Broad GDAC Analyses Status
integration Run for Tumor Type: SARC

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
SARC2612612570261025902592232520

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_AnalysisFeatures01000
2Aggregate_Gene_Status10000
3Aggregate_Molecular_Subtype_Clusters10000
4Append_CustomClinical01000
5CoMut2.010000
6CoMut2CV10000
7CoMutCV10000
8CopyNumber_Clustering_CNMF10000
9CopyNumber_Clustering_CNMF_thresholded10000
10CopyNumber_Gistic201000
11CopyNumber_Gistic2_Postprocess_Focal10000
12CopyNumberLowPass_Gistic210000
13Correlate_Clinical_vs_CopyNumber_Arm10000
14Correlate_Clinical_vs_CopyNumber_Focal10000
15Correlate_Clinical_vs_Methylation10000
16Correlate_Clinical_vs_miR10000
17Correlate_Clinical_vs_miRseq10000
18Correlate_Clinical_vs_Molecular_Subtypes10000
19Correlate_Clinical_vs_mRNA10000
20Correlate_Clinical_vs_mRNAseq10000
21Correlate_Clinical_vs_Mutation10000
22Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
23Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
24Correlate_Clinical_vs_MutationRate10000
25Correlate_Clinical_vs_RPPA10000
26Correlate_CopyNumber_vs_miR10000
27Correlate_CopyNumber_vs_mRNA10000
28Correlate_CopyNumber_vs_mRNAseq10000
29Correlate_Methylation_vs_mRNA01000
30Correlate_molecularSubtype_vs_CopyNumber_Arm10000
31Correlate_molecularSubtype_vs_CopyNumber_Focal10000
32Correlate_molecularSubtype_vs_Mutation10000
33Correlate_mRNAseq_vs_Mutation_APOBEC10000
34GenerateStickFigures2.010000
35GenerateStickFigures2CV10000
36GenerateStickFiguresCV10000
37iClusterPlus10000
38LegoPlotter2.010000
39LegoPlotter2CV10000
40LegoPlotterCV10000
41Methylation_Clustering_CNMF01000
42miR_Clustering_CNMF10000
43miR_Clustering_Consensus_Plus10000
44miR_FindDirectTargets10000
45miRseq_Clustering_CNMF01000
46miRseq_Clustering_Consensus_Plus01000
47miRseq_FindDirectTargets01000
48miRseq_Mature_Clustering_CNMF01000
49miRseq_Mature_Clustering_Consensus_Plus01000
50mRNA_Clustering_CNMF10000
51mRNA_Clustering_Consensus_Plus10000
52mRNAseq_Clustering_CNMF01000
53mRNAseq_Clustering_Consensus_Plus01000
54Mutation_APOBEC10000
55Mutation_Assessor10000
56Mutation_CHASM10000
57Mutation_CoOccurrence10000
58Mutation_CoOccurrence_Custom10000
59MutSigNozzleReport2.010000
60MutSigNozzleReport2CV10000
61MutSigNozzleReportCV10000
62MutSigPreprocess2.010000
63MutSigRun2.010000
64MutSigRun2CV10000
65MutSigRunCV10000
66Paradigm_mRNA10000
67Paradigm_mRNA_And_CopyNumber10000
68Paradigm_Prepare_mRNA10000
69Paradigm_Prepare_mRNA_And_Copy_Number10000
70Paradigm_Prepare_RNASeq10000
71Paradigm_Prepare_RNASeq_And_Copy_Number10000
72Paradigm_Preprocess_mRNA10000
73ParadigmPreprocess_mRNA10000
74Paradigm_Preprocess_mRNA_And_Copy_Number10000
75ParadigmPreprocess_RNASeq01000
76Paradigm_Preprocess_RNASeq10000
77Paradigm_Preprocess_RNASeq_And_Copy_Number10000
78Paradigm_Report_Preprocess_mRNA10000
79Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
80Paradigm_Report_Preprocess_RNASeq10000
81Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
82Paradigm_RNASeq10000
83Paradigm_RNASeq_And_Copy_Number10000
84Pathway_FindEnrichedGenes10000
85Pathway_GSEA_mRNAseq10000
86Pathway_Hotnet10000
87Pathway_Overlaps_MSigDB_MutSig2CV10000
88Pathway_Paradigm_mRNA10000
89Pathway_Paradigm_mRNA_And_Copy_Number10000
90Pathway_Paradigm_RNASeq10000
91Pathway_Paradigm_RNASeq_And_Copy_Number10000
92ProcessCoverageForMutSig2.010000
93RPPA_Clustering_CNMF01000
94RPPA_Clustering_Consensus_Plus01000
95TR-Aggregate_AnalysisFeatures01000
96TR-Aggregate_Gene_Status10000
97TR-Aggregate_Molecular_Subtype_Clusters10000
98TR-Append_CustomClinical01000
99TR-CoMut2.010000
100TR-CoMut2CV10000
101TR-CoMutCV10000
102TR-CopyNumber_Clustering_CNMF10000
103TR-CopyNumber_Clustering_CNMF_thresholded10000
104TR-CopyNumber_Gistic201000
105TR-CopyNumber_Gistic2_Postprocess_Focal10000
106TR-CopyNumberLowPass_Gistic210000
107TR-Correlate_Clinical_vs_CopyNumber_Arm10000
108TR-Correlate_Clinical_vs_CopyNumber_Focal10000
109TR-Correlate_Clinical_vs_Methylation10000
110TR-Correlate_Clinical_vs_miR10000
111TR-Correlate_Clinical_vs_miRseq10000
112TR-Correlate_Clinical_vs_Molecular_Subtypes10000
113TR-Correlate_Clinical_vs_mRNA10000
114TR-Correlate_Clinical_vs_mRNAseq10000
115TR-Correlate_Clinical_vs_Mutation10000
116TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
117TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
118TR-Correlate_Clinical_vs_MutationRate10000
119TR-Correlate_Clinical_vs_RPPA10000
120TR-Correlate_CopyNumber_vs_miR10000
121TR-Correlate_CopyNumber_vs_mRNA10000
122TR-Correlate_CopyNumber_vs_mRNAseq10000
123TR-Correlate_Methylation_vs_mRNA10000
124TR-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
125TR-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
126TR-Correlate_molecularSubtype_vs_Mutation10000
127TR-Correlate_mRNAseq_vs_Mutation_APOBEC10000
128TR-GenerateStickFigures2.010000
129TR-GenerateStickFigures2CV10000
130TR-GenerateStickFiguresCV10000
131TR-iClusterPlus10000
132TR-LegoPlotter2.010000
133TR-LegoPlotter2CV10000
134TR-LegoPlotterCV10000
135TR-Methylation_Clustering_CNMF01000
136TR-miR_Clustering_CNMF10000
137TR-miR_Clustering_Consensus_Plus10000
138TR-miR_FindDirectTargets10000
139TR-miRseq_Clustering_CNMF10000
140TR-miRseq_Clustering_Consensus_Plus10000
141TR-miRseq_FindDirectTargets10000
142TR-miRseq_Mature_Clustering_CNMF10000
143TR-miRseq_Mature_Clustering_Consensus_Plus10000
144TR-mRNA_Clustering_CNMF10000
145TR-mRNA_Clustering_Consensus_Plus10000
146TR-mRNAseq_Clustering_CNMF10000
147TR-mRNAseq_Clustering_Consensus_Plus10000
148TR-Mutation_APOBEC10000
149TR-Mutation_Assessor10000
150TR-Mutation_CHASM10000
151TR-Mutation_CoOccurrence10000
152TR-Mutation_CoOccurrence_Custom10000
153TR-MutSigNozzleReport2.010000
154TR-MutSigNozzleReport2CV10000
155TR-MutSigNozzleReportCV10000
156TR-MutSigPreprocess2.010000
157TR-MutSigRun2.010000
158TR-MutSigRun2CV10000
159TR-MutSigRunCV10000
160TR-Paradigm_mRNA10000
161TR-Paradigm_mRNA_And_CopyNumber10000
162TR-Paradigm_Prepare_mRNA10000
163TR-Paradigm_Prepare_mRNA_And_Copy_Number10000
164TR-Paradigm_Prepare_RNASeq10000
165TR-Paradigm_Prepare_RNASeq_And_Copy_Number10000
166TR-Paradigm_Preprocess_mRNA10000
167TR-ParadigmPreprocess_mRNA10000
168TR-Paradigm_Preprocess_mRNA_And_Copy_Number10000
169TR-ParadigmPreprocess_RNASeq01000
170TR-Paradigm_Preprocess_RNASeq10000
171TR-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
172TR-Paradigm_Report_Preprocess_mRNA10000
173TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
174TR-Paradigm_Report_Preprocess_RNASeq10000
175TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
176TR-Paradigm_RNASeq10000
177TR-Paradigm_RNASeq_And_Copy_Number10000
178TR-Pathway_FindEnrichedGenes10000
179TR-Pathway_GSEA_mRNAseq10000
180TR-Pathway_Hotnet10000
181TR-Pathway_Overlaps_MSigDB_MutSig2CV10000
182TR-Pathway_Paradigm_mRNA10000
183TR-Pathway_Paradigm_mRNA_And_Copy_Number10000
184TR-Pathway_Paradigm_RNASeq10000
185TR-Pathway_Paradigm_RNASeq_And_Copy_Number10000
186TR-ProcessCoverageForMutSig2.010000
187TR-RPPA_Clustering_CNMF10000
188TR-RPPA_Clustering_Consensus_Plus10000
189TP-Aggregate_AnalysisFeatures00010
190TP-Aggregate_Gene_Status00010
191TP-Aggregate_Molecular_Subtype_Clusters00010
192TP-Append_CustomClinical00010
193TP-CoMut2.000010
194TP-CoMut2CV00010
195TP-CoMutCV00010
196TP-CopyNumber_Clustering_CNMF00010
197TP-CopyNumber_Clustering_CNMF_thresholded00010
198TP-CopyNumber_Gistic200010
199TP-CopyNumber_Gistic2_Postprocess_Focal00010
200TP-CopyNumberLowPass_Gistic210000
201TP-Correlate_Clinical_vs_CopyNumber_Arm00010
202TP-Correlate_Clinical_vs_CopyNumber_Focal00010
203TP-Correlate_Clinical_vs_Methylation00010
204TP-Correlate_Clinical_vs_miR10000
205TP-Correlate_Clinical_vs_miRseq00010
206TP-Correlate_Clinical_vs_Molecular_Subtypes00010
207TP-Correlate_Clinical_vs_mRNA10000
208TP-Correlate_Clinical_vs_mRNAseq00010
209TP-Correlate_Clinical_vs_Mutation00010
210TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
211TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
212TP-Correlate_Clinical_vs_MutationRate00010
213TP-Correlate_Clinical_vs_RPPA00010
214TP-Correlate_CopyNumber_vs_miR10000
215TP-Correlate_CopyNumber_vs_mRNA10000
216TP-Correlate_CopyNumber_vs_mRNAseq00010
217TP-Correlate_Methylation_vs_mRNA00010
218TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
219TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
220TP-Correlate_molecularSubtype_vs_Mutation00010
221TP-Correlate_mRNAseq_vs_Mutation_APOBEC10000
222TP-GenerateStickFigures2.000010
223TP-GenerateStickFigures2CV00010
224TP-GenerateStickFiguresCV00010
225TP-iClusterPlus00010
226TP-LegoPlotter2.000010
227TP-LegoPlotter2CV00010
228TP-LegoPlotterCV00010
229TP-Methylation_Clustering_CNMF00010
230TP-miR_Clustering_CNMF10000
231TP-miR_Clustering_Consensus_Plus10000
232TP-miR_FindDirectTargets10000
233TP-miRseq_Clustering_CNMF00010
234TP-miRseq_Clustering_Consensus_Plus00010
235TP-miRseq_FindDirectTargets00010
236TP-miRseq_Mature_Clustering_CNMF00010
237TP-miRseq_Mature_Clustering_Consensus_Plus00010
238TP-mRNA_Clustering_CNMF10000
239TP-mRNA_Clustering_Consensus_Plus10000
240TP-mRNAseq_Clustering_CNMF00010
241TP-mRNAseq_Clustering_Consensus_Plus00010
242TP-Mutation_APOBEC00010
243TP-Mutation_Assessor00010
244TP-Mutation_CHASM00010
245TP-Mutation_CoOccurrence00010
246TP-Mutation_CoOccurrence_Custom10000
247TP-MutSigNozzleReport2.000010
248TP-MutSigNozzleReport2CV00010
249TP-MutSigNozzleReportCV00010
250TP-MutSigPreprocess2.000010
251TP-MutSigRun2.000010
252TP-MutSigRun2CV00010
253TP-MutSigRunCV00010
254TP-Paradigm_mRNA10000
255TP-Paradigm_mRNA_And_CopyNumber10000
256TP-Paradigm_Prepare_mRNA10000
257TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
258TP-Paradigm_Prepare_RNASeq00010
259TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
260TP-Paradigm_Preprocess_mRNA10000
261TP-ParadigmPreprocess_mRNA10000
262TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
263TP-Paradigm_Preprocess_RNASeq00010
264TP-ParadigmPreprocess_RNASeq00010
265TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
266TP-Paradigm_Report_Preprocess_mRNA10000
267TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
268TP-Paradigm_Report_Preprocess_RNASeq00010
269TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
270TP-Paradigm_RNASeq00010
271TP-Paradigm_RNASeq_And_Copy_Number00010
272TP-Pathway_FindEnrichedGenes10000
273TP-Pathway_GSEA_mRNAseq00010
274TP-Pathway_Hotnet00001
275TP-Pathway_Overlaps_MSigDB_MutSig2CV00010
276TP-Pathway_Paradigm_mRNA10000
277TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
278TP-Pathway_Paradigm_RNASeq00010
279TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
280TP-ProcessCoverageForMutSig2.000010
281TP-RPPA_Clustering_CNMF00010
282TP-RPPA_Clustering_Consensus_Plus00010
283TM-Aggregate_AnalysisFeatures01000
284TM-Aggregate_Gene_Status10000
285TM-Aggregate_Molecular_Subtype_Clusters10000
286TM-Append_CustomClinical10000
287TM-CoMut2.010000
288TM-CoMut2CV10000
289TM-CoMutCV10000
290TM-CopyNumber_Clustering_CNMF10000
291TM-CopyNumber_Clustering_CNMF_thresholded10000
292TM-CopyNumber_Gistic201000
293TM-CopyNumber_Gistic2_Postprocess_Focal10000
294TM-CopyNumberLowPass_Gistic210000
295TM-Correlate_Clinical_vs_CopyNumber_Arm10000
296TM-Correlate_Clinical_vs_CopyNumber_Focal10000
297TM-Correlate_Clinical_vs_Methylation10000
298TM-Correlate_Clinical_vs_miR10000
299TM-Correlate_Clinical_vs_miRseq10000
300TM-Correlate_Clinical_vs_Molecular_Subtypes10000
301TM-Correlate_Clinical_vs_mRNA10000
302TM-Correlate_Clinical_vs_mRNAseq10000
303TM-Correlate_Clinical_vs_Mutation10000
304TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
305TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
306TM-Correlate_Clinical_vs_MutationRate10000
307TM-Correlate_Clinical_vs_RPPA10000
308TM-Correlate_CopyNumber_vs_miR10000
309TM-Correlate_CopyNumber_vs_mRNA10000
310TM-Correlate_CopyNumber_vs_mRNAseq10000
311TM-Correlate_Methylation_vs_mRNA10000
312TM-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
313TM-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
314TM-Correlate_molecularSubtype_vs_Mutation10000
315TM-Correlate_mRNAseq_vs_Mutation_APOBEC10000
316TM-GenerateStickFigures2.010000
317TM-GenerateStickFigures2CV10000
318TM-GenerateStickFiguresCV10000
319TM-iClusterPlus10000
320TM-LegoPlotter2.010000
321TM-LegoPlotter2CV10000
322TM-LegoPlotterCV10000
323TM-Methylation_Clustering_CNMF01000
324TM-miR_Clustering_CNMF10000
325TM-miR_Clustering_Consensus_Plus10000
326TM-miR_FindDirectTargets10000
327TM-miRseq_Clustering_CNMF10000
328TM-miRseq_Clustering_Consensus_Plus10000
329TM-miRseq_FindDirectTargets10000
330TM-miRseq_Mature_Clustering_CNMF10000
331TM-miRseq_Mature_Clustering_Consensus_Plus10000
332TM-mRNA_Clustering_CNMF10000
333TM-mRNA_Clustering_Consensus_Plus10000
334TM-mRNAseq_Clustering_CNMF10000
335TM-mRNAseq_Clustering_Consensus_Plus10000
336TM-Mutation_APOBEC10000
337TM-Mutation_Assessor10000
338TM-Mutation_CHASM10000
339TM-Mutation_CoOccurrence10000
340TM-Mutation_CoOccurrence_Custom10000
341TM-MutSigNozzleReport2.010000
342TM-MutSigNozzleReport2CV10000
343TM-MutSigNozzleReportCV10000
344TM-MutSigPreprocess2.010000
345TM-MutSigRun2.010000
346TM-MutSigRun2CV10000
347TM-MutSigRunCV10000
348TM-Paradigm_mRNA10000
349TM-Paradigm_mRNA_And_CopyNumber10000
350TM-Paradigm_Prepare_mRNA10000
351TM-Paradigm_Prepare_mRNA_And_Copy_Number10000
352TM-Paradigm_Prepare_RNASeq10000
353TM-Paradigm_Prepare_RNASeq_And_Copy_Number10000
354TM-Paradigm_Preprocess_mRNA10000
355TM-ParadigmPreprocess_mRNA10000
356TM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
357TM-ParadigmPreprocess_RNASeq01000
358TM-Paradigm_Preprocess_RNASeq10000
359TM-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
360TM-Paradigm_Report_Preprocess_mRNA10000
361TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
362TM-Paradigm_Report_Preprocess_RNASeq10000
363TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
364TM-Paradigm_RNASeq10000
365TM-Paradigm_RNASeq_And_Copy_Number10000
366TM-Pathway_FindEnrichedGenes10000
367TM-Pathway_GSEA_mRNAseq10000
368TM-Pathway_Hotnet10000
369TM-Pathway_Overlaps_MSigDB_MutSig2CV10000
370TM-Pathway_Paradigm_mRNA10000
371TM-Pathway_Paradigm_mRNA_And_Copy_Number10000
372TM-Pathway_Paradigm_RNASeq10000
373TM-Pathway_Paradigm_RNASeq_And_Copy_Number10000
374TM-ProcessCoverageForMutSig2.010000
375TM-RPPA_Clustering_CNMF10000
376TM-RPPA_Clustering_Consensus_Plus10000
377NT-Aggregate_AnalysisFeatures01000
378NT-Aggregate_Gene_Status10000
379NT-Aggregate_Molecular_Subtype_Clusters10000
380NT-Append_CustomClinical01000
381NT-CoMut2.010000
382NT-CoMut2CV10000
383NT-CoMutCV10000
384NT-CopyNumber_Clustering_CNMF10000
385NT-CopyNumber_Clustering_CNMF_thresholded10000
386NT-CopyNumber_Gistic201000
387NT-CopyNumber_Gistic2_Postprocess_Focal10000
388NT-CopyNumberLowPass_Gistic210000
389NT-Correlate_Clinical_vs_CopyNumber_Arm10000
390NT-Correlate_Clinical_vs_CopyNumber_Focal10000
391NT-Correlate_Clinical_vs_Methylation10000
392NT-Correlate_Clinical_vs_miR10000
393NT-Correlate_Clinical_vs_miRseq10000
394NT-Correlate_Clinical_vs_Molecular_Subtypes10000
395NT-Correlate_Clinical_vs_mRNA10000
396NT-Correlate_Clinical_vs_mRNAseq10000
397NT-Correlate_Clinical_vs_Mutation10000
398NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
399NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
400NT-Correlate_Clinical_vs_MutationRate10000
401NT-Correlate_Clinical_vs_RPPA10000
402NT-Correlate_CopyNumber_vs_miR10000
403NT-Correlate_CopyNumber_vs_mRNA10000
404NT-Correlate_CopyNumber_vs_mRNAseq10000
405NT-Correlate_Methylation_vs_mRNA10000
406NT-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
407NT-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
408NT-Correlate_molecularSubtype_vs_Mutation10000
409NT-Correlate_mRNAseq_vs_Mutation_APOBEC10000
410NT-GenerateStickFigures2.010000
411NT-GenerateStickFigures2CV10000
412NT-GenerateStickFiguresCV10000
413NT-iClusterPlus10000
414NT-LegoPlotter2.010000
415NT-LegoPlotter2CV10000
416NT-LegoPlotterCV10000
417NT-Methylation_Clustering_CNMF01000
418NT-miR_Clustering_CNMF10000
419NT-miR_Clustering_Consensus_Plus10000
420NT-miR_FindDirectTargets10000
421NT-miRseq_Clustering_CNMF10000
422NT-miRseq_Clustering_Consensus_Plus10000
423NT-miRseq_FindDirectTargets10000
424NT-miRseq_Mature_Clustering_CNMF10000
425NT-miRseq_Mature_Clustering_Consensus_Plus10000
426NT-mRNA_Clustering_CNMF10000
427NT-mRNA_Clustering_Consensus_Plus10000
428NT-mRNAseq_Clustering_CNMF10000
429NT-mRNAseq_Clustering_Consensus_Plus10000
430NT-Mutation_APOBEC10000
431NT-Mutation_Assessor10000
432NT-Mutation_CHASM10000
433NT-Mutation_CoOccurrence10000
434NT-Mutation_CoOccurrence_Custom10000
435NT-MutSigNozzleReport2.010000
436NT-MutSigNozzleReport2CV10000
437NT-MutSigNozzleReportCV10000
438NT-MutSigPreprocess2.010000
439NT-MutSigRun2.010000
440NT-MutSigRun2CV10000
441NT-MutSigRunCV10000
442NT-Paradigm_mRNA10000
443NT-Paradigm_mRNA_And_CopyNumber10000
444NT-Paradigm_Prepare_mRNA10000
445NT-Paradigm_Prepare_mRNA_And_Copy_Number10000
446NT-Paradigm_Prepare_RNASeq10000
447NT-Paradigm_Prepare_RNASeq_And_Copy_Number10000
448NT-Paradigm_Preprocess_mRNA10000
449NT-ParadigmPreprocess_mRNA10000
450NT-Paradigm_Preprocess_mRNA_And_Copy_Number10000
451NT-ParadigmPreprocess_RNASeq01000
452NT-Paradigm_Preprocess_RNASeq10000
453NT-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
454NT-Paradigm_Report_Preprocess_mRNA10000
455NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
456NT-Paradigm_Report_Preprocess_RNASeq10000
457NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
458NT-Paradigm_RNASeq10000
459NT-Paradigm_RNASeq_And_Copy_Number10000
460NT-Pathway_FindEnrichedGenes10000
461NT-Pathway_GSEA_mRNAseq10000
462NT-Pathway_Hotnet10000
463NT-Pathway_Overlaps_MSigDB_MutSig2CV10000
464NT-Pathway_Paradigm_mRNA10000
465NT-Pathway_Paradigm_mRNA_And_Copy_Number10000
466NT-Pathway_Paradigm_RNASeq10000
467NT-Pathway_Paradigm_RNASeq_And_Copy_Number10000
468NT-ProcessCoverageForMutSig2.010000
469NT-RPPA_Clustering_CNMF10000
470NT-RPPA_Clustering_Consensus_Plus10000
471NB-Aggregate_AnalysisFeatures01000
472NB-Aggregate_Gene_Status10000
473NB-Aggregate_Molecular_Subtype_Clusters10000
474NB-Append_CustomClinical01000
475NB-CoMut2.010000
476NB-CoMut2CV10000
477NB-CoMutCV10000
478NB-CopyNumber_Clustering_CNMF10000
479NB-CopyNumber_Clustering_CNMF_thresholded10000
480NB-CopyNumber_Gistic201000
481NB-CopyNumber_Gistic2_Postprocess_Focal10000
482NB-CopyNumberLowPass_Gistic210000
483NB-Correlate_Clinical_vs_CopyNumber_Arm10000
484NB-Correlate_Clinical_vs_CopyNumber_Focal10000
485NB-Correlate_Clinical_vs_Methylation10000
486NB-Correlate_Clinical_vs_miR10000
487NB-Correlate_Clinical_vs_miRseq10000
488NB-Correlate_Clinical_vs_Molecular_Subtypes10000
489NB-Correlate_Clinical_vs_mRNA10000
490NB-Correlate_Clinical_vs_mRNAseq10000
491NB-Correlate_Clinical_vs_Mutation10000
492NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
493NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
494NB-Correlate_Clinical_vs_MutationRate10000
495NB-Correlate_Clinical_vs_RPPA10000
496NB-Correlate_CopyNumber_vs_miR10000
497NB-Correlate_CopyNumber_vs_mRNA10000
498NB-Correlate_CopyNumber_vs_mRNAseq10000
499NB-Correlate_Methylation_vs_mRNA10000
500NB-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
501NB-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
502NB-Correlate_molecularSubtype_vs_Mutation10000
503NB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
504NB-GenerateStickFigures2.010000
505NB-GenerateStickFigures2CV10000
506NB-GenerateStickFiguresCV10000
507NB-iClusterPlus10000
508NB-LegoPlotter2.010000
509NB-LegoPlotter2CV10000
510NB-LegoPlotterCV10000
511NB-Methylation_Clustering_CNMF10000
512NB-miR_Clustering_CNMF10000
513NB-miR_Clustering_Consensus_Plus10000
514NB-miR_FindDirectTargets10000
515NB-miRseq_Clustering_CNMF10000
516NB-miRseq_Clustering_Consensus_Plus10000
517NB-miRseq_FindDirectTargets10000
518NB-miRseq_Mature_Clustering_CNMF10000
519NB-miRseq_Mature_Clustering_Consensus_Plus10000
520NB-mRNA_Clustering_CNMF10000
521NB-mRNA_Clustering_Consensus_Plus10000
522NB-mRNAseq_Clustering_CNMF10000
523NB-mRNAseq_Clustering_Consensus_Plus10000
524NB-Mutation_APOBEC10000
525NB-Mutation_Assessor10000
526NB-Mutation_CHASM10000
527NB-Mutation_CoOccurrence10000
528NB-Mutation_CoOccurrence_Custom10000
529NB-MutSigNozzleReport2.010000
530NB-MutSigNozzleReport2CV10000
531NB-MutSigNozzleReportCV10000
532NB-MutSigPreprocess2.010000
533NB-MutSigRun2.010000
534NB-MutSigRun2CV10000
535NB-MutSigRunCV10000
536NB-Paradigm_mRNA10000
537NB-Paradigm_mRNA_And_CopyNumber10000
538NB-Paradigm_Prepare_mRNA10000
539NB-Paradigm_Prepare_mRNA_And_Copy_Number10000
540NB-Paradigm_Prepare_RNASeq10000
541NB-Paradigm_Prepare_RNASeq_And_Copy_Number10000
542NB-Paradigm_Preprocess_mRNA10000
543NB-ParadigmPreprocess_mRNA10000
544NB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
545NB-Paradigm_Preprocess_RNASeq10000
546NB-ParadigmPreprocess_RNASeq10000
547NB-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
548NB-Paradigm_Report_Preprocess_mRNA10000
549NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
550NB-Paradigm_Report_Preprocess_RNASeq10000
551NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
552NB-Paradigm_RNASeq10000
553NB-Paradigm_RNASeq_And_Copy_Number10000
554NB-Pathway_FindEnrichedGenes10000
555NB-Pathway_GSEA_mRNAseq10000
556NB-Pathway_Hotnet10000
557NB-Pathway_Overlaps_MSigDB_MutSig2CV10000
558NB-Pathway_Paradigm_mRNA10000
559NB-Pathway_Paradigm_mRNA_And_Copy_Number10000
560NB-Pathway_Paradigm_RNASeq10000
561NB-Pathway_Paradigm_RNASeq_And_Copy_Number10000
562NB-ProcessCoverageForMutSig2.010000
563NB-RPPA_Clustering_CNMF10000
564NB-RPPA_Clustering_Consensus_Plus10000
565FFPE-Aggregate_AnalysisFeatures01000
566FFPE-Aggregate_Gene_Status10000
567FFPE-Aggregate_Molecular_Subtype_Clusters10000
568FFPE-Append_CustomClinical10000
569FFPE-CoMut2.010000
570FFPE-CoMut2CV10000
571FFPE-CoMutCV10000
572FFPE-CopyNumber_Clustering_CNMF10000
573FFPE-CopyNumber_Clustering_CNMF_thresholded10000
574FFPE-CopyNumber_Gistic201000
575FFPE-CopyNumber_Gistic2_Postprocess_Focal10000
576FFPE-CopyNumberLowPass_Gistic210000
577FFPE-Correlate_Clinical_vs_CopyNumber_Arm10000
578FFPE-Correlate_Clinical_vs_CopyNumber_Focal10000
579FFPE-Correlate_Clinical_vs_Methylation10000
580FFPE-Correlate_Clinical_vs_miR10000
581FFPE-Correlate_Clinical_vs_miRseq10000
582FFPE-Correlate_Clinical_vs_Molecular_Subtypes10000
583FFPE-Correlate_Clinical_vs_mRNA10000
584FFPE-Correlate_Clinical_vs_mRNAseq10000
585FFPE-Correlate_Clinical_vs_Mutation10000
586FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
587FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
588FFPE-Correlate_Clinical_vs_MutationRate10000
589FFPE-Correlate_Clinical_vs_RPPA10000
590FFPE-Correlate_CopyNumber_vs_miR10000
591FFPE-Correlate_CopyNumber_vs_mRNA10000
592FFPE-Correlate_CopyNumber_vs_mRNAseq10000
593FFPE-Correlate_Methylation_vs_mRNA10000
594FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm10000
595FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal10000
596FFPE-Correlate_molecularSubtype_vs_Mutation10000
597FFPE-Correlate_mRNAseq_vs_Mutation_APOBEC10000
598FFPE-GenerateStickFigures2.010000
599FFPE-GenerateStickFigures2CV10000
600FFPE-GenerateStickFiguresCV10000
601FFPE-LegoPlotter2.010000
602FFPE-LegoPlotter2CV10000
603FFPE-LegoPlotterCV10000
604FFPE-Methylation_Clustering_CNMF01000
605FFPE-miR_Clustering_CNMF10000
606FFPE-miR_Clustering_Consensus_Plus10000
607FFPE-miR_FindDirectTargets10000
608FFPE-miRseq_Clustering_CNMF10000
609FFPE-miRseq_Clustering_Consensus_Plus10000
610FFPE-miRseq_FindDirectTargets10000
611FFPE-miRseq_Mature_Clustering_CNMF10000
612FFPE-miRseq_Mature_Clustering_Consensus_Plus10000
613FFPE-mRNA_Clustering_CNMF10000
614FFPE-mRNA_Clustering_Consensus_Plus10000
615FFPE-mRNAseq_Clustering_CNMF10000
616FFPE-mRNAseq_Clustering_Consensus_Plus10000
617FFPE-Mutation_APOBEC10000
618FFPE-Mutation_Assessor10000
619FFPE-Mutation_CHASM10000
620FFPE-Mutation_CoOccurrence10000
621FFPE-Mutation_CoOccurrence_Custom10000
622FFPE-MutSigNozzleReport2.010000
623FFPE-MutSigNozzleReport2CV10000
624FFPE-MutSigNozzleReportCV10000
625FFPE-MutSigPreprocess2.010000
626FFPE-MutSigRun2.010000
627FFPE-MutSigRun2CV10000
628FFPE-MutSigRunCV10000
629FFPE-Paradigm_mRNA10000
630FFPE-Paradigm_mRNA_And_CopyNumber10000
631FFPE-Paradigm_Prepare_mRNA10000
632FFPE-Paradigm_Prepare_mRNA_And_Copy_Number10000
633FFPE-Paradigm_Prepare_RNASeq10000
634FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number10000
635FFPE-Paradigm_Preprocess_mRNA10000
636FFPE-ParadigmPreprocess_mRNA10000
637FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number10000
638FFPE-ParadigmPreprocess_RNASeq01000
639FFPE-Paradigm_Preprocess_RNASeq10000
640FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
641FFPE-Paradigm_Report_Preprocess_mRNA10000
642FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
643FFPE-Paradigm_Report_Preprocess_RNASeq10000
644FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
645FFPE-Paradigm_RNASeq10000
646FFPE-Paradigm_RNASeq_And_Copy_Number10000
647FFPE-Pathway_FindEnrichedGenes10000
648FFPE-Pathway_GSEA_mRNAseq10000
649FFPE-Pathway_Hotnet10000
650FFPE-Pathway_Overlaps_MSigDB_MutSig2CV10000
651FFPE-Pathway_Paradigm_mRNA10000
652FFPE-Pathway_Paradigm_mRNA_And_Copy_Number10000
653FFPE-Pathway_Paradigm_RNASeq10000
654FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number10000
655FFPE-ProcessCoverageForMutSig2.010000
656FFPE-RPPA_Clustering_CNMF10000
657FFPE-RPPA_Clustering_Consensus_Plus10000
Total553360671

This table generated on Fri Jun 10 09:06:29 2016