Broad GDAC Analyses Status
integration Run for Tumor Type: UCEC
Cohort
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNASeq
miR
miRSeq
RPPA
MAF
rawMAF
UCEC
560
548
540
106
547
54
545
0
538
440
248
0
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
0
1
0
2
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
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3
CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
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4
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
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5
CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
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CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
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CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
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CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
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CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
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CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
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11
CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
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12
Merge_Clinical
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24
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26
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Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
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29
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55
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56
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0
1
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57
Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
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1
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Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
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1
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Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
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0
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Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
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Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
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Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
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Methylation_Preprocess
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1
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miRseq_Mature_Preprocess
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1
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miRseq_Preprocess
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1
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76
mRNA_Preprocess_Median
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mRNAseq_Preprocess
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Mutation_Oncotator_Calls
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248
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79
Mutation_Oncotator_Raw_Calls
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80
Mutation_Packager_Calls
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81
Mutation_Packager_Coverage
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82
Mutation_Packager_Oncotated_Calls
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0
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0
83
Mutation_Packager_Oncotated_Raw_Calls
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84
Mutation_Packager_Raw_Calls
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0
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0
85
Mutation_Packager_Raw_Coverage
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0
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0
86
RPPA_AnnotateWithGene
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1
0
87
TR-Clinical_Pick_Tier1
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1
0
0
0
88
TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB
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TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT
1
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TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB
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TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT
1
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0
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TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB
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TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT
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TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB
1
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TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT
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TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB
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0
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TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT
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0
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0
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TR-Merge_Clinical
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TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg
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TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg
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TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg
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TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg
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TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data
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TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
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TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data
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TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
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TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data
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TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data
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TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data
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TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data
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TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data
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TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data
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TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data
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TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data
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TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data
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TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data
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TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
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TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
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TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data
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TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data
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TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data
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TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
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0
484
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed
0
0
0
1
0
485
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg
0
0
0
1
0
486
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg
0
0
0
1
0
487
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg
0
0
0
1
0
488
FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg
0
0
0
1
0
489
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
490
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
491
FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
492
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg
1
0
0
0
0
493
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg
1
0
0
0
0
494
FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg
1
0
0
0
0
495
FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
496
FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
497
FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
498
FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
499
FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data
1
0
0
0
0
500
FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data
1
0
0
0
0
501
FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data
1
0
0
0
0
502
FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data
1
0
0
0
0
503
FFPE-Methylation_Preprocess
0
0
0
1
0
504
FFPE-miRseq_Mature_Preprocess
0
1
0
0
0
505
FFPE-miRseq_Preprocess
0
1
0
0
0
506
FFPE-mRNA_Preprocess_Median
1
0
0
0
0
507
FFPE-mRNAseq_Preprocess
1
0
0
0
0
508
FFPE-Mutation_Oncotator_Calls
4
0
0
0
0
509
FFPE-Mutation_Oncotator_Raw_Calls
4
0
0
0
0
510
FFPE-Mutation_Packager_Calls
1
0
0
0
0
511
FFPE-Mutation_Packager_Coverage
1
0
0
0
0
512
FFPE-Mutation_Packager_Oncotated_Calls
1
0
0
0
0
513
FFPE-Mutation_Packager_Oncotated_Raw_Calls
1
0
0
0
0
514
FFPE-Mutation_Packager_Raw_Calls
1
0
0
0
0
515
FFPE-Mutation_Packager_Raw_Coverage
1
0
0
0
0
516
FFPE-RPPA_AnnotateWithGene
1
0
0
0
0
Total
4404
13
0
639
0
This table generated on Thu Nov 3 10:14:22 2016