| task | ACC | BLCA | BRCA | CESC | CHOL | COAD | COADREAD | DLBC | ESCA | FPPP | GBM | GBMLGG | HNSC | KICH | KIPAN | KIRC | KIRP | LAML | LGG | LIHC | LUAD | LUSC | MESO | OV | PAAD | PCPG | PRAD | READ | SARC | SKCM | STAD | STES | TGCT | THCA | THYM | UCEC | UCS | UVM
|
| Aggregate_AnalysisFeatures | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Aggregate_Gene_Status | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Aggregate_Molecular_Subtype_Clusters | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Append_CustomClinical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CoMut2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CoMut2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CoMutCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CopyNumber_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CopyNumber_Clustering_CNMF_thresholded | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CopyNumber_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CopyNumber_Gistic2_Postprocess_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| CopyNumberLowPass_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_Methylation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_miRseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_Molecular_Subtypes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_Mutation_APOBEC_Categorical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_Mutation_APOBEC_Continuous | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_MutationRate | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Clinical_vs_RPPA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_CopyNumber_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_CopyNumber_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_CopyNumber_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_Methylation_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_molecularSubtype_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_molecularSubtype_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_molecularSubtype_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Correlate_mRNAseq_vs_Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| GenerateStickFigures2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| GenerateStickFigures2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| GenerateStickFiguresCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| iClusterPlus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| LegoPlotter2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| LegoPlotter2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| LegoPlotterCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Methylation_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miR_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miR_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miR_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miRseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miRseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miRseq_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miRseq_Mature_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| miRseq_Mature_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| mRNA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| mRNA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| mRNAseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| mRNAseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Mutation_Assessor | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Mutation_CHASM | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Mutation_CoOccurrence | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Mutation_CoOccurrence_Custom | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| MutSigNozzleReport2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| MutSigNozzleReport2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| MutSigNozzleReportCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| MutSigPreprocess2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| MutSigRun2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| MutSigRun2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| MutSigRunCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Prepare_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Prepare_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Prepare_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Prepare_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| ParadigmPreprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Preprocess_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| ParadigmPreprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Report_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Report_Preprocess_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Report_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_FindEnrichedGenes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_GSEA_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_Hotnet | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_Overlaps_MSigDB_MutSig2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_Paradigm_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| Pathway_Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| ProcessCoverageForMutSig2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| RPPA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| RPPA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Aggregate_AnalysisFeatures | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Aggregate_Gene_Status | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Aggregate_Molecular_Subtype_Clusters | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Append_CustomClinical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CoMut2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CoMut2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CoMutCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CopyNumber_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CopyNumber_Clustering_CNMF_thresholded | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CopyNumber_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CopyNumber_Gistic2_Postprocess_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-CopyNumberLowPass_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_Methylation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_miRseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_Molecular_Subtypes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_MutationRate | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Clinical_vs_RPPA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_CopyNumber_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_CopyNumber_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_CopyNumber_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_Methylation_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_molecularSubtype_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_molecularSubtype_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_molecularSubtype_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Correlate_mRNAseq_vs_Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-GenerateStickFigures2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-GenerateStickFigures2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-GenerateStickFiguresCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-iClusterPlus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-LegoPlotter2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-LegoPlotter2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-LegoPlotterCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Methylation_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miR_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miR_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miR_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miRseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miRseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miRseq_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miRseq_Mature_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-miRseq_Mature_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-mRNA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-mRNA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-mRNAseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-mRNAseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Mutation_Assessor | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Mutation_CHASM | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Mutation_CoOccurrence | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Mutation_CoOccurrence_Custom | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-MutSigNozzleReport2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-MutSigNozzleReport2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-MutSigNozzleReportCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-MutSigPreprocess2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-MutSigRun2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-MutSigRun2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-MutSigRunCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Prepare_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Prepare_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Prepare_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Prepare_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-ParadigmPreprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Preprocess_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-ParadigmPreprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Report_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Report_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_FindEnrichedGenes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_GSEA_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_Hotnet | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_Overlaps_MSigDB_MutSig2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_Paradigm_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-Pathway_Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-ProcessCoverageForMutSig2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-RPPA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TR-RPPA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Aggregate_AnalysisFeatures | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Aggregate_Gene_Status | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Aggregate_Molecular_Subtype_Clusters | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Append_CustomClinical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CoMut2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CoMut2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CoMutCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CopyNumber_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CopyNumber_Clustering_CNMF_thresholded | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CopyNumber_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CopyNumber_Gistic2_Postprocess_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-CopyNumberLowPass_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_Methylation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_miRseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_Molecular_Subtypes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_MutationRate | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Clinical_vs_RPPA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_CopyNumber_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_CopyNumber_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_CopyNumber_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_Methylation_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_molecularSubtype_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_molecularSubtype_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_molecularSubtype_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Correlate_mRNAseq_vs_Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-GenerateStickFigures2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-GenerateStickFigures2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-GenerateStickFiguresCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-iClusterPlus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-LegoPlotter2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-LegoPlotter2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-LegoPlotterCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Methylation_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miR_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miR_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miR_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miRseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miRseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miRseq_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miRseq_Mature_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-miRseq_Mature_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-mRNA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-mRNA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-mRNAseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-mRNAseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Mutation_Assessor | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Mutation_CHASM | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Mutation_CoOccurrence | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Mutation_CoOccurrence_Custom | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-MutSigNozzleReport2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-MutSigNozzleReport2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-MutSigNozzleReportCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-MutSigPreprocess2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-MutSigRun2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-MutSigRun2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-MutSigRunCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Prepare_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Prepare_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Prepare_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Prepare_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-ParadigmPreprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Preprocess_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-ParadigmPreprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Report_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Report_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_FindEnrichedGenes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_GSEA_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_Hotnet | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_Overlaps_MSigDB_MutSig2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_Paradigm_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-Pathway_Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-ProcessCoverageForMutSig2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-RPPA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TP-RPPA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Aggregate_AnalysisFeatures | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Aggregate_Gene_Status | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Aggregate_Molecular_Subtype_Clusters | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Append_CustomClinical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CoMut2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CoMut2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CoMutCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CopyNumber_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CopyNumber_Clustering_CNMF_thresholded | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CopyNumber_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CopyNumber_Gistic2_Postprocess_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-CopyNumberLowPass_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_Methylation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_miRseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_Molecular_Subtypes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_MutationRate | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Clinical_vs_RPPA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_CopyNumber_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_CopyNumber_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_CopyNumber_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_Methylation_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_molecularSubtype_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_molecularSubtype_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_molecularSubtype_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Correlate_mRNAseq_vs_Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-GenerateStickFigures2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-GenerateStickFigures2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-GenerateStickFiguresCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-iClusterPlus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-LegoPlotter2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-LegoPlotter2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-LegoPlotterCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Methylation_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miR_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miR_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miR_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miRseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miRseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miRseq_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miRseq_Mature_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-miRseq_Mature_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-mRNA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-mRNA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-mRNAseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-mRNAseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Mutation_Assessor | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Mutation_CHASM | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Mutation_CoOccurrence | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Mutation_CoOccurrence_Custom | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-MutSigNozzleReport2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-MutSigNozzleReport2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-MutSigNozzleReportCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-MutSigPreprocess2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-MutSigRun2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-MutSigRun2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-MutSigRunCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Prepare_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Prepare_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Prepare_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Prepare_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-ParadigmPreprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Preprocess_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-ParadigmPreprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Report_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Report_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_FindEnrichedGenes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_GSEA_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_Hotnet | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_Overlaps_MSigDB_MutSig2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_Paradigm_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-Pathway_Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-ProcessCoverageForMutSig2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-RPPA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| TM-RPPA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Aggregate_AnalysisFeatures | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Aggregate_Gene_Status | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Aggregate_Molecular_Subtype_Clusters | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Append_CustomClinical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CoMut2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CoMut2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CoMutCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CopyNumber_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CopyNumber_Clustering_CNMF_thresholded | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CopyNumber_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CopyNumber_Gistic2_Postprocess_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-CopyNumberLowPass_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_Methylation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_miRseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_Molecular_Subtypes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_MutationRate | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Clinical_vs_RPPA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_CopyNumber_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_CopyNumber_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_CopyNumber_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_Methylation_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_molecularSubtype_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_molecularSubtype_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_molecularSubtype_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Correlate_mRNAseq_vs_Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-GenerateStickFigures2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-GenerateStickFigures2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-GenerateStickFiguresCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-iClusterPlus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-LegoPlotter2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-LegoPlotter2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-LegoPlotterCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Methylation_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miR_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miR_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miR_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miRseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miRseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miRseq_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miRseq_Mature_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-miRseq_Mature_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-mRNA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-mRNA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-mRNAseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-mRNAseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Mutation_Assessor | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Mutation_CHASM | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Mutation_CoOccurrence | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Mutation_CoOccurrence_Custom | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-MutSigNozzleReport2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-MutSigNozzleReport2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-MutSigNozzleReportCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-MutSigPreprocess2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-MutSigRun2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-MutSigRun2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-MutSigRunCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Prepare_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Prepare_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Prepare_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Prepare_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-ParadigmPreprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Preprocess_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-ParadigmPreprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Report_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Report_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_FindEnrichedGenes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_GSEA_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_Hotnet | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_Overlaps_MSigDB_MutSig2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_Paradigm_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-Pathway_Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-ProcessCoverageForMutSig2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-RPPA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NT-RPPA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Aggregate_AnalysisFeatures | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Aggregate_Gene_Status | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Aggregate_Molecular_Subtype_Clusters | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Append_CustomClinical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CoMut2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CoMut2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CoMutCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CopyNumber_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CopyNumber_Clustering_CNMF_thresholded | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CopyNumber_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CopyNumber_Gistic2_Postprocess_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-CopyNumberLowPass_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_Methylation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_miRseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_Molecular_Subtypes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_MutationRate | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Clinical_vs_RPPA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_CopyNumber_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_CopyNumber_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_CopyNumber_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_Methylation_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_molecularSubtype_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_molecularSubtype_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_molecularSubtype_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Correlate_mRNAseq_vs_Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-GenerateStickFigures2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-GenerateStickFigures2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-GenerateStickFiguresCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-iClusterPlus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-LegoPlotter2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-LegoPlotter2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-LegoPlotterCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Methylation_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miR_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miR_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miR_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miRseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miRseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miRseq_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miRseq_Mature_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-miRseq_Mature_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-mRNA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-mRNA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-mRNAseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-mRNAseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Mutation_Assessor | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Mutation_CHASM | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Mutation_CoOccurrence | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Mutation_CoOccurrence_Custom | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-MutSigNozzleReport2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-MutSigNozzleReport2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-MutSigNozzleReportCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-MutSigPreprocess2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-MutSigRun2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-MutSigRun2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-MutSigRunCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Prepare_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Prepare_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Prepare_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Prepare_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-ParadigmPreprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Preprocess_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-ParadigmPreprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Report_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Report_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_FindEnrichedGenes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_GSEA_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_Hotnet | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_Overlaps_MSigDB_MutSig2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_Paradigm_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-Pathway_Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-ProcessCoverageForMutSig2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-RPPA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| NB-RPPA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Aggregate_AnalysisFeatures | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Aggregate_Gene_Status | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Aggregate_Molecular_Subtype_Clusters | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Append_CustomClinical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CoMut2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CoMut2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CoMutCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CopyNumber_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CopyNumber_Clustering_CNMF_thresholded | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CopyNumber_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CopyNumber_Gistic2_Postprocess_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-CopyNumberLowPass_Gistic2 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_Methylation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_miRseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_Molecular_Subtypes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Categorical | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_Mutation_APOBEC_Continuous | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_MutationRate | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Clinical_vs_RPPA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_CopyNumber_vs_miR | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_CopyNumber_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_CopyNumber_vs_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_Methylation_vs_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_molecularSubtype_vs_CopyNumber_Arm | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_molecularSubtype_vs_CopyNumber_Focal | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_molecularSubtype_vs_Mutation | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Correlate_mRNAseq_vs_Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-GenerateStickFigures2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-GenerateStickFigures2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-GenerateStickFiguresCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-iClusterPlus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-LegoPlotter2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-LegoPlotter2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-LegoPlotterCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Methylation_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miR_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miR_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miR_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miRseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miRseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miRseq_FindDirectTargets | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miRseq_Mature_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-miRseq_Mature_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-mRNA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-mRNA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-mRNAseq_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-mRNAseq_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Mutation_APOBEC | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Mutation_Assessor | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Mutation_CHASM | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Mutation_CoOccurrence | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Mutation_CoOccurrence_Custom | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-MutSigNozzleReport2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-MutSigNozzleReport2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-MutSigNozzleReportCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-MutSigPreprocess2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-MutSigRun2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-MutSigRun2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-MutSigRunCV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Prepare_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Prepare_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Prepare_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Prepare_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-ParadigmPreprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Preprocess_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-ParadigmPreprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Report_Preprocess_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Report_Preprocess_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_FindEnrichedGenes | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_GSEA_mRNAseq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_Hotnet | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_Overlaps_MSigDB_MutSig2CV | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_Paradigm_mRNA | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_Paradigm_mRNA_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_Paradigm_RNASeq | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-Pathway_Paradigm_RNASeq_And_Copy_Number | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-ProcessCoverageForMutSig2.0 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-RPPA_Clustering_CNMF | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| FFPE-RPPA_Clustering_Consensus_Plus | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |