Dear TCGA Colleagues,

Version 2012_06_23 of the Firehose stddata package has been released and will
be available in the protected data tree pending internal mirroring by the DCC.
Highlights of this run are given below, and in our dashboard release notes at

			http://gdac.broadinstitute.org

If you have any questions or comments please do not hesitate to send them to
our gdac@broadinstitute.org mailing list.


Regards,
Michael S. Noble
Broad Institute of MIT & Harvard

--------------------------------------------------------------------------------

-   New DNAseq column in data table, reflecting low-pass DNAseq copy number datatype from HMS:

        Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg

-   New pipelines for RNAseq v2 data from UNC:

        Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data
        Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data
        Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data
        Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data
        Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data

-   New pipelines for HiSeq RNAseq data from BCGSC:

        Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data
        Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data
        Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data


- cut/paste release notes from
  	https://confluence.broadinstitute.org/display/GDAC/Draft+stddata+Run+Notes
	If sparse, do diffs with last stddata run, to see new tasks/data added
	(and optionally ask team, via email, to verify)

	Usually good to show how sample counts have increased since last run.