Broad GDAC Analyses Status
integration Run for Tumor Type: ACC
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
ACC
92
92
90
0
80
0
79
0
80
46
90
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
0
1
0
2
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
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3
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
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4
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
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5
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
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6
CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
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CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
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CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
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CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
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CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
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11
CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
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12
Merge_Clinical
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24
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26
Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
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Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
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Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
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Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
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Methylation_Preprocess
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1
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miRseq_Mature_Preprocess
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1
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miRseq_Preprocess
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1
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mRNA_Preprocess_Median
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mRNAseq_Preprocess
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1
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Mutation_Oncotator_Calls
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0
90
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79
Mutation_Oncotator_Raw_Calls
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0
0
0
0
80
Mutation_Packager_Calls
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1
0
0
0
81
Mutation_Packager_Coverage
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1
0
0
0
82
Mutation_Packager_Oncotated_Calls
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1
0
0
0
83
Mutation_Packager_Oncotated_Raw_Calls
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0
0
0
0
84
Mutation_Packager_Raw_Calls
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0
0
0
0
85
Mutation_Packager_Raw_Coverage
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0
0
0
0
86
RPPA_AnnotateWithGene
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0
0
1
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87
TP-Clinical_Pick_Tier1
0
0
0
1
0
88
TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
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TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
1
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0
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TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
1
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0
0
0
91
TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
1
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0
0
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TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
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TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
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TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
1
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TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
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TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
1
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TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
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0
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TP-Merge_Clinical
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TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
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TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
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TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
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TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
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TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
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TP-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
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TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
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TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
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TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
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TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
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TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
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TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data
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0
322
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
323
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
324
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
325
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
326
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
327
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
328
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
329
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
330
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
331
NB-Methylation_Preprocess
1
0
0
0
0
332
NB-miRseq_Mature_Preprocess
1
0
0
0
0
333
NB-miRseq_Preprocess
1
0
0
0
0
334
NB-mRNA_Preprocess_Median
1
0
0
0
0
335
NB-mRNAseq_Preprocess
1
0
0
0
0
336
NB-Mutation_Oncotator_Calls
87
0
0
0
0
337
NB-Mutation_Oncotator_Raw_Calls
87
0
0
0
0
338
NB-Mutation_Packager_Calls
1
0
0
0
0
339
NB-Mutation_Packager_Coverage
1
0
0
0
0
340
NB-Mutation_Packager_Oncotated_Calls
1
0
0
0
0
341
NB-Mutation_Packager_Oncotated_Raw_Calls
1
0
0
0
0
342
NB-Mutation_Packager_Raw_Calls
1
0
0
0
0
343
NB-Mutation_Packager_Raw_Coverage
1
0
0
0
0
344
NB-RPPA_AnnotateWithGene
1
0
0
0
0
Total
828
6
0
238
0
This table generated on Thu Nov 3 10:13:58 2016