Broad GDAC Analyses Status
integration Run for Tumor Type: DLBC
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
DLBC
58
48
48
0
48
0
48
0
47
33
48
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
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0
0
1
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2
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
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CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
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Mutation_Packager_Raw_Calls
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Mutation_Packager_Raw_Coverage
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RPPA_AnnotateWithGene
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TP-Clinical_Pick_Tier1
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TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
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320
NBM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
321
NBM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
322
NBM-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
323
NBM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
324
NBM-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
325
NBM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
326
NBM-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
327
NBM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
328
NBM-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
329
NBM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
330
NBM-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
331
NBM-Methylation_Preprocess
1
0
0
0
0
332
NBM-miRseq_Mature_Preprocess
1
0
0
0
0
333
NBM-miRseq_Preprocess
1
0
0
0
0
334
NBM-mRNA_Preprocess_Median
1
0
0
0
0
335
NBM-mRNAseq_Preprocess
1
0
0
0
0
336
NBM-Mutation_Oncotator_Calls
4
0
0
0
0
337
NBM-Mutation_Oncotator_Raw_Calls
4
0
0
0
0
338
NBM-Mutation_Packager_Calls
1
0
0
0
0
339
NBM-Mutation_Packager_Coverage
1
0
0
0
0
340
NBM-Mutation_Packager_Oncotated_Calls
1
0
0
0
0
341
NBM-Mutation_Packager_Oncotated_Raw_Calls
1
0
0
0
0
342
NBM-Mutation_Packager_Raw_Calls
1
0
0
0
0
343
NBM-Mutation_Packager_Raw_Coverage
1
0
0
0
0
344
NBM-RPPA_AnnotateWithGene
1
0
0
0
0
Total
608
6
0
154
0
This table generated on Thu Nov 3 10:14:03 2016