Broad GDAC Analyses Status
integration Run for Tumor Type: UVM
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
UVM
80
80
80
51
80
0
80
0
80
12
80
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Aggregate_AnalysisFeatures
0
1
0
0
0
2
Aggregate_Gene_Status
1
0
0
0
0
3
Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
4
Append_CustomClinical
0
1
0
0
0
5
CoMut2.0
1
0
0
0
0
6
CoMut2CV
1
0
0
0
0
7
CoMutCV
1
0
0
0
0
8
CopyNumber_Clustering_CNMF
1
0
0
0
0
9
CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
10
CopyNumber_Gistic2
0
1
0
0
0
11
CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
12
CopyNumberLowPass_Gistic2
0
1
0
0
0
13
Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
14
Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
15
Correlate_Clinical_vs_Methylation
1
0
0
0
0
16
Correlate_Clinical_vs_miR
1
0
0
0
0
17
Correlate_Clinical_vs_miRseq
1
0
0
0
0
18
Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
19
Correlate_Clinical_vs_mRNA
1
0
0
0
0
20
Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
21
Correlate_Clinical_vs_Mutation
1
0
0
0
0
22
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
23
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
24
Correlate_Clinical_vs_MutationRate
1
0
0
0
0
25
Correlate_Clinical_vs_RPPA
1
0
0
0
0
26
Correlate_CopyNumber_vs_miR
1
0
0
0
0
27
Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
28
Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
29
Correlate_Methylation_vs_mRNA
0
1
0
0
0
30
Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
31
Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
32
Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
33
Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
34
GenerateStickFigures2.0
1
0
0
0
0
35
GenerateStickFigures2CV
1
0
0
0
0
36
GenerateStickFiguresCV
1
0
0
0
0
37
iClusterPlus
1
0
0
0
0
38
LegoPlotter2.0
1
0
0
0
0
39
LegoPlotter2CV
1
0
0
0
0
40
LegoPlotterCV
1
0
0
0
0
41
Methylation_Clustering_CNMF
0
1
0
0
0
42
miR_Clustering_CNMF
1
0
0
0
0
43
miR_Clustering_Consensus_Plus
1
0
0
0
0
44
miR_FindDirectTargets
1
0
0
0
0
45
miRseq_Clustering_CNMF
0
1
0
0
0
46
miRseq_Clustering_Consensus_Plus
0
1
0
0
0
47
miRseq_FindDirectTargets
0
1
0
0
0
48
miRseq_Mature_Clustering_CNMF
0
1
0
0
0
49
miRseq_Mature_Clustering_Consensus_Plus
0
1
0
0
0
50
mRNA_Clustering_CNMF
1
0
0
0
0
51
mRNA_Clustering_Consensus_Plus
1
0
0
0
0
52
mRNAseq_Clustering_CNMF
0
1
0
0
0
53
mRNAseq_Clustering_Consensus_Plus
0
1
0
0
0
54
Mutation_APOBEC
1
0
0
0
0
55
Mutation_Assessor
1
0
0
0
0
56
Mutation_CHASM
1
0
0
0
0
57
Mutation_CoOccurrence
1
0
0
0
0
58
Mutation_CoOccurrence_Custom
1
0
0
0
0
59
MutSigNozzleReport2.0
1
0
0
0
0
60
MutSigNozzleReport2CV
1
0
0
0
0
61
MutSigNozzleReportCV
1
0
0
0
0
62
MutSigPreprocess2.0
1
0
0
0
0
63
MutSigRun2.0
1
0
0
0
0
64
MutSigRun2CV
1
0
0
0
0
65
MutSigRunCV
1
0
0
0
0
66
Paradigm_mRNA
1
0
0
0
0
67
Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
68
Paradigm_Prepare_mRNA
1
0
0
0
0
69
Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
70
Paradigm_Prepare_RNASeq
1
0
0
0
0
71
Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
72
Paradigm_Preprocess_mRNA
1
0
0
0
0
73
ParadigmPreprocess_mRNA
1
0
0
0
0
74
Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
75
ParadigmPreprocess_RNASeq
0
1
0
0
0
76
Paradigm_Preprocess_RNASeq
1
0
0
0
0
77
Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
78
Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
79
Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
80
Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
81
Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
82
Paradigm_RNASeq
1
0
0
0
0
83
Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
84
Pathway_FindEnrichedGenes
1
0
0
0
0
85
Pathway_GSEA_mRNAseq
1
0
0
0
0
86
Pathway_Hotnet
1
0
0
0
0
87
Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
88
Pathway_Paradigm_mRNA
1
0
0
0
0
89
Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
90
Pathway_Paradigm_RNASeq
1
0
0
0
0
91
Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
92
ProcessCoverageForMutSig2.0
1
0
0
0
0
93
RPPA_Clustering_CNMF
1
0
0
0
0
94
RPPA_Clustering_Consensus_Plus
1
0
0
0
0
95
TP-Aggregate_AnalysisFeatures
0
0
0
1
0
96
TP-Aggregate_Gene_Status
0
0
0
1
0
97
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
98
TP-Append_CustomClinical
0
0
0
1
0
99
TP-CoMut2.0
0
0
0
1
0
100
TP-CoMut2CV
0
0
0
1
0
101
TP-CoMutCV
0
0
0
1
0
102
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
103
TP-CopyNumber_Clustering_CNMF_thresholded
0
0
0
1
0
104
TP-CopyNumber_Gistic2
0
0
0
1
0
105
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
106
TP-CopyNumberLowPass_Gistic2
0
0
0
0
1
107
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
108
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
109
TP-Correlate_Clinical_vs_Methylation
0
0
0
1
0
110
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
111
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
112
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
113
TP-Correlate_Clinical_vs_mRNA
1
0
0
0
0
114
TP-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
115
TP-Correlate_Clinical_vs_Mutation
0
0
0
1
0
116
TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
117
TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
118
TP-Correlate_Clinical_vs_MutationRate
0
0
0
1
0
119
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
120
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
121
TP-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
122
TP-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
123
TP-Correlate_Methylation_vs_mRNA
0
0
0
1
0
124
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
125
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
126
TP-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
127
TP-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
128
TP-GenerateStickFigures2.0
0
0
0
1
0
129
TP-GenerateStickFigures2CV
0
0
0
1
0
130
TP-GenerateStickFiguresCV
0
0
0
1
0
131
TP-iClusterPlus
0
0
0
1
0
132
TP-LegoPlotter2.0
0
0
0
1
0
133
TP-LegoPlotter2CV
0
0
0
1
0
134
TP-LegoPlotterCV
0
0
0
1
0
135
TP-Methylation_Clustering_CNMF
0
0
0
1
0
136
TP-miR_Clustering_CNMF
1
0
0
0
0
137
TP-miR_Clustering_Consensus_Plus
1
0
0
0
0
138
TP-miR_FindDirectTargets
1
0
0
0
0
139
TP-miRseq_Clustering_CNMF
0
0
0
1
0
140
TP-miRseq_Clustering_Consensus_Plus
0
0
0
1
0
141
TP-miRseq_FindDirectTargets
0
0
0
1
0
142
TP-miRseq_Mature_Clustering_CNMF
0
0
0
1
0
143
TP-miRseq_Mature_Clustering_Consensus_Plus
0
0
0
1
0
144
TP-mRNA_Clustering_CNMF
1
0
0
0
0
145
TP-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
146
TP-mRNAseq_Clustering_CNMF
0
0
0
1
0
147
TP-mRNAseq_Clustering_Consensus_Plus
0
0
0
1
0
148
TP-Mutation_APOBEC
0
0
0
1
0
149
TP-Mutation_Assessor
0
0
0
1
0
150
TP-Mutation_CHASM
0
0
0
1
0
151
TP-Mutation_CoOccurrence
0
0
0
1
0
152
TP-Mutation_CoOccurrence_Custom
1
0
0
0
0
153
TP-MutSigNozzleReport2.0
0
0
0
1
0
154
TP-MutSigNozzleReport2CV
0
0
0
1
0
155
TP-MutSigNozzleReportCV
0
0
0
1
0
156
TP-MutSigPreprocess2.0
0
0
0
1
0
157
TP-MutSigRun2.0
0
0
0
1
0
158
TP-MutSigRun2CV
0
0
0
1
0
159
TP-MutSigRunCV
0
0
0
1
0
160
TP-Paradigm_mRNA
1
0
0
0
0
161
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
162
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
163
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
164
TP-Paradigm_Prepare_RNASeq
0
0
0
1
0
165
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
166
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
167
TP-ParadigmPreprocess_mRNA
1
0
0
0
0
168
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
169
TP-Paradigm_Preprocess_RNASeq
0
0
0
1
0
170
TP-ParadigmPreprocess_RNASeq
0
0
0
1
0
171
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
172
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
173
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
174
TP-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
175
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
176
TP-Paradigm_RNASeq
0
0
0
1
0
177
TP-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
178
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
179
TP-Pathway_GSEA_mRNAseq
0
0
0
1
0
180
TP-Pathway_Hotnet
0
0
0
0
1
181
TP-Pathway_Overlaps_MSigDB_MutSig2CV
0
0
0
1
0
182
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
183
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
184
TP-Pathway_Paradigm_RNASeq
0
0
0
1
0
185
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
186
TP-ProcessCoverageForMutSig2.0
0
0
0
1
0
187
TP-RPPA_Clustering_CNMF
1
0
0
0
0
188
TP-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
189
NB-Aggregate_AnalysisFeatures
0
1
0
0
0
190
NB-Aggregate_Gene_Status
1
0
0
0
0
191
NB-Aggregate_Molecular_Subtype_Clusters
1
0
0
0
0
192
NB-Append_CustomClinical
0
1
0
0
0
193
NB-CoMut2.0
1
0
0
0
0
194
NB-CoMut2CV
1
0
0
0
0
195
NB-CoMutCV
1
0
0
0
0
196
NB-CopyNumber_Clustering_CNMF
1
0
0
0
0
197
NB-CopyNumber_Clustering_CNMF_thresholded
1
0
0
0
0
198
NB-CopyNumber_Gistic2
0
1
0
0
0
199
NB-CopyNumber_Gistic2_Postprocess_Focal
1
0
0
0
0
200
NB-CopyNumberLowPass_Gistic2
0
1
0
0
0
201
NB-Correlate_Clinical_vs_CopyNumber_Arm
1
0
0
0
0
202
NB-Correlate_Clinical_vs_CopyNumber_Focal
1
0
0
0
0
203
NB-Correlate_Clinical_vs_Methylation
1
0
0
0
0
204
NB-Correlate_Clinical_vs_miR
1
0
0
0
0
205
NB-Correlate_Clinical_vs_miRseq
1
0
0
0
0
206
NB-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
207
NB-Correlate_Clinical_vs_mRNA
1
0
0
0
0
208
NB-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
209
NB-Correlate_Clinical_vs_Mutation
1
0
0
0
0
210
NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical
1
0
0
0
0
211
NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous
1
0
0
0
0
212
NB-Correlate_Clinical_vs_MutationRate
1
0
0
0
0
213
NB-Correlate_Clinical_vs_RPPA
1
0
0
0
0
214
NB-Correlate_CopyNumber_vs_miR
1
0
0
0
0
215
NB-Correlate_CopyNumber_vs_mRNA
1
0
0
0
0
216
NB-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
217
NB-Correlate_Methylation_vs_mRNA
1
0
0
0
0
218
NB-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
219
NB-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
220
NB-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
221
NB-Correlate_mRNAseq_vs_Mutation_APOBEC
1
0
0
0
0
222
NB-GenerateStickFigures2.0
1
0
0
0
0
223
NB-GenerateStickFigures2CV
1
0
0
0
0
224
NB-GenerateStickFiguresCV
1
0
0
0
0
225
NB-iClusterPlus
1
0
0
0
0
226
NB-LegoPlotter2.0
1
0
0
0
0
227
NB-LegoPlotter2CV
1
0
0
0
0
228
NB-LegoPlotterCV
1
0
0
0
0
229
NB-Methylation_Clustering_CNMF
1
0
0
0
0
230
NB-miR_Clustering_CNMF
1
0
0
0
0
231
NB-miR_Clustering_Consensus_Plus
1
0
0
0
0
232
NB-miR_FindDirectTargets
1
0
0
0
0
233
NB-miRseq_Clustering_CNMF
1
0
0
0
0
234
NB-miRseq_Clustering_Consensus_Plus
1
0
0
0
0
235
NB-miRseq_FindDirectTargets
1
0
0
0
0
236
NB-miRseq_Mature_Clustering_CNMF
1
0
0
0
0
237
NB-miRseq_Mature_Clustering_Consensus_Plus
1
0
0
0
0
238
NB-mRNA_Clustering_CNMF
1
0
0
0
0
239
NB-mRNA_Clustering_Consensus_Plus
1
0
0
0
0
240
NB-mRNAseq_Clustering_CNMF
1
0
0
0
0
241
NB-mRNAseq_Clustering_Consensus_Plus
1
0
0
0
0
242
NB-Mutation_APOBEC
1
0
0
0
0
243
NB-Mutation_Assessor
1
0
0
0
0
244
NB-Mutation_CHASM
1
0
0
0
0
245
NB-Mutation_CoOccurrence
1
0
0
0
0
246
NB-Mutation_CoOccurrence_Custom
1
0
0
0
0
247
NB-MutSigNozzleReport2.0
1
0
0
0
0
248
NB-MutSigNozzleReport2CV
1
0
0
0
0
249
NB-MutSigNozzleReportCV
1
0
0
0
0
250
NB-MutSigPreprocess2.0
1
0
0
0
0
251
NB-MutSigRun2.0
1
0
0
0
0
252
NB-MutSigRun2CV
1
0
0
0
0
253
NB-MutSigRunCV
1
0
0
0
0
254
NB-Paradigm_mRNA
1
0
0
0
0
255
NB-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
256
NB-Paradigm_Prepare_mRNA
1
0
0
0
0
257
NB-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
258
NB-Paradigm_Prepare_RNASeq
1
0
0
0
0
259
NB-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
260
NB-Paradigm_Preprocess_mRNA
1
0
0
0
0
261
NB-ParadigmPreprocess_mRNA
1
0
0
0
0
262
NB-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
263
NB-Paradigm_Preprocess_RNASeq
1
0
0
0
0
264
NB-ParadigmPreprocess_RNASeq
1
0
0
0
0
265
NB-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
266
NB-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
267
NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
268
NB-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
269
NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
270
NB-Paradigm_RNASeq
1
0
0
0
0
271
NB-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
272
NB-Pathway_FindEnrichedGenes
1
0
0
0
0
273
NB-Pathway_GSEA_mRNAseq
1
0
0
0
0
274
NB-Pathway_Hotnet
1
0
0
0
0
275
NB-Pathway_Overlaps_MSigDB_MutSig2CV
1
0
0
0
0
276
NB-Pathway_Paradigm_mRNA
1
0
0
0
0
277
NB-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
278
NB-Pathway_Paradigm_RNASeq
1
0
0
0
0
279
NB-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
280
NB-ProcessCoverageForMutSig2.0
1
0
0
0
0
281
NB-RPPA_Clustering_CNMF
1
0
0
0
0
282
NB-RPPA_Clustering_Consensus_Plus
1
0
0
0
0
Total
198
18
0
64
2
This table generated on Fri Jun 10 09:06:41 2016