Broad GDAC integration Run Status : PANCAN12

Cohort

BCR

Clinical

LowP

Methylation

mRNA

mRNASeq

miR

miRSeq

RPPA

MAF

rawMAF

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	Successful
1	Clinical_Pick_Tier1	0	0	1
2	CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
3	CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
4	CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
5	CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
6	CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
7	CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
8	CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
9	CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
10	CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
11	CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
12	Merge_Clinical	0	0	1
13	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
14	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
15	Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
16	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
17	Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
18	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	0	0	1
19	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	0	0	1
20	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	0	1	0
21	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
22	Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
23	Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
24	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
25	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
26	Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
27	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
28	Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
29	Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	0	1	0
30	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	0	1
31	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	0	1
32	Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	0	1
33	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	0	0	1
34	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	0	0	1
35	Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	0	1
36	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	0	1
37	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	0	1
38	Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	0	1
39	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	0	0	1
40	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	0	0	1
41	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	0	1
42	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
43	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
44	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
45	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
46	Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
47	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
48	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
49	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
50	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
51	Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
52	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
53	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
54	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
55	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
56	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
57	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	0	0	1
58	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
59	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	0	0	1
60	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	0	0	1
61	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
62	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	0	0	1
63	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	0	1
64	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	0	1
65	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	0	1
66	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	0	1
67	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	0	1
68	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	0	1
69	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	0	0	1
70	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	0	0	1
71	mRNAseq_Preprocess	0	1	0
72	Mutation_Packager_Calls	0	0	1
73	Mutation_Packager_Coverage	0	0	1
74	RPPA_AnnotateWithGene	1	0	0
75	TR-Clinical_Pick_Tier1	0	0	1
76	TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
77	TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
78	TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
79	TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
80	TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
81	TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
82	TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
83	TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
84	TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
85	TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
86	TR-Merge_Clinical	0	0	1
87	TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
88	TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
89	TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0	0
90	TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
91	TR-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
92	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	0	0	1
93	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	0	0	1
94	TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	0	0	1
95	TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
96	TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
97	TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
98	TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
99	TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	1	0	0
100	TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	1	0	0
101	TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
102	TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
103	TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	1	0	0
104	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
105	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
106	TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
107	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
108	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
109	TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
110	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	0	1
111	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	0	1
112	TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	0	1
113	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
114	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
115	TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
116	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	1	0	0
117	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	1	0	0
118	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	1	0	0
119	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	1	0	0
120	TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	1	0	0
121	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
122	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
123	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
124	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	0	0	1
125	TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	0	0	1
126	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
127	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
128	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
129	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
130	TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
131	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	0	0	1
132	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
133	TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	0	0	1
134	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
135	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
136	TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
137	TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
138	TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
139	TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
140	TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
141	TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	0	0	1
142	TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	0	0	1
143	TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	0	0	1
144	TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	0	0	1
145	TR-mRNAseq_Preprocess	0	0	1
146	TR-Mutation_Packager_Calls	0	0	1
147	TR-Mutation_Packager_Coverage	0	0	1
148	TR-RPPA_AnnotateWithGene	1	0	0
149	TP-Clinical_Pick_Tier1	0	0	1
150	TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
151	TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
152	TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
153	TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
154	TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
155	TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
156	TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
157	TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
158	TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
159	TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
160	TP-Merge_Clinical	0	0	1
161	TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
162	TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
163	TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	0	0	1
164	TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
165	TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	0	0	1
166	TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	0	0	1
167	TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	0	0	1
168	TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	0	1	0
169	TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
170	TP-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
171	TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
172	TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	0	0	1
173	TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
174	TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
175	TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
176	TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
177	TP-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	0	1	0
178	TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
179	TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
180	TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
181	TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	0	0	1
182	TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	0	0	1
183	TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	0	1
184	TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	0	0	1
185	TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	0	0	1
186	TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	0	0	1
187	TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	0	0	1
188	TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	0	0	1
189	TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	0	0	1
190	TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	0	0	1
191	TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	0	0	1
192	TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	0	0	1
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522	NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
523	NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
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525	NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
526	NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
527	NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
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567	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	1	0	0
568	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	1	0	0
569	NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	1	0	0
570	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
571	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
572	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
573	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
574	NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
575	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
576	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
577	NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
578	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
579	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	0	0	1
580	NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
581	NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
582	NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
583	NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
584	NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
585	NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
586	NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
587	NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1	0	0
588	NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1	0	0
589	NB-mRNAseq_Preprocess	1	0	0
590	NB-Mutation_Packager_Calls	1	0	0
591	NB-Mutation_Packager_Coverage	1	0	0
592	NB-RPPA_AnnotateWithGene	1	0	0
593	FFPE-Clinical_Pick_Tier1	1	0	0
594	FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB	1	0	0
595	FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT	1	0	0
596	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB	1	0	0
597	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT	1	0	0
598	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB	1	0	0
599	FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT	1	0	0
600	FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB	1	0	0
601	FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT	1	0	0
602	FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB	1	0	0
603	FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT	1	0	0
604	FFPE-Merge_Clinical	1	0	0
605	FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0	0
606	FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
607	FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1	0	0
608	FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
609	FFPE-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg	1	0	0
610	FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	1	0	0
611	FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	1	0	0
612	FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	1	0	0
613	FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	1	0	0
614	FFPE-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	0	0	1
615	FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
616	FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1	0	0
617	FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	1	0	0
618	FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	1	0	0
619	FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data	0	1	0
620	FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data	0	0	1
621	FFPE-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data	1	0	0
622	FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
623	FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
624	FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
625	FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
626	FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
627	FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
628	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data	1	0	0
629	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data	1	0	0
630	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data	1	0	0
631	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data	1	0	0
632	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data	1	0	0
633	FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data	1	0	0
634	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data	1	0	0
635	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data	1	0	0
636	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	1	0	0
637	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	1	0	0
638	FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	1	0	0
639	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data	1	0	0
640	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data	1	0	0
641	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data	1	0	0
642	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data	1	0	0
643	FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data	1	0	0
644	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	0	0	1
645	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg	0	0	1
646	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg	0	0	1
647	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg	0	0	1
648	FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg	0	0	1
649	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
650	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
651	FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
652	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1	0	0
653	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1	0	0
654	FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1	0	0
655	FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
656	FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
657	FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
658	FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
659	FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1	0	0
660	FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1	0	0
661	FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1	0	0
662	FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1	0	0
663	FFPE-mRNAseq_Preprocess	1	0	0
664	FFPE-Mutation_Packager_Calls	1	0	0
665	FFPE-Mutation_Packager_Coverage	1	0	0
666	FFPE-RPPA_AnnotateWithGene	1	0	0
	Total	381	13	272

This table generated on Thu Nov 3 10:14:14 2016

Broad GDAC Analyses Status integration Run for Tumor Type: PANCAN12

Broad GDAC Analyses Status
integration Run for Tumor Type: PANCAN12