Broad GDAC integration Run Status : UVM

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
UVM	80	80	80	51	80	0	80	0	80	12	80	0

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_AnalysisFeatures	0	1	0	0
2	Aggregate_Gene_Status	1	0	0	0
3	Aggregate_Molecular_Subtype_Clusters	1	0	0	0
4	Append_CustomClinical	0	1	0	0
5	CoMut2.0	1	0	0	0
6	CoMut2CV	1	0	0	0
7	CoMutCV	1	0	0	0
8	CopyNumber_Clustering_CNMF	1	0	0	0
9	CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
10	CopyNumber_Gistic2	0	1	0	0
11	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
12	CopyNumberLowPass_Gistic2	0	1	0	0
13	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
14	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
15	Correlate_Clinical_vs_Methylation	1	0	0	0
16	Correlate_Clinical_vs_miR	1	0	0	0
17	Correlate_Clinical_vs_miRseq	1	0	0	0
18	Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
19	Correlate_Clinical_vs_mRNA	1	0	0	0
20	Correlate_Clinical_vs_mRNAseq	1	0	0	0
21	Correlate_Clinical_vs_Mutation	1	0	0	0
22	Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
23	Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
24	Correlate_Clinical_vs_MutationRate	1	0	0	0
25	Correlate_Clinical_vs_RPPA	1	0	0	0
26	Correlate_CopyNumber_vs_miR	1	0	0	0
27	Correlate_CopyNumber_vs_mRNA	1	0	0	0
28	Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
29	Correlate_Methylation_vs_mRNA	0	1	0	0
30	Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
31	Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
32	Correlate_molecularSubtype_vs_Mutation	1	0	0	0
33	Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
34	GenerateStickFigures2.0	1	0	0	0
35	GenerateStickFigures2CV	1	0	0	0
36	GenerateStickFiguresCV	1	0	0	0
37	iClusterPlus	1	0	0	0
38	LegoPlotter2.0	1	0	0	0
39	LegoPlotter2CV	1	0	0	0
40	LegoPlotterCV	1	0	0	0
41	Methylation_Clustering_CNMF	0	1	0	0
42	miR_Clustering_CNMF	1	0	0	0
43	miR_Clustering_Consensus_Plus	1	0	0	0
44	miR_FindDirectTargets	1	0	0	0
45	miRseq_Clustering_CNMF	0	1	0	0
46	miRseq_Clustering_Consensus_Plus	0	1	0	0
47	miRseq_FindDirectTargets	0	1	0	0
48	miRseq_Mature_Clustering_CNMF	0	1	0	0
49	miRseq_Mature_Clustering_Consensus_Plus	0	1	0	0
50	mRNA_Clustering_CNMF	1	0	0	0
51	mRNA_Clustering_Consensus_Plus	1	0	0	0
52	mRNAseq_Clustering_CNMF	0	1	0	0
53	mRNAseq_Clustering_Consensus_Plus	0	1	0	0
54	Mutation_APOBEC	1	0	0	0
55	Mutation_Assessor	1	0	0	0
56	Mutation_CHASM	1	0	0	0
57	Mutation_CoOccurrence	1	0	0	0
58	Mutation_CoOccurrence_Custom	1	0	0	0
59	MutSigNozzleReport2.0	1	0	0	0
60	MutSigNozzleReport2CV	1	0	0	0
61	MutSigNozzleReportCV	1	0	0	0
62	MutSigPreprocess2.0	1	0	0	0
63	MutSigRun2.0	1	0	0	0
64	MutSigRun2CV	1	0	0	0
65	MutSigRunCV	1	0	0	0
66	Paradigm_mRNA	1	0	0	0
67	Paradigm_mRNA_And_CopyNumber	1	0	0	0
68	Paradigm_Prepare_mRNA	1	0	0	0
69	Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
70	Paradigm_Prepare_RNASeq	1	0	0	0
71	Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
72	Paradigm_Preprocess_mRNA	1	0	0	0
73	ParadigmPreprocess_mRNA	1	0	0	0
74	Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
75	ParadigmPreprocess_RNASeq	0	1	0	0
76	Paradigm_Preprocess_RNASeq	1	0	0	0
77	Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
78	Paradigm_Report_Preprocess_mRNA	1	0	0	0
79	Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
80	Paradigm_Report_Preprocess_RNASeq	1	0	0	0
81	Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
82	Paradigm_RNASeq	1	0	0	0
83	Paradigm_RNASeq_And_Copy_Number	1	0	0	0
84	Pathway_FindEnrichedGenes	1	0	0	0
85	Pathway_GSEA_mRNAseq	1	0	0	0
86	Pathway_Hotnet	1	0	0	0
87	Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
88	Pathway_Paradigm_mRNA	1	0	0	0
89	Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
90	Pathway_Paradigm_RNASeq	1	0	0	0
91	Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
92	ProcessCoverageForMutSig2.0	1	0	0	0
93	RPPA_Clustering_CNMF	1	0	0	0
94	RPPA_Clustering_Consensus_Plus	1	0	0	0
95	TP-Aggregate_AnalysisFeatures	0	0	1	0
96	TP-Aggregate_Gene_Status	0	0	1	0
97	TP-Aggregate_Molecular_Subtype_Clusters	0	0	1	0
98	TP-Append_CustomClinical	0	0	1	0
99	TP-CoMut2.0	0	0	1	0
100	TP-CoMut2CV	0	0	1	0
101	TP-CoMutCV	0	0	1	0
102	TP-CopyNumber_Clustering_CNMF	0	0	1	0
103	TP-CopyNumber_Clustering_CNMF_thresholded	0	0	1	0
104	TP-CopyNumber_Gistic2	0	0	1	0
105	TP-CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
106	TP-CopyNumberLowPass_Gistic2	0	0	0	1
107	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
108	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
109	TP-Correlate_Clinical_vs_Methylation	0	0	1	0
110	TP-Correlate_Clinical_vs_miR	1	0	0	0
111	TP-Correlate_Clinical_vs_miRseq	0	0	1	0
112	TP-Correlate_Clinical_vs_Molecular_Subtypes	0	0	1	0
113	TP-Correlate_Clinical_vs_mRNA	1	0	0	0
114	TP-Correlate_Clinical_vs_mRNAseq	0	0	1	0
115	TP-Correlate_Clinical_vs_Mutation	0	0	1	0
116	TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
117	TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
118	TP-Correlate_Clinical_vs_MutationRate	0	0	1	0
119	TP-Correlate_Clinical_vs_RPPA	1	0	0	0
120	TP-Correlate_CopyNumber_vs_miR	1	0	0	0
121	TP-Correlate_CopyNumber_vs_mRNA	1	0	0	0
122	TP-Correlate_CopyNumber_vs_mRNAseq	0	0	1	0
123	TP-Correlate_Methylation_vs_mRNA	0	0	1	0
124	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1	0
125	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1	0
126	TP-Correlate_molecularSubtype_vs_Mutation	0	0	1	0
127	TP-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
128	TP-GenerateStickFigures2.0	0	0	1	0
129	TP-GenerateStickFigures2CV	0	0	1	0
130	TP-GenerateStickFiguresCV	0	0	1	0
131	TP-iClusterPlus	0	0	1	0
132	TP-LegoPlotter2.0	0	0	1	0
133	TP-LegoPlotter2CV	0	0	1	0
134	TP-LegoPlotterCV	0	0	1	0
135	TP-Methylation_Clustering_CNMF	0	0	1	0
136	TP-miR_Clustering_CNMF	1	0	0	0
137	TP-miR_Clustering_Consensus_Plus	1	0	0	0
138	TP-miR_FindDirectTargets	1	0	0	0
139	TP-miRseq_Clustering_CNMF	0	0	1	0
140	TP-miRseq_Clustering_Consensus_Plus	0	0	1	0
141	TP-miRseq_FindDirectTargets	0	0	1	0
142	TP-miRseq_Mature_Clustering_CNMF	0	0	1	0
143	TP-miRseq_Mature_Clustering_Consensus_Plus	0	0	1	0
144	TP-mRNA_Clustering_CNMF	1	0	0	0
145	TP-mRNA_Clustering_Consensus_Plus	1	0	0	0
146	TP-mRNAseq_Clustering_CNMF	0	0	1	0
147	TP-mRNAseq_Clustering_Consensus_Plus	0	0	1	0
148	TP-Mutation_APOBEC	0	0	1	0
149	TP-Mutation_Assessor	0	0	1	0
150	TP-Mutation_CHASM	0	0	1	0
151	TP-Mutation_CoOccurrence	0	0	1	0
152	TP-Mutation_CoOccurrence_Custom	1	0	0	0
153	TP-MutSigNozzleReport2.0	0	0	1	0
154	TP-MutSigNozzleReport2CV	0	0	1	0
155	TP-MutSigNozzleReportCV	0	0	1	0
156	TP-MutSigPreprocess2.0	0	0	1	0
157	TP-MutSigRun2.0	0	0	1	0
158	TP-MutSigRun2CV	0	0	1	0
159	TP-MutSigRunCV	0	0	1	0
160	TP-Paradigm_mRNA	1	0	0	0
161	TP-Paradigm_mRNA_And_CopyNumber	1	0	0	0
162	TP-Paradigm_Prepare_mRNA	1	0	0	0
163	TP-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
164	TP-Paradigm_Prepare_RNASeq	0	0	1	0
165	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	0	0	1	0
166	TP-Paradigm_Preprocess_mRNA	1	0	0	0
167	TP-ParadigmPreprocess_mRNA	1	0	0	0
168	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
169	TP-Paradigm_Preprocess_RNASeq	0	0	1	0
170	TP-ParadigmPreprocess_RNASeq	0	0	1	0
171	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	0	1	0
172	TP-Paradigm_Report_Preprocess_mRNA	1	0	0	0
173	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
174	TP-Paradigm_Report_Preprocess_RNASeq	0	0	1	0
175	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	0	1	0
176	TP-Paradigm_RNASeq	0	0	1	0
177	TP-Paradigm_RNASeq_And_Copy_Number	0	0	1	0
178	TP-Pathway_FindEnrichedGenes	1	0	0	0
179	TP-Pathway_GSEA_mRNAseq	0	0	1	0
180	TP-Pathway_Hotnet	0	0	0	1
181	TP-Pathway_Overlaps_MSigDB_MutSig2CV	0	0	1	0
182	TP-Pathway_Paradigm_mRNA	1	0	0	0
183	TP-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
184	TP-Pathway_Paradigm_RNASeq	0	0	1	0
185	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	0	0	1	0
186	TP-ProcessCoverageForMutSig2.0	0	0	1	0
187	TP-RPPA_Clustering_CNMF	1	0	0	0
188	TP-RPPA_Clustering_Consensus_Plus	1	0	0	0
189	NB-Aggregate_AnalysisFeatures	0	1	0	0
190	NB-Aggregate_Gene_Status	1	0	0	0
191	NB-Aggregate_Molecular_Subtype_Clusters	1	0	0	0
192	NB-Append_CustomClinical	0	1	0	0
193	NB-CoMut2.0	1	0	0	0
194	NB-CoMut2CV	1	0	0	0
195	NB-CoMutCV	1	0	0	0
196	NB-CopyNumber_Clustering_CNMF	1	0	0	0
197	NB-CopyNumber_Clustering_CNMF_thresholded	1	0	0	0
198	NB-CopyNumber_Gistic2	0	1	0	0
199	NB-CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0
200	NB-CopyNumberLowPass_Gistic2	0	1	0	0
201	NB-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0
202	NB-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0
203	NB-Correlate_Clinical_vs_Methylation	1	0	0	0
204	NB-Correlate_Clinical_vs_miR	1	0	0	0
205	NB-Correlate_Clinical_vs_miRseq	1	0	0	0
206	NB-Correlate_Clinical_vs_Molecular_Subtypes	1	0	0	0
207	NB-Correlate_Clinical_vs_mRNA	1	0	0	0
208	NB-Correlate_Clinical_vs_mRNAseq	1	0	0	0
209	NB-Correlate_Clinical_vs_Mutation	1	0	0	0
210	NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	1	0	0	0
211	NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	1	0	0	0
212	NB-Correlate_Clinical_vs_MutationRate	1	0	0	0
213	NB-Correlate_Clinical_vs_RPPA	1	0	0	0
214	NB-Correlate_CopyNumber_vs_miR	1	0	0	0
215	NB-Correlate_CopyNumber_vs_mRNA	1	0	0	0
216	NB-Correlate_CopyNumber_vs_mRNAseq	1	0	0	0
217	NB-Correlate_Methylation_vs_mRNA	1	0	0	0
218	NB-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0
219	NB-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0
220	NB-Correlate_molecularSubtype_vs_Mutation	1	0	0	0
221	NB-Correlate_mRNAseq_vs_Mutation_APOBEC	1	0	0	0
222	NB-GenerateStickFigures2.0	1	0	0	0
223	NB-GenerateStickFigures2CV	1	0	0	0
224	NB-GenerateStickFiguresCV	1	0	0	0
225	NB-iClusterPlus	1	0	0	0
226	NB-LegoPlotter2.0	1	0	0	0
227	NB-LegoPlotter2CV	1	0	0	0
228	NB-LegoPlotterCV	1	0	0	0
229	NB-Methylation_Clustering_CNMF	1	0	0	0
230	NB-miR_Clustering_CNMF	1	0	0	0
231	NB-miR_Clustering_Consensus_Plus	1	0	0	0
232	NB-miR_FindDirectTargets	1	0	0	0
233	NB-miRseq_Clustering_CNMF	1	0	0	0
234	NB-miRseq_Clustering_Consensus_Plus	1	0	0	0
235	NB-miRseq_FindDirectTargets	1	0	0	0
236	NB-miRseq_Mature_Clustering_CNMF	1	0	0	0
237	NB-miRseq_Mature_Clustering_Consensus_Plus	1	0	0	0
238	NB-mRNA_Clustering_CNMF	1	0	0	0
239	NB-mRNA_Clustering_Consensus_Plus	1	0	0	0
240	NB-mRNAseq_Clustering_CNMF	1	0	0	0
241	NB-mRNAseq_Clustering_Consensus_Plus	1	0	0	0
242	NB-Mutation_APOBEC	1	0	0	0
243	NB-Mutation_Assessor	1	0	0	0
244	NB-Mutation_CHASM	1	0	0	0
245	NB-Mutation_CoOccurrence	1	0	0	0
246	NB-Mutation_CoOccurrence_Custom	1	0	0	0
247	NB-MutSigNozzleReport2.0	1	0	0	0
248	NB-MutSigNozzleReport2CV	1	0	0	0
249	NB-MutSigNozzleReportCV	1	0	0	0
250	NB-MutSigPreprocess2.0	1	0	0	0
251	NB-MutSigRun2.0	1	0	0	0
252	NB-MutSigRun2CV	1	0	0	0
253	NB-MutSigRunCV	1	0	0	0
254	NB-Paradigm_mRNA	1	0	0	0
255	NB-Paradigm_mRNA_And_CopyNumber	1	0	0	0
256	NB-Paradigm_Prepare_mRNA	1	0	0	0
257	NB-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0
258	NB-Paradigm_Prepare_RNASeq	1	0	0	0
259	NB-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0
260	NB-Paradigm_Preprocess_mRNA	1	0	0	0
261	NB-ParadigmPreprocess_mRNA	1	0	0	0
262	NB-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0
263	NB-Paradigm_Preprocess_RNASeq	1	0	0	0
264	NB-ParadigmPreprocess_RNASeq	1	0	0	0
265	NB-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
266	NB-Paradigm_Report_Preprocess_mRNA	1	0	0	0
267	NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0
268	NB-Paradigm_Report_Preprocess_RNASeq	1	0	0	0
269	NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0
270	NB-Paradigm_RNASeq	1	0	0	0
271	NB-Paradigm_RNASeq_And_Copy_Number	1	0	0	0
272	NB-Pathway_FindEnrichedGenes	1	0	0	0
273	NB-Pathway_GSEA_mRNAseq	1	0	0	0
274	NB-Pathway_Hotnet	1	0	0	0
275	NB-Pathway_Overlaps_MSigDB_MutSig2CV	1	0	0	0
276	NB-Pathway_Paradigm_mRNA	1	0	0	0
277	NB-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0
278	NB-Pathway_Paradigm_RNASeq	1	0	0	0
279	NB-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0
280	NB-ProcessCoverageForMutSig2.0	1	0	0	0
281	NB-RPPA_Clustering_CNMF	1	0	0	0
282	NB-RPPA_Clustering_Consensus_Plus	1	0	0	0
	Total	198	18	64	2

This table generated on Fri Jun 10 09:06:41 2016

Broad GDAC Analyses Status integration Run for Tumor Type: UVM

Broad GDAC Analyses Status
integration Run for Tumor Type: UVM