Broad GDAC Analyses Status
integration Run for Tumor Type: PCPG
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
PCPG
179
179
175
0
179
0
179
0
179
80
179
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
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1
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2
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
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RPPA_AnnotateWithGene
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0
483
NB-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data
1
0
0
0
0
484
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
0
0
0
1
0
485
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
0
0
0
1
0
486
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
487
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
0
0
0
1
0
488
NB-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
489
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
490
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
491
NB-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
492
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
493
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
494
NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
495
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
496
NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
497
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
498
NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
499
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
500
NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
501
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
502
NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
503
NB-Methylation_Preprocess
1
0
0
0
0
504
NB-miRseq_Mature_Preprocess
1
0
0
0
0
505
NB-miRseq_Preprocess
1
0
0
0
0
506
NB-mRNA_Preprocess_Median
1
0
0
0
0
507
NB-mRNAseq_Preprocess
1
0
0
0
0
508
NB-Mutation_Oncotator_Calls
177
0
0
0
0
509
NB-Mutation_Oncotator_Raw_Calls
177
0
0
0
0
510
NB-Mutation_Packager_Calls
1
0
0
0
0
511
NB-Mutation_Packager_Coverage
1
0
0
0
0
512
NB-Mutation_Packager_Oncotated_Calls
1
0
0
0
0
513
NB-Mutation_Packager_Oncotated_Raw_Calls
1
0
0
0
0
514
NB-Mutation_Packager_Raw_Calls
1
0
0
0
0
515
NB-Mutation_Packager_Raw_Coverage
1
0
0
0
0
516
NB-RPPA_AnnotateWithGene
1
0
0
0
0
Total
1472
21
0
475
0
This table generated on Thu Nov 3 10:14:16 2016