCV
1
0
0
0
0
160
TR-Paradigm_mRNA
1
0
0
0
0
161
TR-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
162
TR-Paradigm_Prepare_mRNA
1
0
0
0
0
163
TR-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
164
TR-Paradigm_Prepare_RNASeq
1
0
0
0
0
165
TR-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
166
TR-Paradigm_Preprocess_mRNA
1
0
0
0
0
167
TR-ParadigmPreprocess_mRNA
1
0
0
0
0
168
TR-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
169
TR-ParadigmPreprocess_RNASeq
0
1
0
0
0
170
TR-Paradigm_Preprocess_RNASeq
1
0
0
0
0
171
TR-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
172
TR-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
173
TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
174
TR-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
175
TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
176
TR-Paradigm_RNASeq
1
0
0
0
0
177
TR-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
178
TR-Pathway_FindEnrichedGenes
1
0
0
0
0
179
TR-Pathway_GSEA_mRNAseq
1
0
0
0
0
180
TR-Pathway_Hotnet
1
0
0
0
0
181
TR-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
182
TR-Pathway_Paradigm_mRNA
1
0
0
0
0
183
TR-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
184
TR-Pathway_Paradigm_RNASeq
1
0
0
0
0
185
TR-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
186
TR-ProcessCoverageForMutSig2.0
1
0
0
0
0
187
TR-RPPA_Clustering_CNMF
1
0
0
0
0
188
TR-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
189
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
190
TP-Aggregate_Gene_Status
0
0
0
1
0
191
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
192
TP-Append_CustomClinical
0
0
0
1
0
193
TP-CoMut2.0
1
0
0
0
0
194
TP-CoMut2CV
0
0
0
1
0
195
TP-CoMutCV
0
0
0
1
0
196
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
197
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
198
TP-CopyNumber_Gistic2
0
0
0
1
0
199
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
200
TP-CopyNumberLowPass_Gistic2
0
0
0
1
0
201
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
202
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
203
TP-Correlate_Clinical_vs_Methylation
0
0
0
1
0
204
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
205
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
206
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
207
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
208
TP-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
209
TP-Correlate_Clinical_vs_Mutation
0
0
0
1
0
210
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
211
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
212
TP-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
213
TP-Correlate_Clinical_vs_RPPA
0
0
0
1
0
214
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
215
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
216
TP-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
217
TP-Correlate_Methylation_vs_mRNA
0
0
0
1
0
218
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
219
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
220
TP-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
221
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
222
TP-GenerateStickFigures2.0
1
0
0
0
0
223
TP-GenerateStickFigures2CV
0
0
0
1
0
224
TP-GenerateStickFiguresCV
0
0
0
1
0
225
TP-iClusterPlus
0
0
0
1
0
226
TP-LegoPlotter2.0
1
0
0
0
0
227
TP-LegoPlotter2CV
0
0
0
1
0
228
TP-LegoPlotterCV
0
0
0
1
0
229
TP-Methylation_Clustering_CNMF
0
0
0
1
0
230
TP-miR_Clustering_CNMF
1
0
0
0
0
231
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
232
TP-miR_FindDirectTargets
1
0
0
0
0
233
TP-miRseq_Clustering_CNMF
0
0
0
1
0
234
TP-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
235
TP-miRseq_FindDirectTargets
0
0
0
1
0
236
TP-miRseq_Mature_Clustering_CNMF
0
0
0
1
0
237
TP-miRseq_Mature_Clustering_Consensus_Plus
0
0
0
1
0
238
TP-mRNA_Clustering_CNMF
0
0
0
1
0
239
TP-mRNA_Clustering_Consensus_Plus
0
0
0
1
0
240
TP-mRNAseq_Clustering_CNMF
0
0
0
1
0
241
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
242
TP-Mutation_APOBEC
0
0
0
1
0
243
TP-Mutation_Assessor
0
0
0
1
0
244
TP-Mutation_CHASM
0
0
0
1
0
245
TP-Mutation_CoOccurrence
0
0
0
1
0
246
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
247
TP-MutSigNozzleReport2.0
1
0
0
0
0
248
TP-MutSigNozzleReport2CV
0
0
0
1
0
249
TP-MutSigNozzleReportCV
0
0
0
1
0
250
TP-MutSigPreprocess2.0
0
0
0
1
0
251
TP-MutSigRun2.0
1
0
0
0
0
252
TP-MutSigRun2CV
0
0
0
1
0
253
TP-MutSigRunCV
0
0
0
1
0
254
TP-Paradigm_mRNA
0
0
0
1
0
255
TP-Paradigm_mRNA_And_CopyNumber
0
0
0
1
0
256
TP-Paradigm_Prepare_mRNA
0
0
0
1
0
257
TP-Paradigm_Prepare_mRNA_And_Copy_Number
0
0
0
1
0
258
TP-Paradigm_Prepare_RNASeq
0
0
0
1
0
259
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
260
TP-Paradigm_Preprocess_mRNA
0
0
0
1
0
261
TP-ParadigmPreprocess_mRNA
0
0
0
1
0
262
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
0
0
0
1
0
263
TP-Paradigm_Preprocess_RNASeq
0
0
0
1
0
264
TP-ParadigmPreprocess_RNASeq
0
0
0
1
0
265
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
266
TP-Paradigm_Report_Preprocess_mRNA
0
0
0
1
0
267
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
0
0
0
1
0
268
TP-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
269
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
270
TP-Paradigm_RNASeq
0
0
0
1
0
271
TP-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
272
TP-Pathway_FindEnrichedGenes
0
0
0
1
0
273
TP-Pathway_GSEA_mRNAseq
0
0
0
1
0
274
TP-Pathway_Hotnet
0
0
0
0
1
275
TP-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
276
TP-Pathway_Paradigm_mRNA
0
0
0
1
0
277
TP-Pathway_Paradigm_mRNA_And_Copy_Number
0
0
0
1
0
278
TP-Pathway_Paradigm_RNASeq
0
0
0
1
0
279
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
280
TP-ProcessCoverageForMutSig2.0
0
0
0
0
1
281
TP-RPPA_Clustering_CNMF
0
0
0
1
0
282
TP-RPPA_Clustering_Consensus_Plus
0
0
0
1
0
283
NT-Aggregate_AnalysisFeatures
0
1
0
0
0
284
NT-Aggregate_Gene_Status
1
0
0
0
0
285
NT-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
286
NT-Append_CustomClinical
0
1
0
0
0
287
NT-CoMut2.0
1
0
0
0
0
288
NT-CoMut2CV
1
0
0
0
0
289
NT-CoMutCV
1
0
0
0
0
290
NT-CopyNumber_Clustering_CNMF
1
0
0
0
0
291
NT-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
292
NT-CopyNumber_Gistic2
0
1
0
0
0
293
NT-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
294
NT-CopyNumberLowPass_Gistic2
0
1
0
0
0
295
NT-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
296
NT-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
297
NT-Correlate_Clinical_vs_Methylation
1
0
0
0
0
298
NT-Correlate_Clinical_vs_miR
1
0
0
0
0
299
NT-Correlate_Clinical_vs_miRseq
1
0
0
0
0
300
NT-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
301
NT-Correlate_Clinical_vs_mRNA
1
0
0
0
0
302
NT-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
303
NT-Correlate_Clinical_vs_Mutation
1
0
0
0
0
304
NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
305
NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
306
NT-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
307
NT-Correlate_Clinical_vs_RPPA
1
0
0
0
0
308
NT-Correlate_CopyNumber_vs_miR
1
0
0
0
0
309
NT-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
310
NT-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
311
NT-Correlate_Methylation_vs_mRNA
1
0
0
0
0
312
NT-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
313
NT-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
314
NT-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
315
NT-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
316
NT-GenerateStickFigures2.0
1
0
0
0
0
317
NT-GenerateStickFigures2CV
1
0
0
0
0
318
NT-GenerateStickFiguresCV
1
0
0
0
0
319
NT-iClusterPlus
1
0
0
0
0
320
NT-LegoPlotter2.0
1
0
0
0
0
321
NT-LegoPlotter2CV
1
0
0
0
0
322
NT-LegoPlotterCV
1
0
0
0
0
323
NT-Methylation_Clustering_CNMF
0
1
0
0
0
324
NT-miR_Clustering_CNMF
1
0
0
0
0
325
NT-miR_Clustering_Consensus_Plus
1
0
0
0
0
326
NT-miR_FindDirectTargets
1
0
0
0
0
327
NT-miRseq_Clustering_CNMF
1
0
0
0
0
328
NT-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
329
NT-miRseq_FindDirectTargets
1
0
0
0
0
330
NT-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
331
NT-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
332
NT-mRNA_Clustering_CNMF
1
0
0
0
0
333
NT-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
334
NT-mRNAseq_Clustering_CNMF
1
0
0
0
0
335
NT-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
336
NT-Mutation_APOBEC
1
0
0
0
0
337
NT-Mutation_Assessor
1
0
0
0
0
338
NT-Mutation_CHASM
1
0
0
0
0
339
NT-Mutation_CoOccurrence
1
0
0
0
0
340
NT-Mutation_CoOccurrence_Custom
1
0
0
0
0
341
NT-MutSigNozzleReport2.0
1
0
0
0
0
342
NT-MutSigNozzleReport2CV
1
0
0
0
0
343
NT-MutSigNozzleReportCV
1
0
0
0
0
344
NT-MutSigPreprocess2.0
1
0
0
0
0
345
NT-MutSigRun2.0
1
0
0
0
0
346
NT-MutSigRun2CV
1
0
0
0
0
347
NT-MutSigRunCV
1
0
0
0
0
348
NT-Paradigm_mRNA
1
0
0
0
0
349
NT-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
350
NT-Paradigm_Prepare_mRNA
1
0
0
0
0
351
NT-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
352
NT-Paradigm_Prepare_RNASeq
1
0
0
0
0
353
NT-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
354
NT-ParadigmPreprocess_mRNA
0
1
0
0
0
355
NT-Paradigm_Preprocess_mRNA
1
0
0
0
0
356
NT-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
357
NT-ParadigmPreprocess_RNASeq
0
1
0
0
0
358
NT-Paradigm_Preprocess_RNASeq
1
0
0
0
0
359
NT-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
360
NT-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
361
NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
362
NT-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
363
NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
364
NT-Paradigm_RNASeq
1
0
0
0
0
365
NT-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
366
NT-Pathway_FindEnrichedGenes
1
0
0
0
0
367
NT-Pathway_GSEA_mRNAseq
1
0
0
0
0
368
NT-Pathway_Hotnet
1
0
0
0
0
369
NT-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
370
NT-Pathway_Paradigm_mRNA
1
0
0
0
0
371
NT-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
372
NT-Pathway_Paradigm_RNASeq
1
0
0
0
0
373
NT-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
374
NT-ProcessCoverageForMutSig2.0
1
0
0
0
0
375
NT-RPPA_Clustering_CNMF
1
0
0
0
0
376
NT-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
377
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
378
NB-Aggregate_Gene_Status
1
0
0
0
0
379
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
380
NB-Append_CustomClinical
0
1
0
0
0
381
NB-CoMut2.0
1
0
0
0
0
382
NB-CoMut2CV
1
0
0
0
0
383
NB-CoMutCV
1
0
0
0
0
384
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
385
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
386
NB-CopyNumber_Gistic2
0
1
0
0
0
387
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
388
NB-CopyNumberLowPass_Gistic2
0
1
0
0
0
389
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
390
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
391
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
392
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
393
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
394
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
395
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
396
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
397
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
398
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
399
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
400
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
401
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
402
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
403
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
404
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
405
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
406
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
407
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
408
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
409
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
410
NB-GenerateStickFigures2.0
1
0
0
0
0
411
NB-GenerateStickFigures2CV
1
0
0
0
0
412
NB-GenerateStickFiguresCV
1
0
0
0
0
413
NB-iClusterPlus
1
0
0
0
0
414
NB-LegoPlotter2.0
1
0
0
0
0
415
NB-LegoPlotter2CV
1
0
0
0
0
416
NB-LegoPlotterCV
1
0
0
0
0
417
NB-Methylation_Clustering_CNMF
1
0
0
0
0
418
NB-miR_Clustering_CNMF
1
0
0
0
0
419
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
420
NB-miR_FindDirectTargets
1
0
0
0
0
421
NB-miRseq_Clustering_CNMF
1
0
0
0
0
422
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
423
NB-miRseq_FindDirectTargets
1
0
0
0
0
424
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
425
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
426
NB-mRNA_Clustering_CNMF
1
0
0
0
0
427
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
428
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
429
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
430
NB-Mutation_APOBEC
1
0
0
0
0
431
NB-Mutation_Assessor
1
0
0
0
0
432
NB-Mutation_CHASM
1
0
0
0
0
433
NB-Mutation_CoOccurrence
1
0
0
0
0
434
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
435
NB-MutSigNozzleReport2.0
1
0
0
0
0
436
NB-MutSigNozzleReport2CV
1
0
0
0
0
437
NB-MutSigNozzleReportCV
1
0
0
0
0
438
NB-MutSigPreprocess2.0
1
0
0
0
0
439
NB-MutSigRun2.0
1
0
0
0
0
440
NB-MutSigRun2CV
1
0
0
0
0
441
NB-MutSigRunCV
1
0
0
0
0
442
NB-Paradigm_mRNA
1
0
0
0
0
443
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
444
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
445
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
446
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
447
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
448
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
449
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
450
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
451
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
452
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
453
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
454
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
455
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
456
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
457
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
458
NB-Paradigm_RNASeq
1
0
0
0
0
459
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
460
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
461
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
462
NB-Pathway_Hotnet
1
0
0
0
0
463
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
464
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
465
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
466
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
467
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
468
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
469
NB-RPPA_Clustering_CNMF
1
0
0
0
0
470
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
357
34
0
77
2
This table generated on Fri Jun 10 09:06:28 2016