CenterNotifications
2016_07_15 Data Snapshot

Table 1.  Get Full Table

Barcode UUID Date Type Category Notes
TCGA-01-0628-11A-01D-0358-06 d125d3f0-0351-43bd-a626-4397184ffa0c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0628-11A-01D-0358-06 d125d3f0-0351-43bd-a626-4397184ffa0c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0628-11A-01D-0358-06 d125d3f0-0351-43bd-a626-4397184ffa0c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0629-11A-01D-0358-06 504801ae-8c48-4122-871c-eb0f2d3d80a2 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0629-11A-01D-0358-06 504801ae-8c48-4122-871c-eb0f2d3d80a2 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0629-11A-01D-0358-06 504801ae-8c48-4122-871c-eb0f2d3d80a2 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0630-11A-01D-0358-06 2c156dcd-8677-4d7b-82dc-83b341b09ec6 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0630-11A-01D-0358-06 2c156dcd-8677-4d7b-82dc-83b341b09ec6 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0630-11A-01D-0358-06 2c156dcd-8677-4d7b-82dc-83b341b09ec6 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0631-11A-01D-0358-06 a5709fe4-5d47-4b76-abe1-c26a3a578ab3 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0631-11A-01D-0358-06 a5709fe4-5d47-4b76-abe1-c26a3a578ab3 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0631-11A-01D-0358-06 a5709fe4-5d47-4b76-abe1-c26a3a578ab3 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0633-11A-01D-0358-06 ff258b7b-6456-4c14-8205-02f34a44141c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0633-11A-01D-0358-06 ff258b7b-6456-4c14-8205-02f34a44141c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0633-11A-01D-0358-06 ff258b7b-6456-4c14-8205-02f34a44141c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0636-11A-01D-0358-06 49df533c-79f1-4d84-a869-861be2803354 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0636-11A-01D-0358-06 49df533c-79f1-4d84-a869-861be2803354 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0636-11A-01D-0358-06 49df533c-79f1-4d84-a869-861be2803354 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0637-11A-01D-0358-06 6c566d19-fa39-4a3d-ba83-c75148901835 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0637-11A-01D-0358-06 6c566d19-fa39-4a3d-ba83-c75148901835 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0637-11A-01D-0358-06 6c566d19-fa39-4a3d-ba83-c75148901835 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0638-11A-02D-0358-06 81367a91-ab9c-410e-9375-09eb65bd7290 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0638-11A-02D-0358-06 81367a91-ab9c-410e-9375-09eb65bd7290 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0638-11A-02D-0358-06 81367a91-ab9c-410e-9375-09eb65bd7290 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0639-11A-01D-0358-06 66bd63ed-b44e-4e7c-8275-0f7746870e14 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0639-11A-01D-0358-06 66bd63ed-b44e-4e7c-8275-0f7746870e14 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0639-11A-01D-0358-06 66bd63ed-b44e-4e7c-8275-0f7746870e14 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-01-0642-11A-02D-0358-06 3304e88e-43b5-483b-bb6d-045c14bc7e3c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-01-0642-11A-02D-0358-06 3304e88e-43b5-483b-bb6d-045c14bc7e3c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-01-0642-11A-02D-0358-06 3304e88e-43b5-483b-bb6d-045c14bc7e3c 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'.
TCGA-02-0004-01A-01G-0293-01 d70523c1-dc78-4e3e-ab97-163a134228aa 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-02-0015-01A-01G-0296-02 7b88d145-7d4c-46c3-b1b2-abc94bf4ab69 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-02-0025-01A-01G-0296-02 6ac0cc2b-fbe6-4f98-b30f-6f9b579a9c36 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-02-0037-10A-01D-0183-04 e5aad5d8-b1f7-4b69-8789-219103eff216 03/13/2009 GBM Center QC failed [mskcc.org]: normal samples not analyzed because the BCR did not send 3ug of DNA
TCGA-02-0039-01A-01G-0296-02 92416cff-76ac-48b5-bbaa-06afb6166c39 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-02-0048-01A-01G-0296-02 caf7658f-d668-401f-a4ca-6c225641773b 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-02-0052-10A-01D-0183-04 4c1c330c-3220-448b-a625-778af68ab57d 03/13/2009 GBM Center QC failed [mskcc.org]: normal samples not analyzed because the BCR did not send 3ug of DNA
TCGA-02-0068-01A-01D-0297-05 7c938870-24fa-478b-a07a-2d126b9394bb 03/13/2009 GBM Center QC failed [jhu-usc.edu]: post-assay QC failures
TCGA-02-0104-01A-01G-0296-02 c12e3f63-db9e-498f-87f9-4e403ba5e179 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-02-0107-10A-01D-0196-04 047c4eb4-6457-4c1f-aee0-c94c5ddc1f6d 03/13/2009 GBM Center QC failed [mskcc.org]: normal samples not analyzed because the BCR did not send 3ug of DNA
TCGA-02-0285-01A-01D-0279-05 e67f06dd-3fd2-44a0-851b-66681b6e70a8 03/13/2009 GBM Center QC failed [jhu-usc.edu]: post-assay QC failures
TCGA-02-0439-01A-01D-0275-01 bd5130da-ac40-44fb-82e8-3f0c4f35cc1f 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-02-0439-01A-01D-0277-06 e6204b80-5c15-436c-9963-8da367189c72 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-02-0439-01A-01D-0277-06 e6204b80-5c15-436c-9963-8da367189c72 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-02-0439-01A-01D-0277-06 e6204b80-5c15-436c-9963-8da367189c72 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'.
TCGA-02-0456-01A-01D-0277-06 834f533f-939e-4429-afb1-aa9139fac2c2 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-02-0456-01A-01D-0277-06 834f533f-939e-4429-afb1-aa9139fac2c2 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-02-0456-01A-01D-0277-06 834f533f-939e-4429-afb1-aa9139fac2c2 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'.
TCGA-04-1331-01A-01R-1569-13 7fbfdb3e-1fd2-4206-8d2e-7f68e4a15844 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1331-01A-01R-1569-13 7fbfdb3e-1fd2-4206-8d2e-7f68e4a15844 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1332-01A-01R-1564-13 08e7c700-7038-40b5-bec0-2dd402e1a225 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT
TCGA-04-1332-01A-01R-1564-13 08e7c700-7038-40b5-bec0-2dd402e1a225 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1337-01A-01R-1564-13 42faaf19-95dd-426c-96d5-f3363c2e12ab 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1337-01A-01R-1564-13 42faaf19-95dd-426c-96d5-f3363c2e12ab 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1338-01A-01R-1564-13 ad64ff86-b39c-4704-823d-98fcefd88db6 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-04-1338-01A-01R-1564-13 ad64ff86-b39c-4704-823d-98fcefd88db6 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1341-01A-01R-1564-13 d525e6af-f667-4891-97ee-856e6052982f 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1341-01A-01R-1564-13 d525e6af-f667-4891-97ee-856e6052982f 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1343-01A-01R-1564-13 e7aeb2b8-2a2d-4175-94f4-0192bd467fed 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1343-01A-01R-1564-13 e7aeb2b8-2a2d-4175-94f4-0192bd467fed 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1347-01A-01R-1564-13 1a59f822-d8fc-4c7a-ad7b-b1b84078e09d 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1347-01A-01R-1564-13 1a59f822-d8fc-4c7a-ad7b-b1b84078e09d 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1350-01A-01R-1565-13 56822a73-96f7-40ba-a5c2-6eec113b52d9 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1350-01A-01R-1565-13 56822a73-96f7-40ba-a5c2-6eec113b52d9 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1351-11A-01D-0458-06 68546297-627c-4b94-a79e-cd71e001d8b2 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.B_Allele_Freq.txt'.
TCGA-04-1351-11A-01D-0458-06 68546297-627c-4b94-a79e-cd71e001d8b2 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Genotypes.txt'.
TCGA-04-1351-11A-01D-0458-06 68546297-627c-4b94-a79e-cd71e001d8b2 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Normal_LogR.txt'.
TCGA-04-1356-01A-01R-1569-13 dc4a5c2f-8b96-4d3b-9553-a02510ba445f 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1356-01A-01R-1569-13 dc4a5c2f-8b96-4d3b-9553-a02510ba445f 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1361-01A-01R-1565-13 746ba0b0-f7a4-4f43-9961-97dccc756e71 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-04-1361-01A-01R-1565-13 746ba0b0-f7a4-4f43-9961-97dccc756e71 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1369-01A-02D-1043-01 2aa36c4f-8057-498b-832c-127ecff9cb03 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-04-1371-11A-01D-0452-01 428cd603-f335-4c08-b215-540f54a42184 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-04-1371-11A-01D-0458-06 ada83e1b-f234-4d6e-bc39-1067ec458cd0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.B_Allele_Freq.txt'.
TCGA-04-1371-11A-01D-0458-06 ada83e1b-f234-4d6e-bc39-1067ec458cd0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Genotypes.txt'.
TCGA-04-1371-11A-01D-0458-06 ada83e1b-f234-4d6e-bc39-1067ec458cd0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Normal_LogR.txt'.
TCGA-04-1517-01A-01R-1565-13 4ef91e20-24f8-4a34-ac26-b316b37be1cf 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1517-01A-01R-1565-13 4ef91e20-24f8-4a34-ac26-b316b37be1cf 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1530-01A-02R-1569-13 b3ad87d3-1240-4fc9-8e29-14a9a5186319 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO
TCGA-04-1530-01A-02R-1569-13 b3ad87d3-1240-4fc9-8e29-14a9a5186319 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1536-01A-01R-1566-13 6d6a042c-5d29-410a-bbe0-d03d78f9cee9 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-04-1536-01A-01R-1566-13 6d6a042c-5d29-410a-bbe0-d03d78f9cee9 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1542-01A-01R-1566-13 2988eb13-a2c0-4cd2-a559-76f0cce2689b 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-04-1542-01A-01R-1566-13 2988eb13-a2c0-4cd2-a559-76f0cce2689b 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1648-01A-01R-1567-13 9248aa41-9572-4b91-8e00-13aa0e3dce12 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-04-1648-01A-01R-1567-13 9248aa41-9572-4b91-8e00-13aa0e3dce12 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1651-01A-01R-1567-13 b8426635-7d02-40e4-b9b9-695ae9a9b3fc 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-04-1651-01A-01R-1567-13 b8426635-7d02-40e4-b9b9-695ae9a9b3fc 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-04-1655-01A-01R-1566-13 520e1d91-a556-4443-8c08-feec29c0c4fe 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-04-1655-01A-01R-1566-13 520e1d91-a556-4443-8c08-feec29c0c4fe 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-05-4244-10A-01D-1877-01 a7a90cd5-3554-4be9-9b28-8ee08f5515e3 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-05-5425-10A-01D-1624-01 2b8558ca-16b1-4984-bfa6-b3f89c703f52 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-06-0119-01A-08D-0216-06 2536717e-1f85-463c-9647-75c6c0e84dc6 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0119-01A-08D-0216-06 2536717e-1f85-463c-9647-75c6c0e84dc6 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0119-01A-08D-0216-06 2536717e-1f85-463c-9647-75c6c0e84dc6 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0119-01A-08D-0216-06 2536717e-1f85-463c-9647-75c6c0e84dc6 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0119-10A-01D-0216-06 c9f451c4-d854-4fc4-899f-2c1158629c41 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0119-10A-01D-0216-06 c9f451c4-d854-4fc4-899f-2c1158629c41 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0119-10A-01D-0216-06 c9f451c4-d854-4fc4-899f-2c1158629c41 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'.
TCGA-06-0121-01A-04D-0216-06 528b1014-9d7c-4732-89d3-851c2e110db1 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0121-01A-04D-0216-06 528b1014-9d7c-4732-89d3-851c2e110db1 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0121-01A-04D-0216-06 528b1014-9d7c-4732-89d3-851c2e110db1 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Unpaired_LogR.txt'.
TCGA-06-0121-10A-01D-0214-01 a0c2d1b5-75a1-44c9-b03f-d5ac3df50199 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-06-0122-10A-01G-0289-01 3a8dfc3f-362f-4f62-a23f-571da9b7dba9 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-06-0129-01A-01G-0289-01 b211db7a-e9e4-44d5-a225-82dbcd049bcd 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-06-0137-01A-02D-0216-06 c9f0b246-e808-4b06-9a4a-f2e462c13abc 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0137-01A-02D-0216-06 c9f0b246-e808-4b06-9a4a-f2e462c13abc 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0137-01A-02D-0216-06 c9f0b246-e808-4b06-9a4a-f2e462c13abc 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0137-01A-02D-0216-06 c9f0b246-e808-4b06-9a4a-f2e462c13abc 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0137-01A-03D-0216-06 3108f9df-c7c7-446c-b0fd-4391edc9b538 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0137-01A-03D-0216-06 3108f9df-c7c7-446c-b0fd-4391edc9b538 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0137-01A-03D-0216-06 3108f9df-c7c7-446c-b0fd-4391edc9b538 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0137-01A-03D-0216-06 3108f9df-c7c7-446c-b0fd-4391edc9b538 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0137-01B-02D-0216-06 e3072d35-c2c6-4d7b-8c53-3dcefcefee87 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0137-01B-02D-0216-06 e3072d35-c2c6-4d7b-8c53-3dcefcefee87 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0137-01B-02D-0216-06 e3072d35-c2c6-4d7b-8c53-3dcefcefee87 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0137-01B-02D-0216-06 e3072d35-c2c6-4d7b-8c53-3dcefcefee87 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0138-01A-02D-0240-06 4928ac8b-6fb4-4996-99d3-6b2099de0ece 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0138-01A-02D-0240-06 4928ac8b-6fb4-4996-99d3-6b2099de0ece 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0138-01A-02D-0240-06 4928ac8b-6fb4-4996-99d3-6b2099de0ece 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0138-01A-02D-0240-06 4928ac8b-6fb4-4996-99d3-6b2099de0ece 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0140-01A-01D-0216-06 4c304c1d-8b6f-4038-9a23-cea3004c7242 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0140-01A-01D-0216-06 4c304c1d-8b6f-4038-9a23-cea3004c7242 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0140-01A-01D-0216-06 4c304c1d-8b6f-4038-9a23-cea3004c7242 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0140-01A-01D-0216-06 4c304c1d-8b6f-4038-9a23-cea3004c7242 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0140-10A-01D-0216-06 2c899a9b-911e-4205-b1ba-42a837a8b870 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0140-10A-01D-0216-06 2c899a9b-911e-4205-b1ba-42a837a8b870 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0140-10A-01D-0216-06 2c899a9b-911e-4205-b1ba-42a837a8b870 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'.
TCGA-06-0141-01A-01D-0216-06 8ac8dade-fe40-4f5b-bb41-efb96b47e667 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0141-01A-01D-0216-06 8ac8dade-fe40-4f5b-bb41-efb96b47e667 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0141-01A-01D-0216-06 8ac8dade-fe40-4f5b-bb41-efb96b47e667 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0141-01A-01D-0216-06 8ac8dade-fe40-4f5b-bb41-efb96b47e667 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0141-10A-01D-0216-06 7f75631d-9048-4f16-ac9c-89b766b85347 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0141-10A-01D-0216-06 7f75631d-9048-4f16-ac9c-89b766b85347 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0141-10A-01D-0216-06 7f75631d-9048-4f16-ac9c-89b766b85347 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'.
TCGA-06-0142-01A-01D-0216-06 31a04320-4b64-43ba-9e91-5d211bdb7a20 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0142-01A-01D-0216-06 31a04320-4b64-43ba-9e91-5d211bdb7a20 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0142-01A-01D-0216-06 31a04320-4b64-43ba-9e91-5d211bdb7a20 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0142-01A-01D-0216-06 31a04320-4b64-43ba-9e91-5d211bdb7a20 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0142-10A-01D-0216-06 c0ca42b9-3aac-49c6-a146-2ad60c772df7 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0142-10A-01D-0216-06 c0ca42b9-3aac-49c6-a146-2ad60c772df7 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0142-10A-01D-0216-06 c0ca42b9-3aac-49c6-a146-2ad60c772df7 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Normal_LogR.txt'.
TCGA-06-0143-01A-01D-0217-02 13576d45-f2c4-43c0-a9e8-e4f0f47b8f35 03/13/2009 GBM Center QC failed [hms.harvard.edu]: Harvard did not submit data for this particular plated sample because it failed. Instead we submitted all level-data for a different plate: TCGA-06-0143-01A-01D-271-02
TCGA-06-0145-01A-02D-0214-01 7cb51115-17f3-4ecc-a59f-3e52dae8e4b7 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-06-0145-01A-02D-0216-06 fea65534-a052-4927-a361-db0a09c41013 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0145-01A-02D-0216-06 fea65534-a052-4927-a361-db0a09c41013 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0145-01A-02D-0216-06 fea65534-a052-4927-a361-db0a09c41013 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0145-01A-02D-0216-06 fea65534-a052-4927-a361-db0a09c41013 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0145-01A-03D-0216-06 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0145-01A-03D-0216-06 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0145-01A-03D-0216-06 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0145-01A-03D-0216-06 0f36cad2-9ab2-4fa7-bad6-fc96e343b7d1 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0145-01A-04D-0216-06 ff2a1571-dbef-4ead-be2c-62f659f7ec7d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0145-01A-04D-0216-06 ff2a1571-dbef-4ead-be2c-62f659f7ec7d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0145-01A-04D-0216-06 ff2a1571-dbef-4ead-be2c-62f659f7ec7d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0145-01A-04D-0216-06 ff2a1571-dbef-4ead-be2c-62f659f7ec7d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0145-01A-05D-0216-06 ca6c67e6-3246-4039-b47f-d16934089a18 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0145-01A-05D-0216-06 ca6c67e6-3246-4039-b47f-d16934089a18 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0145-01A-05D-0216-06 ca6c67e6-3246-4039-b47f-d16934089a18 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0145-01A-05D-0216-06 ca6c67e6-3246-4039-b47f-d16934089a18 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0145-01A-06D-0216-06 6bcd5208-d574-41f4-bb0e-a22742265046 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.B_Allele_Freq.txt'.
TCGA-06-0145-01A-06D-0216-06 6bcd5208-d574-41f4-bb0e-a22742265046 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0145-01A-06D-0216-06 6bcd5208-d574-41f4-bb0e-a22742265046 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Genotypes.txt'.
TCGA-06-0145-01A-06D-0216-06 6bcd5208-d574-41f4-bb0e-a22742265046 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.3.5.0.Paired_LogR.txt'.
TCGA-06-0147-01A-02D-0240-06 58d4e983-82f3-48d2-a8b1-429e6c6017bb 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0147-01A-02D-0240-06 58d4e983-82f3-48d2-a8b1-429e6c6017bb 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0147-01A-02D-0240-06 58d4e983-82f3-48d2-a8b1-429e6c6017bb 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0147-01A-02D-0240-06 58d4e983-82f3-48d2-a8b1-429e6c6017bb 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0148-01A-03D-0240-06 20a3bfe1-8245-4d95-84e9-05d51ce1f9be 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0148-01A-03D-0240-06 20a3bfe1-8245-4d95-84e9-05d51ce1f9be 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0148-01A-03D-0240-06 20a3bfe1-8245-4d95-84e9-05d51ce1f9be 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0148-01A-03D-0240-06 20a3bfe1-8245-4d95-84e9-05d51ce1f9be 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0148-01A-04D-0240-06 b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0148-01A-04D-0240-06 b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0148-01A-04D-0240-06 b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0148-01A-04D-0240-06 b1bd01ac-aaf6-4d70-bf8a-b74f9832ca4c 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0148-01A-05D-0240-06 fa248a09-fbad-4c6b-ba93-c354f5af2c40 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0148-01A-05D-0240-06 fa248a09-fbad-4c6b-ba93-c354f5af2c40 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0148-01A-05D-0240-06 fa248a09-fbad-4c6b-ba93-c354f5af2c40 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0148-01A-05D-0240-06 fa248a09-fbad-4c6b-ba93-c354f5af2c40 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0148-10A-01D-0214-01 14c3feb1-6124-4135-bfd9-c4ccd2f32bcf 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-06-0151-01A-01D-0240-06 af1de979-0ce5-42a6-ab1b-9555a7d0735d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0151-01A-01D-0240-06 af1de979-0ce5-42a6-ab1b-9555a7d0735d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0151-01A-01D-0240-06 af1de979-0ce5-42a6-ab1b-9555a7d0735d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0151-01A-01D-0240-06 af1de979-0ce5-42a6-ab1b-9555a7d0735d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0151-10A-01D-0241-06 3c186bea-f7d6-4bd5-b91e-1ab3b9a9c5fe 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0151-10A-01D-0241-06 3c186bea-f7d6-4bd5-b91e-1ab3b9a9c5fe 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0151-10A-01D-0241-06 3c186bea-f7d6-4bd5-b91e-1ab3b9a9c5fe 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'.
TCGA-06-0154-01A-03D-0240-06 a08221a6-649e-4d26-862f-cf8979a8bd67 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0154-01A-03D-0240-06 a08221a6-649e-4d26-862f-cf8979a8bd67 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0154-01A-03D-0240-06 a08221a6-649e-4d26-862f-cf8979a8bd67 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0154-01A-03D-0240-06 a08221a6-649e-4d26-862f-cf8979a8bd67 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0156-01A-02D-0240-06 5168c0aa-0d48-4405-951f-bbce86a66565 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0156-01A-02D-0240-06 5168c0aa-0d48-4405-951f-bbce86a66565 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0156-01A-02D-0240-06 5168c0aa-0d48-4405-951f-bbce86a66565 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0156-01A-02D-0240-06 5168c0aa-0d48-4405-951f-bbce86a66565 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0156-01A-03D-0240-06 da5c8596-44f2-4e11-93aa-71489c15b1b3 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0156-01A-03D-0240-06 da5c8596-44f2-4e11-93aa-71489c15b1b3 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0156-01A-03D-0240-06 da5c8596-44f2-4e11-93aa-71489c15b1b3 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0156-01A-03D-0240-06 da5c8596-44f2-4e11-93aa-71489c15b1b3 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0159-01A-01D-0240-06 ddae1656-5e95-4cea-b501-3aa0ad90158f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0159-01A-01D-0240-06 ddae1656-5e95-4cea-b501-3aa0ad90158f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0159-01A-01D-0240-06 ddae1656-5e95-4cea-b501-3aa0ad90158f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0159-01A-01D-0240-06 ddae1656-5e95-4cea-b501-3aa0ad90158f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0159-10A-01D-0241-06 9f2b9513-132b-4eb4-b707-1d092bb350db 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0159-10A-01D-0241-06 9f2b9513-132b-4eb4-b707-1d092bb350db 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0159-10A-01D-0241-06 9f2b9513-132b-4eb4-b707-1d092bb350db 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'.
TCGA-06-0164-01A-01D-0279-05 5a892733-56b7-43dc-a8e4-dc41d23cdd26 03/13/2009 GBM Center QC failed [jhu-usc.edu]: post-assay QC failures
TCGA-06-0167-01A-01D-0236-01 4a91d2b3-7ab6-4dde-ad54-08d70c42ae17 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-06-0168-01A-02D-0240-06 08b00f58-555f-4588-a050-588f61fb0e80 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0168-01A-02D-0240-06 08b00f58-555f-4588-a050-588f61fb0e80 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0168-01A-02D-0240-06 08b00f58-555f-4588-a050-588f61fb0e80 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0168-01A-02D-0240-06 08b00f58-555f-4588-a050-588f61fb0e80 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0173-10B-01D-0235-02 632a2364-c3ca-46e5-812a-c73b4acdd74b 03/13/2009 GBM Center QC failed [hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too
TCGA-06-0176-01A-03D-0240-06 6fad6fd1-5709-4451-881a-eb18ad89f201 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0176-01A-03D-0240-06 6fad6fd1-5709-4451-881a-eb18ad89f201 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0176-01A-03D-0240-06 6fad6fd1-5709-4451-881a-eb18ad89f201 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0176-01A-03D-0240-06 6fad6fd1-5709-4451-881a-eb18ad89f201 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0178-01A-01D-0240-06 4f4f7146-acf2-4846-a71d-815c7d3d4db7 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0178-01A-01D-0240-06 4f4f7146-acf2-4846-a71d-815c7d3d4db7 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0178-01A-01D-0240-06 4f4f7146-acf2-4846-a71d-815c7d3d4db7 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0178-01A-01D-0240-06 4f4f7146-acf2-4846-a71d-815c7d3d4db7 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0178-10B-01D-0241-06 e6a1caa3-88d2-4875-9eb8-afb27c05e588 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0178-10B-01D-0241-06 e6a1caa3-88d2-4875-9eb8-afb27c05e588 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0178-10B-01D-0241-06 e6a1caa3-88d2-4875-9eb8-afb27c05e588 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'.
TCGA-06-0190-01A-01D-0240-06 3110ae51-142f-4bd3-bf1f-22b61366b5f8 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0190-01A-01D-0240-06 3110ae51-142f-4bd3-bf1f-22b61366b5f8 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0190-01A-01D-0240-06 3110ae51-142f-4bd3-bf1f-22b61366b5f8 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0190-01A-01D-0240-06 3110ae51-142f-4bd3-bf1f-22b61366b5f8 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0190-10B-01D-0241-06 774e16a2-3afd-4b4f-a567-b516b558d04d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0190-10B-01D-0241-06 774e16a2-3afd-4b4f-a567-b516b558d04d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0190-10B-01D-0241-06 774e16a2-3afd-4b4f-a567-b516b558d04d 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'.
TCGA-06-0195-10A-01D-0235-02 d3b5afcb-c810-46b8-8639-fa1380cef8af 03/13/2009 GBM Center QC failed [hms.harvard.edu]: Sample failed, no data
TCGA-06-0195-10A-01D-0239-04 339ce558-709f-4a68-a30a-ebf9a4c9c733 03/13/2009 GBM Center QC failed [mskcc.org]: did not pass labeling stage
TCGA-06-0216-01A-01D-0240-06 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0216-01A-01D-0240-06 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Delta_B_Allele_Freq.txt'.
TCGA-06-0216-01A-01D-0240-06 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0216-01A-01D-0240-06 62f1d820-d9f0-47eb-95eb-b74e4a6b7891 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Paired_LogR.txt'.
TCGA-06-0216-10A-01D-0241-06 f4b882da-ed8c-487c-933f-4555f5bd0e4a 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-06-0216-10A-01D-0241-06 f4b882da-ed8c-487c-933f-4555f5bd0e4a 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-06-0216-10A-01D-0241-06 f4b882da-ed8c-487c-933f-4555f5bd0e4a 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Normal_LogR.txt'.
TCGA-06-0237-01A-02D-0234-02 4436f06b-d90a-4171-8556-9b70a510d3d9 03/13/2009 GBM Center QC failed [hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too
TCGA-06-0237-10A-01D-0235-02 6e465e6a-0bbc-49d2-a866-33ca3d04d627 03/13/2009 GBM Center QC failed [hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too
TCGA-06-6390-10A-01D-1694-01 3676c57a-6ff9-43e8-aa90-45a069ee9c59 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-07-0227-20A-01D-0240-06 22904500-4c22-4bda-9423-ea1c0ea34bef 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0240-06 22904500-4c22-4bda-9423-ea1c0ea34bef 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0240-06 22904500-4c22-4bda-9423-ea1c0ea34bef 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.4.4.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0277-06 9c964d84-fae6-4dc2-b2ff-07904c3b18d0 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0277-06 9c964d84-fae6-4dc2-b2ff-07904c3b18d0 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0277-06 9c964d84-fae6-4dc2-b2ff-07904c3b18d0 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0358-06 a4b1df01-d7cd-4e8d-a126-028dbb687472 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0358-06 a4b1df01-d7cd-4e8d-a126-028dbb687472 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0358-06 a4b1df01-d7cd-4e8d-a126-028dbb687472 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0401-06 42727edb-b2f9-4624-8d31-2e3a2e4168dc 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0401-06 42727edb-b2f9-4624-8d31-2e3a2e4168dc 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0401-06 42727edb-b2f9-4624-8d31-2e3a2e4168dc 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0430-06 d1d7d345-7610-4277-97f0-174af0c249d0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0430-06 d1d7d345-7610-4277-97f0-174af0c249d0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0430-06 d1d7d345-7610-4277-97f0-174af0c249d0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0458-06 22b257f3-c2aa-414d-8a21-e0fefa9907f9 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0458-06 22b257f3-c2aa-414d-8a21-e0fefa9907f9 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0458-06 22b257f3-c2aa-414d-8a21-e0fefa9907f9 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0474-06 d61e75f4-83cd-412f-9a0a-3b986376eaad 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0474-06 d61e75f4-83cd-412f-9a0a-3b986376eaad 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0474-06 d61e75f4-83cd-412f-9a0a-3b986376eaad 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0498-06 adbd9c08-b29c-4b2a-91a0-d1339d375f74 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0498-06 adbd9c08-b29c-4b2a-91a0-d1339d375f74 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0498-06 adbd9c08-b29c-4b2a-91a0-d1339d375f74 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0560-06 46472901-3b78-474d-9cbb-aca0eb103bc0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.6.1.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0560-06 46472901-3b78-474d-9cbb-aca0eb103bc0 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.6.1.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0579-06 16bfef2e-58d4-4a19-b014-36710f1c88b4 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0579-06 16bfef2e-58d4-4a19-b014-36710f1c88b4 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0579-06 16bfef2e-58d4-4a19-b014-36710f1c88b4 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0665-06 f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0665-06 f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0665-06 f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.Unpaired_LogR.txt'.
TCGA-07-0227-20A-01D-0687-06 3ddfcee3-49cb-4fd3-b3a5-1e428d2a4e27 09/28/2012 LUSC Item flagged DNU SDRF in hudsonalpha.org_LUSC.Human1MDuo.mage-tab.1.1.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_LUSC.Human1MDuo.1.0.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0687-06 3ddfcee3-49cb-4fd3-b3a5-1e428d2a4e27 09/28/2012 LUSC Item flagged DNU SDRF in hudsonalpha.org_LUSC.Human1MDuo.mage-tab.1.1.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_LUSC.Human1MDuo.1.0.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0805-06 43b59109-6ca7-4d05-a0c6-ef754f357961 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.B_Allele_Freq.txt'.
TCGA-07-0227-20A-01D-0805-06 43b59109-6ca7-4d05-a0c6-ef754f357961 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.Genotypes.txt'.
TCGA-07-0227-20A-01D-0805-06 43b59109-6ca7-4d05-a0c6-ef754f357961 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.Unpaired_LogR.txt'.
TCGA-08-0244-01A-01G-0296-02 03552b21-32b2-4509-990f-53aa44b074d7 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-08-0245-01A-01D-0297-05 909d8f79-1bf8-4bc1-96ef-9fefeff34e93 03/13/2009 GBM Center QC failed [jhu-usc.edu]: post-assay QC failures
TCGA-08-0351-01A-01D-0297-05 bd3c31c1-9a91-4694-8836-cce015a94e1d 03/13/2009 GBM Center QC failed [jhu-usc.edu]: post-assay QC failures
TCGA-08-0353-01A-01D-0297-05 65db3e98-7a02-4f59-a512-c36ebf01b03f 03/13/2009 GBM Center QC failed [jhu-usc.edu]: post-assay QC failures
TCGA-08-0354-11A-01G-0293-01 855d2f20-1cff-4dd3-9aa0-02e99f48c9ce 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-08-0355-01A-01G-0296-02 1533580f-3819-473d-9599-95bae278f3a8 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-08-0356-01A-01G-0296-02 62f886bb-ad11-442e-b885-3a0db5405ef3 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-08-0357-11A-01G-0293-01 326b2ad0-9b15-45bb-b8c0-09ff80ae8b6e 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-08-0358-11A-03D-0310-01 a4b36217-af99-4562-9e21-1ffd7586285c 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-08-0359-01A-01G-0296-02 59a3a56b-563f-4f89-beb4-b916b7d40556 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-08-0360-01A-01G-0293-01 7fe6f13e-1e6c-4b23-85d1-60b355b63c77 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-08-0373-01A-01D-0310-01 e3e2be6b-73f7-4867-b547-7b510490419c 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-08-0373-01A-01D-0312-06 d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-08-0373-01A-01D-0312-06 d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Delta_B_Allele_Freq.txt'.
TCGA-08-0373-01A-01D-0312-06 d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-08-0373-01A-01D-0312-06 d4ef26aa-5735-4b8a-8fb1-3ae97b1eec4e 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Paired_LogR.txt'.
TCGA-08-0373-11A-01D-0312-06 e6b7bb98-523e-4b5f-86cf-cd1c82efe93f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-08-0373-11A-01D-0312-06 e6b7bb98-523e-4b5f-86cf-cd1c82efe93f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-08-0373-11A-01D-0312-06 e6b7bb98-523e-4b5f-86cf-cd1c82efe93f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Normal_LogR.txt'.
TCGA-08-0375-01A-01G-0296-02 dd93f7cb-c38e-4ddc-9057-9443477964f9 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: Sample QC failed. Repeat sample was received in Plate 326 and data was submitted
TCGA-08-0385-01A-01G-0293-01 bc9dcc0b-1a95-4706-a6d7-d124cc0ebaf6 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-08-0386-01A-01D-0312-06 b7199ec2-2898-4ea6-9d79-fc6a64b7db41 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-08-0386-01A-01D-0312-06 b7199ec2-2898-4ea6-9d79-fc6a64b7db41 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Delta_B_Allele_Freq.txt'.
TCGA-08-0386-01A-01D-0312-06 b7199ec2-2898-4ea6-9d79-fc6a64b7db41 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-08-0386-01A-01D-0312-06 b7199ec2-2898-4ea6-9d79-fc6a64b7db41 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Paired_LogR.txt'.
TCGA-08-0386-11A-01D-0312-06 7b16ebda-b396-4beb-a8ce-521f14a8c74c 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-08-0386-11A-01D-0312-06 7b16ebda-b396-4beb-a8ce-521f14a8c74c 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-08-0386-11A-01D-0312-06 7b16ebda-b396-4beb-a8ce-521f14a8c74c 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Normal_LogR.txt'.
TCGA-08-0511-01A-01D-0275-01 b188872c-89e2-4979-8b28-7ee96243fbf1 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-08-0520-01A-01D-0277-06 edc17518-f2e0-49d0-9d32-c1f1ca781987 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.B_Allele_Freq.txt'.
TCGA-08-0520-01A-01D-0277-06 edc17518-f2e0-49d0-9d32-c1f1ca781987 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Genotypes.txt'.
TCGA-08-0520-01A-01D-0277-06 edc17518-f2e0-49d0-9d32-c1f1ca781987 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.6.3.0.Unpaired_LogR.txt'.
TCGA-08-0522-01A-01D-0275-01 b212fcfb-6175-4890-8f07-4e40c99d0009 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-09-1661-01B-01R-1566-13 582e6ac5-273a-423d-9169-6393e1b79393 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-09-1661-01B-01R-1566-13 582e6ac5-273a-423d-9169-6393e1b79393 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-09-1665-01B-01R-1566-13 c06f72e0-e59f-4cbb-8233-1eb6637ea23f 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-09-1665-01B-01R-1566-13 c06f72e0-e59f-4cbb-8233-1eb6637ea23f 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-09-2053-01C-01R-1568-13 fd1b7b74-067f-4fc9-820a-b80b5954ee10 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-09-2053-01C-01R-1568-13 fd1b7b74-067f-4fc9-820a-b80b5954ee10 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-10-0926-01A-01R-1564-13 14bb2756-5d32-4e77-9eec-4e5d44b663b2 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-10-0926-01A-01R-1564-13 14bb2756-5d32-4e77-9eec-4e5d44b663b2 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-10-0927-01A-02R-1564-13 1930e83e-d1aa-459e-9f05-ab347df98dbf 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-10-0927-01A-02R-1564-13 1930e83e-d1aa-459e-9f05-ab347df98dbf 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-10-0931-01A-01R-1564-13 3dbc3349-abcf-4e54-879e-1de74ee2b334 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-10-0931-01A-01R-1564-13 3dbc3349-abcf-4e54-879e-1de74ee2b334 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-10-0933-01A-01R-1569-13 484100a8-fa3b-4d8a-9051-de0ba8035cb4 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-10-0933-01A-01R-1569-13 484100a8-fa3b-4d8a-9051-de0ba8035cb4 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-10-0934-01A-02R-1564-13 5b759ce4-2632-4d85-89fe-30a85069e9a8 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-10-0934-01A-02R-1564-13 5b759ce4-2632-4d85-89fe-30a85069e9a8 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-10-0937-01A-02R-1564-13 6392a07a-79e2-4272-abfe-329d1029bb09 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-10-0937-01A-02R-1564-13 6392a07a-79e2-4272-abfe-329d1029bb09 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-10-0938-01A-02R-1564-13 f7b5774e-bfb3-4e6d-8a24-009f3c294109 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-10-0938-01A-02R-1564-13 f7b5774e-bfb3-4e6d-8a24-009f3c294109 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-12-0656-01A-03D-0336-02 3eb30348-8532-49c2-954a-14a5976906a1 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: failed DNA QC, not enough DNA. So these were not processed.
TCGA-12-0657-01A-01D-0336-02 a450fcb5-fdb1-4234-bce3-021b1c75cb64 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: failed DNA QC, not enough DNA. So these were not processed.
TCGA-12-0780-10A-01D-0336-02 69c780fa-b5ec-4f2d-9915-759bad6c2caa 03/13/2009 GBM Center QC failed [hms.harvard.edu]: pre-assay QC failures: failed DNA QC, not enough DNA. So these were not processed.
TCGA-12-1090-10A-01D-0519-06 f61d7cd2-ecff-4e36-89ec-707c125e1d5f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.9.2.0.B_Allele_Freq.txt'.
TCGA-12-1090-10A-01D-0519-06 f61d7cd2-ecff-4e36-89ec-707c125e1d5f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.9.2.0.Genotypes.txt'.
TCGA-12-1090-10A-01D-0519-06 f61d7cd2-ecff-4e36-89ec-707c125e1d5f 09/28/2012 GBM Item flagged DNU SDRF in hudsonalpha.org_GBM.HumanHap550.mage-tab.10.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_GBM.HumanHap550.9.2.0.Normal_LogR.txt'.
TCGA-12-1597-01B-01D-0911-01 8e002c1f-5d5c-47f4-8c33-681cd2c2d3c7 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-12-5299-10A-01D-1479-01 f64b8bac-0bd4-4788-8a40-4634b86448f7 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-0714-01A-01R-1564-13 da337502-6fef-45b6-8770-b2f0889cd802 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT
TCGA-13-0714-01A-01R-1564-13 da337502-6fef-45b6-8770-b2f0889cd802 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0720-01A-01R-1564-13 1fe43034-df2b-4bef-be77-07dbb68083a4 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-0720-01A-01R-1564-13 1fe43034-df2b-4bef-be77-07dbb68083a4 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0724-01A-01R-1564-13 fc6df206-8c77-486c-bc38-06b6cf20139d 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0724-01A-01R-1564-13 fc6df206-8c77-486c-bc38-06b6cf20139d 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0725-01A-01R-1564-13 5551b356-0f0f-4e21-a2f5-cf539b5a490b 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0725-01A-01R-1564-13 5551b356-0f0f-4e21-a2f5-cf539b5a490b 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0726-01A-01R-1564-13 3dd100f9-9261-4e1c-9bbb-95a2c56abfb6 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0726-01A-01R-1564-13 3dd100f9-9261-4e1c-9bbb-95a2c56abfb6 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0727-01A-01R-1564-13 38957b36-539f-42f1-bd83-f8eb348165a4 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0727-01A-01R-1564-13 38957b36-539f-42f1-bd83-f8eb348165a4 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0760-01A-01R-1564-13 12f60ee0-fb87-4ac8-9e91-e6d643064c6d 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-0760-01A-01R-1564-13 12f60ee0-fb87-4ac8-9e91-e6d643064c6d 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0762-01A-01R-1564-13 c2f1b1b8-f914-4665-a779-901ebb41965f 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0762-01A-01R-1564-13 c2f1b1b8-f914-4665-a779-901ebb41965f 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0765-01A-01D-0356-01 f5037f0b-56fa-450b-9942-84884ddc7249 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-0765-01A-01R-1564-13 d5c33d85-54da-455b-aa65-aaec79af99b0 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0765-01A-01R-1564-13 d5c33d85-54da-455b-aa65-aaec79af99b0 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0766-01A-02R-1564-13 30be1179-7922-4af7-b234-270fd88a2965 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-13-0766-01A-02R-1564-13 30be1179-7922-4af7-b234-270fd88a2965 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0768-01A-01R-1569-13 f6907b8b-95a3-47a8-abe0-239c6ae60482 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0768-01A-01R-1569-13 f6907b8b-95a3-47a8-abe0-239c6ae60482 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0795-01A-01R-1564-13 5345eef4-ee81-4128-96fb-85c29750cc96 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0795-01A-01R-1564-13 5345eef4-ee81-4128-96fb-85c29750cc96 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0797-01A-01R-1564-13 9bd35257-52b8-4277-9cc9-48c5f316932b 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0797-01A-01R-1564-13 9bd35257-52b8-4277-9cc9-48c5f316932b 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0804-01A-01R-1564-13 220b144c-9f9c-459a-b332-5d6e5dedb686 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0804-01A-01R-1564-13 220b144c-9f9c-459a-b332-5d6e5dedb686 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0884-01B-01R-1565-13 5339b819-0e19-4b7d-a098-6f58afc07180 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-0884-01B-01R-1565-13 5339b819-0e19-4b7d-a098-6f58afc07180 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0885-01A-02R-1569-13 e0f48d4d-4c10-4b83-9a13-9427a08371d3 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO
TCGA-13-0885-01A-02R-1569-13 e0f48d4d-4c10-4b83-9a13-9427a08371d3 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0886-01A-01R-1569-13 eac4bb8e-83fe-4fdf-822d-8fb126b1da1e 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO
TCGA-13-0886-01A-01R-1569-13 eac4bb8e-83fe-4fdf-822d-8fb126b1da1e 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0887-01A-01R-1564-13 def55de4-e4eb-4693-aa54-889cd0f88051 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0887-01A-01R-1564-13 def55de4-e4eb-4693-aa54-889cd0f88051 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0888-01A-01R-1564-13 b6ee33d9-26fc-491a-90af-25f3da976da0 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0888-01A-01R-1564-13 b6ee33d9-26fc-491a-90af-25f3da976da0 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0891-01A-01R-1564-13 c6666bbe-77cd-497e-88b4-ff73dcf6f399 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-13-0891-01A-01R-1564-13 c6666bbe-77cd-497e-88b4-ff73dcf6f399 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0894-01B-01D-0452-01 3b931696-b77d-417d-b187-50aef6ece607 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-0900-01B-01R-1565-13 48c027ac-0580-43aa-9356-f56b3d897127 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-0900-01B-01R-1565-13 48c027ac-0580-43aa-9356-f56b3d897127 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0901-01B-01R-1565-13 4320fb38-5508-4ba7-87f1-43c4dc70854c 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0901-01B-01R-1565-13 4320fb38-5508-4ba7-87f1-43c4dc70854c 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0905-01B-01R-1565-13 6deb1bf0-273a-47ba-9698-3d38ab05f02c 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0905-01B-01R-1565-13 6deb1bf0-273a-47ba-9698-3d38ab05f02c 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0906-01A-01R-1564-13 7fa0eba3-8a33-425d-a7fb-2fa169e5f8e6 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0906-01A-01R-1564-13 7fa0eba3-8a33-425d-a7fb-2fa169e5f8e6 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0908-01B-01R-1565-13 5324831d-94be-40c6-bcb1-5b29bbbaab1b 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-13-0908-01B-01R-1565-13 5324831d-94be-40c6-bcb1-5b29bbbaab1b 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0911-01A-01R-1564-13 d47147ed-fdb1-4921-9db7-1e0aae32aacb 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0911-01A-01R-1564-13 d47147ed-fdb1-4921-9db7-1e0aae32aacb 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0913-02A-01R-1564-13 733f0607-6c6b-4385-9868-fa6f155a9a2e 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-13-0913-02A-01R-1564-13 733f0607-6c6b-4385-9868-fa6f155a9a2e 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0919-01A-01R-1564-13 36e20dfd-0d88-47bd-bf1f-164e069019d1 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0919-01A-01R-1564-13 36e20dfd-0d88-47bd-bf1f-164e069019d1 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-0923-01A-01R-1564-13 b75de387-11ae-4d46-81a1-54d15ecae42a 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-0923-01A-01R-1564-13 b75de387-11ae-4d46-81a1-54d15ecae42a 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1404-01A-01R-1565-13 5a24a912-7e38-4d60-a1b9-56023d2a321a 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1404-01A-01R-1565-13 5a24a912-7e38-4d60-a1b9-56023d2a321a 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1407-01A-01R-1565-13 2afc4437-8c6b-4f79-804c-b37ed04c4c77 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-1407-01A-01R-1565-13 2afc4437-8c6b-4f79-804c-b37ed04c4c77 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1408-01A-01R-1565-13 cacecdfe-9e01-409c-b45b-5076281b9da8 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1408-01A-01R-1565-13 cacecdfe-9e01-409c-b45b-5076281b9da8 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1409-01A-01R-1565-13 850f50c3-4d01-4838-bd3a-641942bb2855 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1409-01A-01R-1565-13 850f50c3-4d01-4838-bd3a-641942bb2855 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1477-01A-01R-1565-13 eb7fbe7d-ca45-4f35-b384-0d396349da06 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1477-01A-01R-1565-13 eb7fbe7d-ca45-4f35-b384-0d396349da06 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1482-01A-01R-1565-13 197bc1c2-fb72-422a-b6b0-d07cf5b737ef 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-1482-01A-01R-1565-13 197bc1c2-fb72-422a-b6b0-d07cf5b737ef 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1483-01A-01R-1565-13 1120f746-aeb6-457a-946e-46ed665a9211 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1483-01A-01R-1565-13 1120f746-aeb6-457a-946e-46ed665a9211 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1485-01A-02R-1565-13 50f08f95-3c5a-4d6b-bacc-ccb4a3a720b8 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1485-01A-02R-1565-13 50f08f95-3c5a-4d6b-bacc-ccb4a3a720b8 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1487-01A-01R-1565-13 55704c3f-7261-4ab1-bb1e-d8957bfd8952 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1487-01A-01R-1565-13 55704c3f-7261-4ab1-bb1e-d8957bfd8952 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1488-01A-01R-1565-13 fbd513d6-46e8-48f7-9dc3-f7369ad0f3c7 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-1488-01A-01R-1565-13 fbd513d6-46e8-48f7-9dc3-f7369ad0f3c7 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1489-01A-01R-1565-13 dcb03592-9f67-49bf-bc78-d89d69de14a8 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1489-01A-01R-1565-13 dcb03592-9f67-49bf-bc78-d89d69de14a8 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1489-02A-01D-0803-01 cd423cd2-5b84-4397-b64c-967f74a1186f 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-1492-01A-01R-1565-13 3991212e-874f-4c0c-a822-4a149ecda1b2 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1492-01A-01R-1565-13 3991212e-874f-4c0c-a822-4a149ecda1b2 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1495-01A-01R-1565-13 845d11ec-7fc7-4498-a0f4-1187413c5914 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1495-01A-01R-1565-13 845d11ec-7fc7-4498-a0f4-1187413c5914 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1496-01A-01R-1565-13 cbdfb183-b1af-42ed-a47a-5fee3ac1059e 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1496-01A-01R-1565-13 cbdfb183-b1af-42ed-a47a-5fee3ac1059e 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1498-10A-01D-0472-01 0b7f2a7c-9a87-4c38-9048-712c381c905a 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-1499-01A-01R-1565-13 1f677d4c-6feb-4a3a-9f12-ba1d43920a80 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1499-01A-01R-1565-13 1f677d4c-6feb-4a3a-9f12-ba1d43920a80 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1501-01A-01R-1565-13 d6c7ab9b-7928-4b66-9fc7-7d3c8146e92d 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-1501-01A-01R-1565-13 d6c7ab9b-7928-4b66-9fc7-7d3c8146e92d 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1509-01A-01R-1565-13 6e57a2e1-2894-421d-bdeb-7e532a78bdeb 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-13-1509-01A-01R-1565-13 6e57a2e1-2894-421d-bdeb-7e532a78bdeb 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1509-10A-01D-0472-01 2964b8d8-f36c-46b3-bbce-b486516aa055 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-1510-01A-02R-1565-13 b75db551-4254-4736-a089-0a38890e7778 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-13-1510-01A-02R-1565-13 b75db551-4254-4736-a089-0a38890e7778 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-13-1817-01A-01D-0803-01 2a4907d1-d41e-4fb0-875d-3d61448cf975 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-1817-02A-01D-0803-01 9959be6d-ed76-4aa6-995e-d950a11d923f 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-1819-02A-01D-0803-01 72ad27c7-97de-48bf-9857-61ab7488e078 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-13-2066-01A-01D-1043-01 bdda429f-5053-4937-8488-19a21aa95048 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-14-3476-01B-01D-1224-01 8fcb6cc0-ab33-4e69-88df-c3cae742c6ba 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-18-4083-11A-01D-1097-01 b4cc4632-6a96-4599-b172-dd7e196c2777 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-18-4086-11A-01D-1097-01 449df77e-c8b7-48ca-8f4e-812fa2aeadfe 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-19-1788-01A-01D-0591-01 870e9bd2-c4d6-45b8-9cb8-125cdacf61d0 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-19-1790-01B-01D-1224-01 e8676c22-f544-41c3-9075-8c8c9a791db7 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-19-2619-10A-01D-0911-01 71d5fbed-e3e3-4082-8d9b-e96f2da3601a 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-19-2621-10A-01D-0911-01 57f882a4-94e1-48fb-a945-34e2bea7fe4b 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-19-4068-01A-01D-1224-01 d11ceabf-3e4e-46c1-9ddc-42703feaea38 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-19-5951-10A-01D-1694-01 ba340295-37dc-467f-a50f-b4c9ae3602f0 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-20-0987-01A-02R-1564-13 40dafb8b-7311-4ee3-b5bc-9c9c7ffb8cce 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-20-0987-01A-02R-1564-13 40dafb8b-7311-4ee3-b5bc-9c9c7ffb8cce 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-20-0991-01A-01R-1564-13 70004d87-7c1b-40e6-b246-04bb349dca6c 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-20-0991-01A-01R-1564-13 70004d87-7c1b-40e6-b246-04bb349dca6c 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-20-1686-01A-01R-1566-13 efabaf9d-2e46-4d4e-9b1b-763ec4d8d537 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-20-1686-01A-01R-1566-13 efabaf9d-2e46-4d4e-9b1b-763ec4d8d537 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-22-1017-11A-01D-0685-01 803eab71-12ed-47dd-8e69-7bb988493b23 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-22-5492-11A-01D-1631-01 c6a8d655-0c71-4ddf-ac83-06d0a5915f5b 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-23-1021-01B-01R-1564-13 9819f772-6987-47d5-8ab4-235ac2b993e2 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-23-1021-01B-01R-1564-13 9819f772-6987-47d5-8ab4-235ac2b993e2 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1021-10A-01D-0428-01 54067266-ed79-46af-998e-e521a140e77f 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-23-1022-01A-01R-1564-13 2eeb258f-bbc2-4412-9673-cc39915da304 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1022-01A-01R-1564-13 2eeb258f-bbc2-4412-9673-cc39915da304 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1023-01R-01D-0803-01 76fa62b1-c7f9-4264-a862-f0b66eae7966 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-23-1024-01A-02R-1564-13 467ceace-18c4-436b-a8f6-842794c5dfa5 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1024-01A-02R-1564-13 467ceace-18c4-436b-a8f6-842794c5dfa5 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1028-01A-01R-1564-13 8f6e45b3-2857-4eb8-a723-5429f7fd8f0c 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1028-01A-01R-1564-13 8f6e45b3-2857-4eb8-a723-5429f7fd8f0c 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1030-01A-02R-1564-13 0cdd0255-c7b2-4cbc-8306-37e74d295324 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1030-01A-02R-1564-13 0cdd0255-c7b2-4cbc-8306-37e74d295324 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1032-01A-02R-1564-13 494182b5-dc71-4f11-add9-c29d2378768d 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1032-01A-02R-1564-13 494182b5-dc71-4f11-add9-c29d2378768d 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1107-01A-01D-0428-01 e758a0be-9dc0-40de-80f6-7f22ce5bbb38 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-23-1107-01A-01R-1564-13 2b25b605-1d45-499e-99ed-ad9b4a7722a5 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-23-1107-01A-01R-1564-13 2b25b605-1d45-499e-99ed-ad9b4a7722a5 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1110-01A-01R-1564-13 d93e1f93-20d0-493f-8b54-939fa4ba64f9 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY
TCGA-23-1110-01A-01R-1564-13 d93e1f93-20d0-493f-8b54-939fa4ba64f9 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1113-01A-01R-1564-13 88656b94-cd24-4c4c-b625-635ef692cf13 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1113-01A-01R-1564-13 88656b94-cd24-4c4c-b625-635ef692cf13 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1116-01A-01R-1564-13 ab28a926-0266-4602-8e90-529934cf43ab 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1116-01A-01R-1564-13 ab28a926-0266-4602-8e90-529934cf43ab 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1118-01A-01R-1564-13 9e73d9f4-dd7c-439f-a8c5-236311e3facf 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1118-01A-01R-1564-13 9e73d9f4-dd7c-439f-a8c5-236311e3facf 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-1119-01A-02R-1565-13 a0e6000c-2e04-4e12-bce6-ef9c29f04252 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-23-1119-01A-02R-1565-13 a0e6000c-2e04-4e12-bce6-ef9c29f04252 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-23-2647-01A-01D-1043-01 246c6949-4565-4f69-8744-02e05764a274 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-23-2649-01A-01D-1043-01 9b345bb6-89dc-403a-b97b-3d4565942415 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-24-0966-01A-01R-1564-13 63a8de0c-927c-4faf-a596-841871ceb8f9 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-0966-01A-01R-1564-13 63a8de0c-927c-4faf-a596-841871ceb8f9 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-0968-01A-01R-1569-13 b2f7c706-ec61-45d4-9394-44921dc99f8c 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-24-0968-01A-01R-1569-13 b2f7c706-ec61-45d4-9394-44921dc99f8c 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-0970-01B-01R-1565-13 b8ca62bf-dd6f-4984-b2c5-4d077d46d783 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-24-0970-01B-01R-1565-13 b8ca62bf-dd6f-4984-b2c5-4d077d46d783 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-0979-01A-01R-1565-13 639429a9-c1d3-410d-828a-c3b44d648609 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-0979-01A-01R-1565-13 639429a9-c1d3-410d-828a-c3b44d648609 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-0982-01A-01R-1565-13 ae158b16-5d93-42d5-a793-3294629af24d 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-0982-01A-01R-1565-13 ae158b16-5d93-42d5-a793-3294629af24d 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-0982-10C-01D-0428-01 05ab120d-7f85-4eb2-aebb-fa863bb85236 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-24-1104-01A-01R-1565-13 3947333f-7cc5-4044-bc18-01a8f4426017 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-24-1104-01A-01R-1565-13 3947333f-7cc5-4044-bc18-01a8f4426017 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1105-01A-01R-1565-13 fd57adc4-669c-4916-a2f5-e5f92cb0adb6 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-24-1105-01A-01R-1565-13 fd57adc4-669c-4916-a2f5-e5f92cb0adb6 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1426-01A-01R-1565-13 8cd9abeb-c09e-4281-a8c8-1b426796d51e 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-24-1426-01A-01R-1565-13 8cd9abeb-c09e-4281-a8c8-1b426796d51e 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1431-01A-01R-1566-13 0e968ed4-9fbd-482b-b91d-ce7190dc91ed 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-1431-01A-01R-1566-13 0e968ed4-9fbd-482b-b91d-ce7190dc91ed 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1464-01A-01R-1566-13 6eb0fbff-f1b8-4544-91e2-cd593b631ead 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-1464-01A-01R-1566-13 6eb0fbff-f1b8-4544-91e2-cd593b631ead 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1470-01A-01R-1566-13 f2066443-2f17-4279-a993-f07961259108 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-1470-01A-01R-1566-13 f2066443-2f17-4279-a993-f07961259108 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1471-01A-01R-1566-13 a30e415d-8fe3-4d1d-b183-381ab431bb4a 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-24-1471-01A-01R-1566-13 a30e415d-8fe3-4d1d-b183-381ab431bb4a 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1565-01A-01R-1566-13 0d80226b-8c70-44ab-a6d9-f054d89330f3 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT
TCGA-24-1565-01A-01R-1566-13 0d80226b-8c70-44ab-a6d9-f054d89330f3 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1845-01A-01R-1567-13 78b612c0-5323-46e9-962e-497ad3c877c1 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-24-1845-01A-01R-1567-13 78b612c0-5323-46e9-962e-497ad3c877c1 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-1923-01A-01R-1567-13 d34ae25d-8073-4129-a1b8-3f43e19af73b 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-1923-01A-01R-1567-13 d34ae25d-8073-4129-a1b8-3f43e19af73b 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-24-2036-10A-01D-0663-01 ed2274aa-1448-45b1-9bc4-c70cad6d7b0b 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-24-2280-01A-01R-1568-13 e39a23c8-1bc3-4bfb-9b1e-3075f98782fa 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-24-2280-01A-01R-1568-13 e39a23c8-1bc3-4bfb-9b1e-3075f98782fa 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-25-1877-01A-01R-1567-13 39639797-675b-4f3c-9959-7e3344bea0d1 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT
TCGA-25-1877-01A-01R-1567-13 39639797-675b-4f3c-9959-7e3344bea0d1 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-25-2404-10A-01D-0704-01 7ce44622-915c-4c68-a4aa-149d0aa321e5 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-26-1439-10A-01D-1224-01 ab1afdb1-f431-482c-9e69-0c82edb1e5d7 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-27-2519-10A-01D-0784-01 0080a8dc-45ee-4786-be90-25332f2cec66 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-28-1745-01B-01D-0591-01 be1ada79-7164-4d0d-b16d-4b3b667af0dd 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-28-1760-01A-01D-0591-01 3c0e81ab-311a-407c-84e9-74e0f6d56dfb 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-29-1690-10A-01D-0559-01 ad777ab7-4fbb-43d0-bbb6-9a05f3a4ee72 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-29-1692-02A-01D-0803-01 d6562c87-65ed-4155-930f-d01604efa9cd 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-29-1705-02A-01R-1567-13 cc3afd8c-3639-437f-a22b-aadc9f6c5aaa 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT
TCGA-29-1705-02A-01R-1567-13 cc3afd8c-3639-437f-a22b-aadc9f6c5aaa 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-29-1707-02A-01R-1567-13 5a1abe99-6d9f-4534-a32c-30672353ee04 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-29-1707-02A-01R-1567-13 5a1abe99-6d9f-4534-a32c-30672353ee04 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-29-1766-01A-01R-1567-13 fb381f7f-a327-49e1-a13a-bca5a06047d3 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY
TCGA-29-1766-01A-01R-1567-13 fb381f7f-a327-49e1-a13a-bca5a06047d3 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-29-1768-01A-01R-1567-13 d327786c-eb87-43b2-abd1-7bb9446cf34f 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY
TCGA-29-1768-01A-01R-1567-13 d327786c-eb87-43b2-abd1-7bb9446cf34f 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-29-1769-01A-01R-1567-13 f2ac7109-1071-47f7-af2a-2d655c475427 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-29-1769-01A-01R-1567-13 f2ac7109-1071-47f7-af2a-2d655c475427 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-29-1770-02A-01D-0803-01 dea4702d-8a1e-4b70-b463-1ead2345e265 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-29-1774-01A-01R-1567-13 bdb953e0-32fc-4f28-b40f-aa870a2bccb6 07/20/2012 OV Center QC failed RNA-seq:HIGH rRNA CONTENT
TCGA-29-1774-01A-01R-1567-13 bdb953e0-32fc-4f28-b40f-aa870a2bccb6 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-29-1777-01A-01R-1567-13 cbeba637-1a32-45f1-83f3-614725665436 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY
TCGA-29-1777-01A-01R-1567-13 cbeba637-1a32-45f1-83f3-614725665436 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-2A-AAYO-10A-01D-A41M-01 cb0b38e9-ae39-4f69-b158-a2b78d13177e 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2G-AAFL-10A-01D-A432-01 fdb6c19c-3763-4ecd-868d-444432ae2c9c 09/28/2015 TGCT Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2H-A9GG-01A-11D-A37B-01 274a78c3-a699-47be-9f7c-d9ab1a1497af 09/28/2015 ESCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Y-A9GU-10A-01D-A384-01 b045ce7a-0b67-4059-9221-300c395863eb 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Y-A9H0-10A-01D-A384-01 471ea89a-e3c3-49a8-9c08-162f782e65df 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Y-A9H1-10A-01D-A384-01 240665dd-d23f-4249-97ec-e60edf3cf7e5 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Y-A9H2-10A-01D-A384-01 477d545d-b729-4a8f-9adf-07023bb9831a 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Y-A9H6-10A-01D-A38W-01 c241fbae-f62e-45d3-9a61-78e5c996e4d2 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Y-A9HB-10A-01D-A38W-01 022c1e02-73c1-45f5-a8d2-bbc2693adfdc 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Z-A9J6-10A-01D-A384-01 4e8e5aca-0d3b-4188-905a-301dc5373bd4 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Z-A9JD-10A-01D-A42L-01 1a98795b-767e-45ac-9e0f-f50ab97a76df 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Z-A9JG-10A-01D-A42L-01 8210b720-45da-4f25-83de-509d3cf41c98 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Z-A9JI-10A-01D-A42L-01 02151398-fb49-4138-a538-482026a38cc3 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Z-A9JJ-10A-01D-A42L-01 f29fb97b-e983-4349-b309-bc203cf2fede 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Z-A9JM-10A-01D-A42L-01 e2c93d50-6199-454b-b835-054a5affa8a7 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-2Z-A9JQ-10A-01D-A42L-01 6163255d-44f7-48de-9eac-f3dd1daeb85e 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-30-1714-01A-02R-1567-13 c990f93e-c4e1-4192-b948-31a5bda0ff72 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-30-1714-01A-02R-1567-13 c990f93e-c4e1-4192-b948-31a5bda0ff72 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-30-1853-01A-02R-1567-13 fc32468d-de77-4e0e-b1a2-203ac119cb02 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-30-1853-01A-02R-1567-13 fc32468d-de77-4e0e-b1a2-203ac119cb02 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-30-1856-10A-01D-0577-01 b45e8cd2-3cc5-4b5e-a304-f6c84961f441 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-30-1857-01A-02R-1569-13 7fc46368-c523-4936-84e3-bb3f77db7c48 02/16/2015 OV Center QC failed mRNA-seq: LOW 5'/3' COVERAGE RATIO
TCGA-30-1857-01A-02R-1569-13 7fc46368-c523-4936-84e3-bb3f77db7c48 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-30-1866-01A-02R-1568-13 e2c174f6-eac3-449e-879c-9335ccf4ccd6 07/20/2012 OV Center QC failed RNA-seq:LOW 5/3 COVERAGE RATIO
TCGA-30-1866-01A-02R-1568-13 e2c174f6-eac3-449e-879c-9335ccf4ccd6 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-30-1892-01A-01R-1568-13 bb8dc795-80ff-4b42-8cf8-9f9716c13967 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY
TCGA-30-1892-01A-01R-1568-13 bb8dc795-80ff-4b42-8cf8-9f9716c13967 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-32-4209-01A-01D-1224-01 c9e50eda-f288-4539-81ec-65a0a1514f7d 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-32-4210-10A-01D-1224-01 f20d00d8-0206-4ae1-a28c-932cb15a290c 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-34-2605-11A-01D-0844-01 05ffba5e-b449-4891-b693-476cade3564b 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-34-5241-10A-01D-1439-01 a4185f9b-a30a-409e-b11f-b73151b33bb2 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-34-8455-10A-01D-2322-01 24a01f8b-376c-4a5b-9490-79cb060961a8 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-36-2542-10A-01D-1043-01 698c2e32-526b-48a7-938f-5820388385f5 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-36-2551-10A-01D-1043-01 f0cffbf3-ce0c-4d21-b581-c145ea8f44d7 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-37-A5EM-01A-21D-A27J-01 8bfc4ebe-d201-4212-9c80-6adc4632bdaf 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-38-4625-01A-01D-1549-01 687c3d21-ee8d-4353-9267-dd9fa1f43ef9 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-38-4625-10A-01D-1204-01 2961c12e-ca46-42a3-b971-bc292e203a2e 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-38-4626-10A-01D-1204-01 987004ba-7cd5-4a3d-9a6b-0cef35542de4 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3A-A9I5-10A-01D-A38I-01 292ec6e5-d339-4ac5-958a-4f688e402ebf 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3A-A9IB-10A-01D-A399-01 ce70b1fe-db0a-48f2-9720-49095e458ae3 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3A-A9IN-10A-01D-A399-01 d1c915d5-8522-4bd1-a080-beed01a71ad2 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3A-A9IO-10A-01D-A38I-01 7850f0d7-3456-462d-b1a9-228552f22ede 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3A-A9IR-10A-01D-A38I-01 bfb1f1ba-8e32-4f3b-bf4e-8029c729fd3b 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3A-A9IS-10A-01D-A399-01 bce85f20-5afc-4028-926f-80e15aac1e51 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3A-A9J0-10A-01D-A40V-01 b70a94f4-4adb-4019-846e-0b0ae25bacc9 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3B-A9HJ-10A-01D-A389-01 acfe59b8-3b48-4b9e-b0d3-4bf712cf8a6e 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3B-A9HL-10A-01D-A389-01 9103a7d8-58d5-402d-ade1-fa43daded300 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3B-A9HO-10A-01D-A389-01 db2d0816-8a79-4f9a-9a4e-d7972f0671c4 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3B-A9HV-10A-01D-A38Y-01 ba436fd8-ebef-4134-887b-e39943191f87 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3B-A9I3-10A-01D-A38Y-01 2f9d8506-f2ff-400c-ac48-2c1827518916 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3G-AB0Q-11A-21D-A425-01 76d640e5-febb-4713-9405-2ee88b5913ca 09/28/2015 THYM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-3M-AB46-01A-11R-A414-31 ffa0dfbd-83fa-4e47-b448-a7d922ca4e4a 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-3U-A98F-10A-01D-A39T-01 62ab53e4-1f4f-4434-a1e7-761541ed5279 09/28/2015 MESO Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-41-2575-10A-01D-0911-01 e908ada6-3d96-4857-ae88-930cc6831f0f 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-41-4097-10A-01D-1224-01 9a8f26cb-589e-4910-b8b6-6ea1111a98f3 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-42-2590-10A-01D-1043-01 b3a9cabe-f7a2-41c1-a1c7-d6be1b7ccc79 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-43-8118-10A-01D-2391-01 56df977c-01a5-4106-91d1-42d0ca2583ea 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-44-2657-11A-01D-1549-01 ebed264c-be85-40a1-8907-1817acac0807 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-44-2659-01A-01D-1549-01 681399c0-07d4-4283-87df-45b902c31e8b 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-44-2659-11A-01D-1549-01 ab81b2d0-d6a5-4177-8105-14b6ba0d2edc 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-44-2661-01A-01D-1549-01 109dcb62-b398-438a-b6c9-6472a2889a00 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-44-3919-10A-01D-1450-01 48e82aa6-627a-41ca-9bd8-ed1e90ba4747 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-44-6779-10A-01D-1854-01 1088972b-5720-4aa5-aef9-bd56ab1f0588 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-44-7670-11A-01D-2062-01 6ea2e2d4-3629-4a10-8a9c-f144d66d9e0d 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-46-3766-10A-01D-0978-01 bbb22ffa-c374-44f3-b6eb-168d07f2e74f 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-50-5930-11A-01D-1752-01 3e76abf2-7651-4ae0-8a6b-914bffa545bf 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-50-5946-10A-01D-1752-01 10fec323-6608-4afb-969c-0842d0622a67 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-51-6867-01A-11D-2041-01 54d737d2-27bb-4d04-88ab-44037b9b6167 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-55-6984-11A-01D-1943-01 292f68fd-f1c5-4064-8b5d-c82174a32839 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-55-7227-01A-11D-2035-01 e068fc25-2987-4e5a-bac6-b9445aeb7ab4 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-55-7283-11A-01D-2035-01 b65e7a38-acf9-43ba-96cc-36df46add2a7 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-55-8087-11A-01D-2237-01 b46823ac-a608-417c-b05f-353066fab830 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-55-8302-10A-01D-2322-01 30276748-6efb-45c4-93a4-181f982ed89e 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-56-8504-10A-01D-2391-01 5eacaa09-b67b-4615-ad93-05ff330843be 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-56-8622-10A-01D-2391-01 45e9c80f-34d6-41e2-9a1c-75b284cfbbf8 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-56-8623-10A-01D-2391-01 a3219216-997d-44a5-be11-0672c8b3ed04 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-56-8624-10A-01D-2391-01 de873a2a-c354-41d5-a761-f0c32d9b4e2b 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-56-8625-10A-01D-2391-01 632be07a-81ec-495b-9b78-e5858709302b 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-56-8628-10A-01D-2391-01 8bd38fd6-214e-48ff-b3bc-e2a04fce9e67 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-56-8629-10A-01D-2391-01 e9fad1d5-2018-4858-92d7-22a5b4892f75 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-57-1586-01A-02R-1567-13 2dcac69e-7167-4979-8327-be74d2c1202b 07/20/2012 OV Center QC failed RNA-seq:HIGH MITOCHONDRIAL CONTENT
TCGA-57-1586-01A-02R-1567-13 2dcac69e-7167-4979-8327-be74d2c1202b 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-5P-A9KF-01A-11D-A42I-01 4a594a02-a97b-4b85-9a18-1005bc3b8340 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-5P-A9KF-01A-11D-A42J-10 1dc8fe07-a1c3-4813-b1b4-c8b5433cb812 11/24/2015 KIRP Center QC failed This sample showed an elevated contamination level when comparing the exome data with the SNP array data.
TCGA-60-2710-01A-01D-0844-01 064f4105-24d7-4c2b-b483-d0914626d794 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-60-2710-11A-01D-0844-01 95b5c614-1551-44dc-be49-8ad81a47606a 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-60-2720-01A-01D-0844-01 cdae666f-4f66-40a4-b294-521e4ccd9d87 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-60-2721-11A-01D-0844-01 e578952f-bd4d-4552-a1a8-ea1c25ef31ff 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-61-1721-01A-01D-0650-06 b474af7a-aa6d-4efc-b805-ee70f89b9cc4 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.B_Allele_Freq.txt'.
TCGA-61-1721-01A-01D-0650-06 b474af7a-aa6d-4efc-b805-ee70f89b9cc4 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Genotypes.txt'.
TCGA-61-1721-01A-01D-0650-06 b474af7a-aa6d-4efc-b805-ee70f89b9cc4 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Unpaired_LogR.txt'.
TCGA-61-1721-11A-01D-0650-06 294d386a-fc2f-4b6d-927a-a25080c01b2e 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.B_Allele_Freq.txt'.
TCGA-61-1721-11A-01D-0650-06 294d386a-fc2f-4b6d-927a-a25080c01b2e 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Genotypes.txt'.
TCGA-61-1721-11A-01D-0650-06 294d386a-fc2f-4b6d-927a-a25080c01b2e 09/28/2012 OV Item flagged DNU SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Normal_LogR.txt'.
TCGA-61-1901-11A-01D-0577-01 157b9cab-451c-4f38-9146-887af1cb4986 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-61-1911-01A-01R-1567-13 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 07/20/2012 OV Center QC failed RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO
TCGA-61-1911-01A-01R-1567-13 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 12/11/2015 OV Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-61-1916-01A-01D-0803-01 0dc4136c-c8d3-43b3-b3c8-04fdba203eeb 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-61-1919-11A-01D-0648-01 11900447-9891-4939-8255-fab71b98e335 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-61-1998-10A-01D-0663-01 486b4e18-442c-4f31-ac8e-f3681ae8de24 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-61-2008-02A-01D-0803-01 ad02b1ad-5bd1-4b2c-b5f3-03f0b07eb813 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-61-2098-11A-01D-0663-01 bac30e04-07ed-440c-9be1-0d8b2bde14cd 09/28/2015 OV Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-62-A470-10A-01D-A24E-01 054c1231-a4c4-4cbf-b520-70bdf3f2a0bd 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-63-5131-10A-01D-1439-01 e8b08dd7-41c6-4b5b-b774-79211f140dd6 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-63-7022-10A-01D-1943-01 5886cb66-a2cc-4189-b388-9e8502d3cc37 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-63-A5MI-10A-01D-A27M-01 8a4ed7f6-a532-41e2-a653-5a06ce088aae 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-63-A5MR-10A-01D-A27M-01 b97a3686-3bfb-49f3-88f0-38f689027267 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-66-2744-01A-01D-0978-01 3dc9f554-a9ed-4511-889d-21c7cac0ab37 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-66-2758-01A-02D-0844-01 8147490b-7151-40b1-8b5a-029bec434ce0 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-66-2759-01A-01D-0844-01 086cca30-2347-4846-b980-9e143322d5d1 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-69-7979-10A-01D-2183-01 64ff60d9-7f7b-4957-ae6f-bca8385cfcb9 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-71-8520-01A-11D-2389-01 30a8fcf2-85f3-43ae-8d73-3b8489cffbe2 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-76-4928-10A-01D-1479-01 9d45de65-47f2-4482-8915-7f89a0920f96 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-76-4932-01A-01D-1479-01 01ff55d9-4158-4ca6-84b5-54e108dc54d8 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-76-4932-10A-01D-1479-01 be571790-8750-4f1d-95a7-2bad14ea488f 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-76-6657-10A-01D-1842-01 968905ad-2ceb-4d3e-8c7a-57e80450f3e5 09/28/2015 GBM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-77-6842-11A-01D-1943-01 a7f92726-83dd-4fa6-ad47-88aa73613d7e 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-77-6845-10A-01D-1943-01 2a954948-1aef-45ac-9166-d6d60e14a326 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-77-A5FZ-10A-01D-A27M-01 50af9e0a-a581-4151-8538-b0fe31d1084c 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-77-A5GA-10A-01D-A27M-01 80bcd9a8-2a3c-4f2f-ae26-c8b55a09cebe 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-77-A5GH-10A-01D-A27M-01 5fe4fd48-b3c9-4d29-aeca-a96c4ae86b33 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-78-8640-11A-01D-2389-01 a48e989b-fbf5-4ae1-8ecf-07577920bc3c 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-85-8580-10A-01D-2391-01 95c4b103-0bfe-4a97-9a35-962377d19348 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-85-8582-10A-01D-2391-01 9858666e-6711-4e3b-80b7-be731f275d0d 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-85-8584-10A-01D-2391-01 b13ba588-5163-45b2-ab20-4a47e27b13fa 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-85-8664-10A-01D-2391-01 5712d454-10c3-43d0-8245-3ca14d6e3aa0 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-85-8666-10A-01D-2391-01 c1e18a71-a652-49a1-8891-cb384c90dc0d 09/28/2015 LUSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-86-8358-10A-01D-2322-01 d668c3df-b0ab-4d05-a85e-512824c56e3a 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-86-8672-10A-01D-2389-01 440f0a3b-db28-434f-afad-f7e3e21af1cf 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-91-A4BD-10A-01D-A24E-01 bf0e44bc-68b6-4660-8280-4dfc5b1eb297 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-95-8039-10A-01D-2237-01 241517d1-692b-4ab7-ac11-611938d55438 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-97-7547-10A-01D-2035-01 05c86ada-d3f6-4a4d-8e5c-4456d4897485 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A2-A0CY-01A-12D-A036-01 a4454fab-7a3d-41e4-9253-32222e02563f 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A2-A0CZ-01A-11D-A036-01 b223f800-9ce8-420f-bd12-dd6f9dd272a7 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A2-A0EP-10A-01D-A22W-01 380281a3-ae58-4d12-a6e4-8e8bf2305cd0 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A2-A3XX-10A-01D-A238-01 2aeb46d6-cd07-4b64-8a9c-bd9ecca7f08d 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A2-A3XY-10A-01D-A238-01 a4b26272-ce2f-48c2-af54-f57b5e89f06e 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-3323-01A-02D-1322-01 071b1b80-6d68-4b08-99c0-a0692c7cfed8 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-3373-11A-01D-1417-01 3212308a-04c4-4597-80a3-fb48d2d6b5de 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-3374-01A-02D-1322-01 d3b5fdb9-b132-490c-8ab0-495b459a0c38 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-3382-01A-02D-1322-01 33cc9a7a-9cce-433e-99da-be11cfbf0cb3 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-A6NJ-10A-01D-A33B-01 f91d8a78-31c0-4afb-8926-5a6f980f1a62 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-A6NJ-11A-11D-A33B-01 e9160986-2aed-4201-b0d2-6c6573b82199 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-A6NL-11A-11D-A33B-01 e6c9ed02-715c-403e-bb10-2e7d39cb1172 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A3-A8OU-10A-01D-A36Z-01 b25f4e57-2231-4456-9bbf-7da269a57dbe 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A4-8312-10A-01D-2392-01 a1943e4d-6563-4c61-8fc1-ed73af13171a 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A4-A48D-10A-01D-A255-01 4c80b43c-95db-413e-9758-d56f58871a09 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A5-A0G3-01A-11D-A042-01 9a5539d4-bd00-4a7f-9fa1-b17adf7d20a2 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A5-A0GI-10A-01D-A042-01 b9689732-e5c7-44fc-b4b2-06650280f2b8 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-2677-10A-01D-A274-01 45315948-76f1-42ac-bacd-db8b92243d09 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-3808-01A-01D-1018-01 0bd6f5b2-d56a-42ee-93db-b125ad4790d2 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-3809-01A-01D-1018-01 5cd77542-83b1-4744-ba5a-081dc6716fbe 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-3809-11A-01D-1018-01 979be049-3048-43d6-96c8-50988b194a68 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-3810-10A-01D-A274-01 d94172d0-8424-430c-bc0f-e8cc2c2f942f 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-5656-10A-01D-A274-01 2f7ee485-97c1-44ee-93e8-0cbd5632a0a2 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-5659-11A-01D-1649-01 2a11206d-f931-496c-aedb-0a522955d77f 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-6650-10A-01D-A274-01 d2db47d7-e9b2-4691-800f-e4e91cb720d0 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-6780-10A-01D-A274-01 cd904ecf-e7b6-4650-bfc0-d62b0fe4c8f3 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A6-A5ZU-01A-11D-A28G-10 42036508-333e-4063-bdb2-c7b437c25212 11/24/2015 COAD Center QC failed This sample showed an elevated contamination level when comparing the exome data with the SNP array data.
TCGA-A7-A0CH-10A-01D-A012-01 a253cef7-c131-4261-af2a-0a12557d9b9d 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A7-A4SC-01A-12D-A25N-01 df79e6dc-d6b2-4a7d-b155-cbd1aeeb2e69 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A8-A07C-01A-11D-A036-01 a348fec6-0ca5-4cb8-9114-94be66a2e6a9 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-A8-A07S-10B-01D-A037-01 f8a40832-25e9-4849-9ceb-2aceaabf4e73 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3509-01A-01D-1406-01 3d41daa8-5542-4f1c-9dfd-8cac3af874b5 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3531-11A-01D-1550-01 b5bc8828-867d-411c-8eeb-80bee8d1e8e3 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3815-01A-01D-1018-01 ed3dc858-c81a-4a35-97c5-de16aa5c959d 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3861-01A-01D-1018-01 bac6f45a-0c51-4409-a41c-2055f19d3d88 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3862-01A-01D-1018-01 0b48696f-06ab-4146-8fca-4187550a67cb 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3930-10A-01D-1018-01 bcb175be-cc85-4c98-afa1-12c1b4e7ea95 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3939-10A-01D-1018-01 33906b9e-5053-4308-8ee4-9ca334d17cee 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3970-01A-01D-1018-01 2ec89cb0-69e7-4504-876b-641f5937dae8 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-3980-01A-02D-1018-01 4c16ab19-2a49-4ed2-a1ce-f967f1de72c9 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A004-10A-01D-A008-01 ee5ec48d-bbf3-4ea0-b602-db055cb78e44 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00A-10A-01D-A003-01 48964ebf-bd59-4f86-ae1e-d8b7cde091a0 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00D-10A-01D-A003-01 7746d5b4-3ad7-43b9-bbcb-923f3385b0b5 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00E-10A-01D-A003-01 7bea953e-7e34-4156-9942-9cae38f7ae73 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00F-10A-01D-A003-01 9ecd653c-bc39-4661-b9c3-cb8d47a154c0 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00J-10A-01D-A003-01 88cf9565-e3a5-4739-bd5a-a3238aa3f203 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00K-10A-01D-A003-01 10709429-f2d6-4828-8139-8ded64167100 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00L-10A-01D-A003-01 254e33f7-7c84-4f6f-a1c6-61ba2cf3ed10 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00N-10A-01D-A008-01 536052de-f7e3-4a4d-a62f-2a163525f09f 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00O-10A-01D-A008-01 babcbf3f-b531-4dc0-85f6-4bac8b3d7cca 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00Q-10A-01D-A003-01 0e1de241-61c4-4390-84f2-5a7de7bfa900 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00R-10A-01D-A003-01 574529a9-7b45-4ecb-80d2-32d6fe9ad4ee 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00U-10A-01D-A003-01 f86dfa12-428b-4b4c-9d21-84c41084fa47 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00W-10A-01D-A003-01 0437683b-208b-4b44-8897-2a894cdf0291 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A00Z-10A-01D-A003-01 b391c6d6-ea13-4ad4-8f87-9a8767a43808 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A010-10A-01D-A008-01 b3eb5af4-d009-4597-968b-eec5a66aea78 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A017-10A-01D-A008-01 0fc186b4-8a13-4470-b6a9-6dd3ce9f7f10 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A01C-10A-01D-A008-01 b6507e49-51c7-47f6-b6d7-f252578b587d 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A01D-10A-01D-A008-01 66903320-c06d-44ce-8b5b-5cef10cdd10f 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A01F-10A-01D-A003-01 07a1ae1c-6777-4f16-a0d1-176a68cfc81d 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A01G-10A-01D-A003-01 d6bc976e-5838-4bd7-88c1-9ee8868baf71 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A01I-10A-01D-A008-01 67253a26-96f6-4673-8c0d-a31c1237dd3c 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A01K-10A-01D-A008-01 69a107ba-9390-49b0-bf81-0edb15e4e3dd 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A01Q-10A-01D-A003-01 109475ac-4ca7-41a1-ac3e-01d6de2dcfa4 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A024-10A-01D-A008-01 fe6b8e4e-29b6-415f-873a-4b2e2d7298d7 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A029-10A-01D-A008-01 9baef07c-e22e-42eb-83d5-8a186046717f 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A02E-10A-01D-A008-01 b4205748-5dca-4b4f-b449-ce04a68bea0a 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A02F-10A-01D-A008-01 e8c3195d-d9b3-4e47-81ec-81687a01d6e4 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A02H-10A-01D-A008-01 e44f293a-c244-417c-bfd6-a39b9d211ed2 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A02J-10A-01D-A008-01 c1638ace-f30c-4ee8-afa0-580dc14f7caf 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A02K-01A-21D-A080-01 500069b9-de7c-453c-8da2-7cf1794487bc 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A02R-10A-01D-A008-01 497a6406-0ee0-427d-897d-240277b8d59b 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AA-A02W-10A-01D-A008-01 b4fa533f-798e-4332-9b61-409be0bf5aa3 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2802-03A-01D-0756-21 54b5d850-9e9d-4fdd-a8d9-b46993687013 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2802-11A-01D-0756-21 8c3268fa-fbb5-4346-8bfa-35bcaa24e121 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2806-11A-01D-0756-21 1c99b115-0ff5-437b-8e7c-66f353129353 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2833-03A-01D-0756-21 e067d2c2-94c6-4ba4-8bd8-7e4d980a5621 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2833-11A-01D-0756-21 06f9c659-c4d4-4dd8-804c-651a8477a5fc 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2843-03A-01D-0756-21 94e0d8c5-eeb4-4631-ba41-d25201e308e8 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2843-11A-01D-0756-21 6d18844d-12f0-4d40-9699-7be2b5b29e14 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2847-03A-01D-0756-21 baeffe76-6c39-4a44-9ed4-3e9be7b8913a 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2847-11A-01D-0756-21 1b649cf7-983c-4bbe-a9fd-ed09c947c2b4 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2848-11A-01D-0756-21 aae1b993-e099-474a-bb28-7881962e6d96 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2876-03A-01D-0756-21 0ca21221-59d8-4e2c-8fdc-3029467c3852 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2876-11A-01D-0756-21 f7d6a0ee-149d-4faa-99ff-7a8c9843e62f 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2891-03A-01D-0756-21 e5bc8218-ced5-4631-b011-5606f82d93f9 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2891-11A-01D-0756-21 6d217950-e413-4096-975b-b7e477319069 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2909-11A-01D-0756-21 ae8eada1-b1a0-48c7-b431-7943ea91cda7 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2918-03A-01D-0756-21 12772e59-d5a2-49b9-ba41-63cdf7f78b8a 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2979-03A-01D-0756-21 d6907918-080f-4f84-90d0-517c2c72d6b7 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2979-11A-01D-0756-21 5f6056f8-2195-431b-97ba-8348763522fd 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2981-03A-01D-0756-21 9322ee21-1eda-4752-a152-1eadbf6445e1 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AB-2981-11A-01D-0756-21 b4d80502-0794-4da0-9fca-633c870d8a1a 09/28/2015 LAML Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AC-A23H-11A-12D-A160-01 a25bc977-c690-4287-83b4-7d38b7549481 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-3601-10A-01D-0824-01 16b7563c-f640-4f40-ae12-b45ed0da0529 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-3605-10A-01D-0824-01 e3158529-cdd3-41e2-9725-45e9ef68a4f8 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-3611-10A-01D-0824-01 832d48e1-db02-4898-9099-7860cdf251d0 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-3909-10A-01D-1428-01 48690b73-4301-4fbe-a13c-3ab795dd58a6 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A002-10A-01D-A003-01 76982ad3-d40d-4189-a466-472532da6cc9 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A008-10A-01D-A003-01 2b61b856-b988-43ca-8dc5-9f97600118ec 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A00C-10A-01D-A003-01 c77c6d43-653d-4f3f-b828-1cc7cfbdf8af 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A00H-10A-01D-A008-01 3da0288f-585e-43cb-919b-ad6d32e714fc 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A00Y-10A-01D-A003-01 3c44f0da-5ca6-42f9-8481-7b5f3b5325f8 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A011-10A-01D-A003-01 a3c0551f-a7fc-4bce-9379-53cab5a09368 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A014-10A-01D-A003-01 f833efb6-4a79-4e4c-88d9-b104a3d4588f 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A015-10A-01D-A003-01 004b107a-2239-4060-9bfe-6888509e2dba 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A016-10A-01D-A003-01 2264498c-1bb2-4191-b831-eb01f7531e6d 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A01J-10A-01D-A008-01 7e348d75-f180-44b8-aa32-0dc19ff7e7a2 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A01L-10A-01D-A003-01 2ceeb32d-3dd0-4b5a-877c-b5d8a874f84f 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A01N-10A-01D-A008-01 d8ec400b-de1b-4eba-b6b9-59b2937843f8 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A023-10A-01D-A008-01 1a7a5bc6-6e1f-4fc1-8533-8795746f26cf 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A025-10A-01D-A008-01 c898518a-3b0b-4bbf-b2a5-e0b70f844acb 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A026-10A-01D-A008-01 24a21e13-d14a-4349-b611-28c86151371f 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A02G-10A-01D-A008-01 501c4007-9025-4094-9e7b-ed2da60e568b 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A02X-10A-01D-A008-01 8b3f043c-b2c8-44c0-8ea8-dd72f4a72a12 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A032-10A-01D-A008-01 84e80020-058c-4005-9dac-881e3789fa11 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AG-A036-01A-12D-A080-01 a231062a-357c-4103-90d6-e92ab7925466 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AH-6549-01A-11D-1825-01 c8cc88e1-89c7-459a-a181-0dd802a3cf55 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AK-3427-10A-01D-0858-01 05a46231-fe88-4206-a7ef-b0e144be07e6 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AK-3440-10A-01D-1274-01 bd7986e0-aa08-4263-a778-a158aac2b2d2 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AK-3454-10A-01D-1274-01 6c12203f-c754-471c-a6ca-d64fb2a8a916 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AL-3466-01A-02D-1348-01 2f6b3c97-f577-440e-b300-7736f289cb13 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AN-A0G0-01A-11D-A036-01 ab6ead94-e5ae-4bfc-bbe3-8ecac5a98a54 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AN-A0XW-10A-01D-A107-01 a9b81daa-0f0b-450a-b02b-b936bddb95e2 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AO-A12C-01A-11D-A10L-01 2e146555-16fd-4c9a-b907-6c440fcd58fd 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AO-A12E-10A-01D-A10L-01 7addfc42-918e-4719-8122-dab358fda881 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AO-A1KQ-10A-01D-A13N-01 09051907-24cd-49d7-836d-b3612865d4df 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AP-A0LH-10A-01D-A042-01 8aa9e734-3b34-4d52-acc4-ef688785688f 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AP-A1DQ-10A-01D-A134-01 9452e7e3-65f5-4e1e-98f2-a4608b31d838 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AP-A1DV-10A-01D-A134-01 9af72f75-6a24-4e23-8d89-9be7326926b4 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AQ-A04L-10A-01D-A10L-01 841ed49a-1a0f-4d89-a7d3-0cb51a611fa6 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AR-A0TU-01A-31D-A107-01 ebd66787-d03c-41f8-9054-ec39f4d0304f 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AR-A24L-10A-01D-A166-01 97d4b870-753c-4a17-9fb6-22a8c7596881 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AR-A24T-10A-01D-A166-01 5f903bcb-f85c-498c-9ca1-08f3962aded2 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AR-A24U-10A-01D-A166-01 44ef77d9-47b6-410f-b3c0-83524d668b32 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A05S-10A-01D-A00X-01 3496b99e-610b-4237-921e-de2b62486a5b 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A05T-10A-01D-A00X-01 f77ffd48-c623-4848-96e6-34a6612be756 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A05U-10A-01D-A00X-01 b679f8da-5723-44c3-a2eb-e197252635d1 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A05W-10A-01D-A00X-01 49c54b85-feaa-42d4-85b2-d9e6b6cebeef 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A05Y-10A-01D-A00X-01 a09b72f3-0305-428d-80a4-c4b3a67ba3d8 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A060-10A-01D-A00X-01 9ef9ff45-8eff-4943-8057-f2971c331728 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A062-10A-01D-A00X-01 00efa834-8d09-4e96-a58e-a7d8e15952e2 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A063-10A-01D-A00X-01 46ae4ad7-ab47-4fb7-ac99-1da392d52d7d 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A064-10A-01D-A00X-01 acd3155f-145b-49ad-aeec-0b4a56d19e0b 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A06B-10A-01D-A00X-01 90206688-24f5-4623-8a67-f63fd4d18035 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A06F-10A-01D-A00X-01 b1850be6-4f48-4667-ac88-79ec7c2d571f 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AX-A06J-10A-01D-A00X-01 94b3f377-8c3c-4538-9205-07305326f293 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AY-A54L-10A-01D-A28F-01 172d8607-c12c-49bb-a121-4e6b1f43bb51 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-AZ-4684-10A-01D-1406-01 d4059dfa-efa5-49e0-885f-603f8a11d5b7 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B0-5083-01A-02D-1417-01 6db3fd0b-b319-48ed-8d4d-6d9ae34dadee 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B0-5113-11A-01D-1417-01 b6b8f753-f2da-405c-b636-153efaf1ba80 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B0-5117-11A-01D-1417-01 fbe3611c-1591-42fd-aa54-61ad74b93f8d 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B0-5690-11A-01D-1530-01 cea02ffa-488a-44be-9d55-1fd50585a5dc 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B0-5707-01A-11D-1530-01 599642a3-f8b7-46d7-ad1c-f2ab0930b9f3 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B2-4098-01A-02D-1322-01 fae26892-263e-42a9-b3be-ba3613454b0e 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B2-5633-10A-01D-A274-01 1d558008-2211-4d66-ba72-22c3576300b4 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B2-5635-10A-01D-A274-01 a5802cbe-d179-4f36-bd27-d35e469d6735 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B5-A11M-01A-11D-A120-01 8514a373-8fb1-4e43-8c1a-85aac1595cc7 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B5-A11X-01A-11D-A10L-01 f7a41c8c-ec27-43e5-8ed6-0d665dbe7857 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B5-A1MS-10A-01D-A229-01 ee6012a4-f172-486e-bbc7-8c29be323c84 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B5-A5OC-10A-01D-A27O-01 ba839592-6a15-423b-9d3e-2b38233e846d 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B6-A0I6-01A-11D-A036-01 ba92130c-fd4f-492f-b4c8-8420a9d017f9 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B6-A0I8-01A-11D-A036-01 20605d45-0b1d-4c98-a2fe-8ad7e9f81b22 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B6-A0WW-10A-01D-A107-01 288f4d26-f31a-4cd3-a58f-450f12fc3326 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B6-A400-10A-01D-A238-01 7cc620b9-d26d-419f-b9d1-477bbbd7dfde 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B6-A402-10A-01D-A238-01 6d180dab-0ce3-4132-84ba-e6d79a3b945d 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B6-A40B-10A-01D-A238-01 4ca19826-f80d-41c4-8518-26d5f471a285 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B8-5549-10A-01D-1531-01 b2df068a-eda1-493b-8e6c-b4f53f99a473 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-B9-A5W7-10A-01D-A31W-01 9a5283a1-8db2-4722-ae30-8807c5750b66 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BA-5151-10A-01D-1432-01 51952366-13fb-49ae-819d-5657f52de856 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BA-6872-10A-01D-1869-01 6b4bf182-2790-45eb-9e17-634f0edbeb57 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BA-A6DB-10A-01D-A30G-01 9be1cfb7-f08e-4a75-a54c-64f305f3493b 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BB-4225-10A-01D-1432-01 3d88d40a-58b5-46e2-8c90-7af1db2e7e15 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BB-7870-10A-01D-2228-01 6e012a17-605d-4eaf-b1ab-f0d7e06f5e2b 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BG-A0MH-01A-11D-A120-01 6c950711-82b1-4068-ac06-4fe3ac2ef9c9 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BG-A2AD-11A-11D-A16C-01 50ca2de1-3526-40b5-8a79-1a487e99bf4d 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A0B1-01A-12D-A059-01 4e237dc0-b785-4eb0-9948-a946b41dab8f 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A0B8-01A-21D-A059-01 79cc92c6-95f1-4a56-b064-d26a3d38b254 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A0BV-11A-31D-A092-01 77d07509-54de-4bfa-b0cd-6186d85c1d93 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A0DQ-11A-12D-A092-01 0e3a10ef-0f85-4009-920a-e5ff5b526e3b 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A0HF-01A-11D-A059-01 598d5706-eedb-4d5a-9048-4ac324573025 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A0HL-01A-11D-A036-01 53e67b89-52ff-4af2-a20f-378da3c2b9f4 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A0HN-01A-11D-A087-01 4e118657-b2e3-491b-ba2d-e8d16e04be75 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A1FB-11A-33D-A13N-01 73bbcca4-80e7-4a98-bd1a-9d4d22ad5050 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BH-A5J0-10A-01D-A27O-01 ba3c98ef-7752-4d35-9ddd-04352f38b7f8 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BI-A0VS-10A-01D-A10T-01 ecaf7546-69f6-4a67-85f8-84b2f1faabbc 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BJ-A0Z9-10A-01D-A10T-01 67818715-444b-4a3a-b576-fc2f3a0087c5 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BJ-A0ZF-01A-11D-A10T-01 c38b01b2-6bca-4e8e-adfa-666a0b732f68 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BJ-A290-10A-01D-A17S-01 092b9394-ec54-4dcd-a120-5b3f1950a607 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BJ-A45D-11A-11D-A23T-01 5b3bbbaa-89f4-4969-9c6a-091988a358e4 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BK-A0CC-10A-02D-A275-01 0b06d0b5-b390-4eb0-be4d-114cc824d911 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BL-A13J-11A-13D-A10T-01 c71b3462-c2af-433e-9962-3e1a9a718b03 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4345-01A-01D-1283-01 22c4dd32-19bc-4268-a0dd-ca4b9760726a 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4763-11A-01D-1283-01 c5b51cdf-91ee-42a5-a549-23a65314ef30 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4776-11A-01D-1286-01 f36e4712-3e43-43a1-984d-fb1cff60845c 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4960-11A-01D-1331-01 4025a3e8-da62-46b1-9aca-879ef47d4ea1 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4961-11A-01D-1331-01 f1b637ea-8bdb-41b8-9706-0a45701ae8e7 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4971-11A-01D-1331-01 8cabcd7c-59d5-47bd-8df0-b3b71a95b257 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4987-11A-01D-1331-01 bb3c91bd-f3bf-46f1-b254-19391d6c9b74 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-4995-11A-01D-1331-01 4725f494-ad80-48be-b330-5a0a2b8c6ec4 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BP-5201-11A-01D-1423-01 6baed3a4-f18c-4bde-b5c7-8ba86539a3a7 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BQ-5875-11A-01D-1588-01 01f8c3e0-2212-44d7-9e79-0c0e87c3c650 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-4184-11A-01D-1130-01 f3eb81ae-4fc0-40e1-ab56-51086da7bb49 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-4194-11A-01D-1130-01 7be2642e-010b-4003-a152-b8e4bcd78ed4 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-6453-11A-01D-1799-01 9046acce-0767-48c7-b094-ee0a3aea31b9 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-7704-01A-11R-2055-13 3796ed18-1911-4d81-8d69-40bba4542703 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-BR-7704-01A-11R-2055-13 3796ed18-1911-4d81-8d69-40bba4542703 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BR-8077-10A-01D-2338-01 9d9155d0-d3d2-4c48-afbb-bed3c1430946 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8289-10A-01D-2338-01 845595dd-cf82-4598-b845-c8cb79a459b0 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8295-01A-11R-2343-13 9c2721cf-ca2e-4a60-91c1-1f45cb49bf91 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-BR-8295-01A-11R-2343-13 9c2721cf-ca2e-4a60-91c1-1f45cb49bf91 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BR-8295-10A-01D-2338-01 dde98c27-0d5c-4d4b-aab0-f8ff439b2798 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8296-01A-11R-2343-13 0d1267c5-ad37-4942-923f-f38c2b0d3127 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-BR-8296-01A-11R-2343-13 0d1267c5-ad37-4942-923f-f38c2b0d3127 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BR-8296-10A-01D-2338-01 7a1e551b-0a3b-4c05-8ba7-68264e2ff0f9 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8297-10A-01D-2338-01 82dddf9d-e8b5-4b2a-9b4a-e2b846047fe9 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8366-10A-01D-2339-01 266bf4bf-f43b-40d3-8ec4-2f054a254299 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8485-10A-01D-2390-01 5233d33c-af0a-432e-9545-174ff420a1a6 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8487-10A-01D-2390-01 e69f5d60-6d72-4a26-9fe0-19ca09d7a174 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8676-01A-11R-2402-13 f4b00f16-43de-4703-8d7c-4d7e9fca0920 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-BR-8676-01A-11R-2402-13 f4b00f16-43de-4703-8d7c-4d7e9fca0920 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BR-8677-10A-01D-2390-01 f9d14691-cc84-40e3-bd2d-671e4a16e357 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8679-10A-01D-2390-01 df3ef7d8-c2d2-4904-bf41-86892e56ec09 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8687-10A-01D-2390-01 24b4da1f-bd81-431a-9a67-9c3d9d3dd92d 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-8690-01A-11R-2402-13 f8af1ec3-7b69-4fa1-a0f1-5b61ea471b2e 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-BR-8690-01A-11R-2402-13 f8af1ec3-7b69-4fa1-a0f1-5b61ea471b2e 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BR-8690-10A-01D-2390-01 f376c284-00b1-44b3-8f21-11af11ee9b02 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BR-A44U-01A-11R-A36D-31 5d1ed8da-88b6-4a5a-9144-76156df0e255 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BR-A4QL-01A-31R-A251-31 b52a9ebf-2c18-41da-9518-b874d0e4432c 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-BR-A4QL-01A-31R-A251-31 b52a9ebf-2c18-41da-9518-b874d0e4432c 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BR-A4QM-01A-12R-A251-31 762812df-03a7-4e9b-aefc-26cf355c87de 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-BR-A4QM-01A-12R-A251-31 762812df-03a7-4e9b-aefc-26cf355c87de 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-BS-A0TG-10A-01D-A102-01 6839238c-f3d1-443c-a0df-5c2a48bb8eae 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BS-A0U9-10A-01D-A10L-01 0a9e8ba4-6a2e-4a23-93f5-72d17f835314 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BS-A0UA-10A-01D-A120-01 3ba04cfa-b2fc-4252-a54a-da9bcf7667cb 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BS-A0UM-01A-11D-A102-01 210885bc-367c-46b9-97c2-78b4b9ab47e7 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-BT-A20R-11A-11D-A16M-01 390ad3e6-8cdf-453d-855f-6729f6ff7cf8 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C4-A0F1-01A-11D-A10T-01 f09e8ad8-3775-47c7-9e67-4c7f4b01438e 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C4-A0F7-01A-11D-A10T-01 2835ce49-07da-4240-8cd3-400c4fe79b43 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C5-A1ML-10A-01D-A14V-01 b2fa6000-621b-4d6c-a365-a4b31c62eeef 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C5-A1MN-10A-01D-A14V-01 ae3cea81-7420-4338-a967-5526dd667043 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C5-A901-01A-11D-A37M-01 18669945-c816-4819-97be-491d1763f144 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C5-A902-01A-11D-A37M-01 3387f740-d44d-4fdc-81c5-e2cec69f607c 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C5-A905-01A-11D-A37M-01 a449c444-7e8b-4f9a-a879-e7e7104dce92 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-C8-A274-10A-01D-A16C-01 592d8f67-7f0d-4af2-84fa-91af4f00a087 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CC-5259-01A-31D-A20V-01 c39b182d-9cde-4d8a-a75b-251b04970578 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CC-A123-01A-11D-A12Y-01 ac97da22-e85c-41e3-8466-14e287c589d0 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CC-A5UD-10A-01D-A28W-01 c36f293c-ba3f-483a-b776-a223b0093760 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CC-A8HS-10A-01D-A35Y-01 edbf0c8b-6dbe-4023-b370-8010e9bbdc87 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CD-5799-10A-01D-1599-01 ca044457-f735-4a04-95d1-0b1883352a0e 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CD-5813-01A-11D-1599-01 e29cd557-ea94-4a15-b02e-f32e1c2e78cc 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CD-8525-01A-11R-2343-13 21db6663-def9-49c6-9184-4479aad5d6f1 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-CD-8525-01A-11R-2343-13 21db6663-def9-49c6-9184-4479aad5d6f1 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-CD-8527-01A-11R-2343-13 0f16f1f6-a243-451a-a915-1db1f5ceae02 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-CD-8527-01A-11R-2343-13 0f16f1f6-a243-451a-a915-1db1f5ceae02 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-CD-8533-10A-01D-2339-01 a589164d-6b53-4dca-93d9-6e5e54a607a6 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CD-8534-10A-01D-2339-01 645376d8-8ccd-449e-bbe2-f0fbc3512775 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CD-A4MI-10A-01D-A255-01 300def07-9244-4a90-84d2-143a7c55d9e1 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CE-A485-10A-01D-A23T-01 98d8e320-8406-4c14-ae2d-f45e7626647a 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CF-A27C-10A-01D-A16M-01 6a1efa8a-6cda-4117-a053-b09a78bb499c 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CF-A5U8-10A-01D-A288-01 9d7a1949-859f-4736-9b57-a7f736dbcd50 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CH-5745-01A-11D-1574-01 7330705c-bb54-4822-b13e-4be691e114c2 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CH-5762-11A-01D-1574-01 52495bbd-32c3-47a3-9ad2-0f2add41310c 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CH-5766-11A-01D-1574-01 073a164b-f21d-4e90-8883-be57071fba0a 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CH-5794-10A-01D-1575-01 e33c6e51-7555-4800-b713-6728851645f2 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CK-4948-10A-01D-1649-01 680e3cfe-7846-4434-a2fd-51f5878b5dbb 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CK-4952-10A-01D-1717-01 019cddf4-5d07-474f-8346-e48684a0217d 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CK-5914-10A-01D-1649-01 d1f35d46-c6c9-4cff-ad95-e86d88b38b51 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CM-4744-10A-01D-1406-01 f8c82264-38b7-4320-ba74-be2a18b68871 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CM-4750-10A-01D-1406-01 b1d9051f-3014-4366-ad9f-46b05a5f6397 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CM-6165-10A-01D-1649-01 0ac60874-c11b-4203-a903-d93169fa92fe 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CN-4722-10A-01D-1432-01 c531630c-9bf2-44a7-ba1f-2ff2e4204909 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CN-4734-01A-01D-1432-01 55a8df30-8fa0-4cfb-a5af-bdeb9b814e33 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CN-5358-10A-01D-1510-01 8a9f8e1b-1694-4c0b-865a-ac86ec77ce62 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CN-5361-01A-01D-1432-01 28c4fe06-1e8c-48a8-a2e8-591ae7036054 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CN-5364-10A-01D-1432-01 2340a398-e70d-4469-aaa8-11ceec6e8294 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CN-6019-10A-01D-1682-01 607d7516-4db3-4c4a-9519-ac7a1ab22339 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CQ-6219-01A-11D-1910-01 55813592-5672-4f07-b48c-a57077a53e0a 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CQ-6222-01A-11D-1910-01 d2a936e7-9402-4223-89ee-ee19d7d91c43 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CR-6467-10A-01D-1869-01 977a58e1-0fc8-41fa-aece-9693e537bd1b 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CR-7380-10A-01D-2011-01 e7dadea4-f26f-44d8-b04e-ad66ec1d6e51 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CR-7398-10A-01D-2011-01 e9c05c59-f20f-4c2a-9fa5-c8315f9532f5 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CU-A0YR-10A-01D-A10T-01 689564ab-9e69-4b3a-ab0f-98571140b9ea 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CV-6952-11A-01D-1910-01 211b6ce2-e6ff-4ef7-90d4-8ff81f4e03a1 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CV-6954-11A-01D-1910-01 6ddf5f06-b2f3-4a10-a369-29fc4d116ce0 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CV-7423-10A-01D-2077-01 3f296571-1bde-4a91-80a0-ffe04cdbce34 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CV-7440-10A-01D-2128-01 886d6a26-e966-4e48-b647-92e2ca9c2f89 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CW-5590-01A-01D-1530-01 afdd1a31-658f-47f3-b185-9968efefb040 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CW-5590-01A-01D-1534-10 81fcbdd0-9af4-4609-9876-7d764ac49f5d 11/24/2015 KIRC Center QC failed This sample showed an elevated contamination level when comparing the exome data with the SNP array data.
TCGA-CZ-4856-11A-01D-1423-01 4fe9d426-000f-4be1-ad17-a4d6ae0b1f8b 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-CZ-4859-11A-01D-1423-01 c4b3810f-52cb-4d15-9a5b-96d0cf6fa230 09/28/2015 KIRC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-D1-A162-01A-11D-A120-01 913e6210-784b-407f-908f-566b497f4cad 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-D7-8576-10A-01D-2339-01 36202c0f-6b0c-4f38-a5a5-bad580ea76f6 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-D7-A4Z0-10A-01D-A255-01 d2447188-c089-46eb-954c-3d8b1cc0546a 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-D8-A1XD-10A-01D-A14F-01 368a01da-400a-44bb-8e89-c3e39d517526 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-D8-A1Y1-10A-01D-A14J-01 00a42020-55cb-4491-819c-e7a3258887c1 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-D8-A27E-10A-01D-A16C-01 8ff00a87-b2bd-4ff3-9713-bce1386c778c 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-D9-A3Z1-10A-01D-A238-01 90d60df4-3b77-4014-81c1-cbb73d11e1f9 09/28/2015 SKCM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DB-5275-10A-01D-1466-01 ed776561-4136-46bf-867f-3f8bd5f6843f 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DB-A75L-10A-01D-A328-01 e6ef31e1-f09e-42ab-9432-96a8a1d1680e 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DC-6160-10A-01D-1656-01 cfb6b678-fea2-4cb8-9809-9976a4675200 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-A1EI-10A-01D-A12Z-10 449be2f0-75af-4c43-9da8-872ff6f1a4da 11/24/2015 LIHC Center QC failed This sample showed an elevated contamination level when comparing the exome data with the SNP array data.
TCGA-DD-A4NE-01A-11D-A27H-01 91b8f43a-3bd6-40f1-9a10-e30563ada6f8 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-A4NF-10A-01D-A27H-01 d75a7a3a-1769-4ff9-ba1e-545dd78d9768 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-A4NG-01A-11D-A27H-01 a9a9e6d8-c208-4228-a0ff-11c17ca2aeb4 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-A4NG-10A-01D-A27H-01 6c24e75e-7f5d-46f5-b69e-8c39ae735116 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-A4NG-11A-11D-A27H-01 f53062e0-ed2f-4615-82fc-776211d8a1c5 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-A4NI-11A-11D-A27H-01 7de2af3c-4da9-4f58-9604-93e88048b49c 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-A4NK-10A-01D-A28W-01 b2f04420-235b-41db-aef6-d3ba3a08b03b 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-AADD-10A-01D-A40T-01 1d84d770-1752-4636-9ffe-498d01045ab9 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DD-AADE-10A-01D-A40T-01 bc1ae978-2beb-4510-b92b-655f378a40f8 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DE-A0Y3-10A-01D-A10T-01 43343c8a-8c80-4202-9e9f-512f02dd3ecc 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DJ-A13X-10A-01D-A10T-01 08d54062-6339-4dd9-a1f9-13924225cf99 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DJ-A2PU-10A-01D-A19L-01 835c938f-ca06-4ba7-ac03-077671a7a176 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DJ-A3US-10A-01D-A22C-01 fe5a9096-ccad-4cd5-ba29-cf20673ac98b 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DJ-A3UT-10A-01D-A22C-01 edd43522-5c02-40b1-a6fc-10dde51014a9 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A1AA-10A-01D-A13V-01 50a07e65-a159-40f2-8a26-a44b5e69f300 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A1AC-10A-01D-A13V-01 ee17d6be-eb01-4487-921e-9768dd3a6ebc 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A1AD-10A-01D-A13V-01 a9c8d90e-dbdf-44f4-b2c1-e46a942e6ed9 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A1AE-10A-01D-A13V-01 2bf0bd7a-4b96-47f2-a72f-9010662ece46 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A1AF-10A-01D-A13V-01 7486c3e0-7ba6-40fd-a694-6aeb3b5a7cfe 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A1AG-10A-01D-A13V-01 8c76bee4-88f0-46e4-b561-7b39bd408184 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A2I1-10A-01D-A17S-01 f32eb365-5038-4493-be98-0a3085aa962e 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A2I2-10A-01D-A17S-01 8aab07ab-edec-4bef-9f19-c9a863cf20c1 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A2I6-10A-01D-A18E-01 9f9a45d6-28b6-40fc-bdd2-5ebc9157d5d2 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3IK-10A-01D-A219-01 498d049f-342c-4250-9249-d370b02f0e99 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3IM-10A-01D-A20B-01 fe660d7c-2746-4b50-ab93-b2ed99960553 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3IN-10A-01D-A20B-01 04b880f2-2299-4b37-ac12-88a439484b01 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3IS-10A-01D-A219-01 c9a6036a-beb6-496b-94a6-6c7b5c4efd64 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3IT-10A-01D-A20B-01 e77e332a-d639-42c8-8f39-75224680224b 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3IU-10A-01D-A20B-01 d404ec85-f9cf-4fae-865a-4ab7748953f5 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3IV-10A-01D-A219-01 5a9ce01d-b2c3-4950-8d75-ddbddc1caf72 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DK-A3WX-10A-01D-A22Y-01 19ad6a6b-027c-46cb-9d5d-2080b53e04b3 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DM-A282-10A-01D-A16U-01 a971462b-1865-4d60-bff8-92ca18b90413 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DM-A28M-10A-01D-A16U-01 07b6c261-249f-48af-a8fd-5752ff0e7f86 09/28/2015 COAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DR-A0ZL-10A-01D-A10T-01 7a8934bd-a618-43f0-9fe6-006dd7f154aa 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DS-A0VK-10A-01D-A10T-01 77ffb722-f5b2-4f9a-bd3c-313c51a54ca2 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DS-A1OB-01A-11D-A16Y-01 94181794-80b4-4aab-b3c9-37d9d5825a84 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DS-A1OB-10A-01D-A14V-01 04d9d9b8-993a-4dd7-8408-f5a6eed6688d 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DU-6404-10A-01D-1704-01 c3ebdf51-7993-4c69-b3d5-38be928a2d8e 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DU-6406-10A-01D-1704-01 067f4738-7fd4-4223-a272-02e544864845 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DU-A6S3-10A-01D-A328-01 49eb8b36-416b-4ced-a239-6083b721c7b8 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DX-A3LU-10A-01D-A21P-01 72b79f8e-e09c-42c2-9130-0157f4aa5e50 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DX-A8BQ-01A-11D-A37B-01 e3fee38f-e79b-4937-9d40-44a53adaa2a1 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DX-A8BQ-10A-01D-A37E-01 c1438e80-8be1-4007-ba11-4d1624f25317 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DX-A8BS-11A-13D-A37E-01 33c2c1e6-ad2b-4494-a736-e7c50129a2ca 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-DZ-6134-11A-01D-1959-01 0efeabbf-5421-4672-a20d-01ee25fbb398 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E1-A7YE-10A-01D-A349-01 2885a5e5-8781-4a13-9ae2-ce255f313529 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E1-A7YQ-10A-01D-A34L-01 7d12e51d-f57e-41b5-a3b9-e70366d049b3 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E1-A7Z3-10A-01D-A34L-01 09937b0e-adff-4516-972e-ddd2ababb12c 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A106-01A-11D-A10L-01 f34658c8-7428-4139-af10-c0040c168a02 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A10B-10A-01D-A10L-01 92f648fb-617c-4976-be6e-6e408f6e666e 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A10E-10A-01D-A10L-01 6b536a43-8c9c-4c22-ae9f-3bd64b13fdb1 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A14W-10A-01D-A12A-01 45b6aee4-7178-47ae-9cb4-22a434f6e943 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A15J-10A-01D-A12N-01 00fceb8f-c88b-48d7-994c-8a4a9100f8e4 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A1AZ-10A-01D-A12N-01 c1cfdf6c-d30b-49c8-9875-d39d65e925b5 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A1B5-11A-23D-A12N-01 153321cb-e495-42f6-9c65-a64a33c068b2 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A1BC-11A-32D-A12N-01 8cdf4d2a-4c68-431e-af7d-b2adba3cb6d9 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E2-A572-01A-13D-A31T-01 bdeb88bb-5ce8-4221-988e-1386605e693f 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E7-A3X6-10A-01D-A22Y-01 3c800341-4e81-41a0-9bcd-f300991a0548 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E7-A8O8-01A-11D-A363-01 a063b08c-7c1c-46ed-b360-feaa973f78eb 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E8-A436-10A-01D-A23T-01 f240c64a-f771-4ccf-a72e-2240842a9d29 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-E9-A1N6-10A-01D-A141-01 6255148d-b5ba-4987-99bb-7d3533409e73 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EA-A1QT-10A-01D-A14V-01 02e7535d-7cf6-4584-ac65-7d9afd386279 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EA-A3HU-01A-11D-A20T-01 fb8d3a71-3873-41fe-97ef-58a318ea8801 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ED-A66Y-10A-01D-A30U-01 42a1f59c-fae0-4033-bf2c-3912b8afd73c 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EE-A20C-10A-01D-A195-01 d6b249bf-7050-499f-b868-375d06af4025 09/28/2015 SKCM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EE-A2GN-10A-01D-A195-01 174c1ea7-0e0e-41b0-80fb-07bd2abfb116 09/28/2015 SKCM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EE-A3AA-10A-01D-A195-01 7f0affac-1f04-434b-9087-bd3af9aafb79 09/28/2015 SKCM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EJ-A46F-10A-01D-A259-01 54e63e15-3261-48f6-b9b3-c5b4464c1edd 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EK-A2H1-10A-01D-A17U-01 eaa279e9-dc0b-4ff5-b204-6e61bf3e4fcc 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EK-A2IR-01A-11D-A17U-01 24bae48c-27f8-4331-b473-d791a2470ef4 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EK-A2RM-10A-01D-A18H-01 d704d4d6-3184-41ed-b6b9-91dfe3af5dc4 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EM-A1CS-10A-01D-A13V-01 9ae562c3-ffa7-474a-afed-88e658d00c71 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EM-A1CV-11A-11D-A13V-01 55f9422b-cf2f-4b0d-8c54-379b5aadb667 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EM-A22Q-10A-01D-A17S-01 ac5f9d4e-9d82-40ab-a696-5a8c60082415 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EM-A2CR-01A-11D-A17S-01 be0f3b41-6928-44d7-b5fb-94ba01489a5c 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EM-A2CR-10A-01D-A17S-01 582d2269-59b8-4afc-9573-4b2822ca36f5 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EM-A2CU-10A-01D-A17S-01 66754a0e-ee32-43b5-b52d-2db24892b946 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EQ-8122-11A-01D-2338-01 7a2bfc62-f324-40c0-9929-6556e979e2a1 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ER-A2NH-10A-01D-A195-01 0c5f432b-1ef9-4856-80a7-93b67a97d76f 09/28/2015 SKCM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ET-A40P-10A-01D-A23J-01 decb68f7-ae83-4f7d-b62f-9b348b41f466 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EW-A1OW-10A-01D-A141-01 d50f04b2-c841-4a9e-b1ea-67058dda75fb 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EW-A1PF-10A-01D-A141-01 4597d3d3-fb0f-4aee-a398-2e02a1e03e2d 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EX-A1H6-10A-01D-A22W-01 b8e9b4b3-60d0-4a83-b5aa-82c4d63d2568 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EX-A449-10A-01D-A242-01 4de9cc7d-9af5-400b-8ef7-9cf348c61ae7 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-EY-A547-10A-01D-A27O-01 2abce41f-2631-467d-a7d1-20c43939570e 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-F1-A448-10A-01D-A24E-01 361c91e2-21cf-49b4-aa05-416db1fdf83b 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-F5-6811-10A-01D-1825-01 b3345b36-47dc-4390-8f2a-ee286d0ddc7d 09/28/2015 READ Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-F7-A50I-10A-01D-A28T-01 3aef2dcb-6b02-44f3-9d54-729793d0e7d7 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-F7-A50J-10A-01D-A28T-01 37da77ac-e661-49bf-a589-9e7067c69faf 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FA-A4XK-10A-01D-A31W-01 765aca57-97d6-401a-ae6e-8670c753eb0a 09/28/2015 DLBC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FB-A4P6-01A-12D-A26H-01 50b2c72a-d64f-4cc7-a702-28892f5c5297 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FD-A3SL-10A-01D-A22Y-01 79ad2fa2-636d-4a24-a7f8-c6a0edcdf791 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FD-A3SQ-10A-01D-A22Y-01 b29112cf-4bd5-471b-8e70-97868d72da2b 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FD-A43P-10A-01D-A23T-01 829b9193-6600-4dff-ab98-2a5c641f31f2 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FD-A5BY-10A-01D-A288-01 a0f84d20-6156-46d4-84ca-daa08083d430 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FD-A5C1-10A-01D-A288-01 93504301-ecad-44f0-b08a-02aa0ddf18aa 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FE-A22Z-10A-01D-A16M-01 7fcc981e-c3ef-4280-8eeb-abd76adc3900 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FE-A238-10A-01D-A16M-01 0a6bd409-11fb-42f9-bd6e-bcb94a1c0ac5 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FG-7637-01A-11D-2085-01 ab8d414d-1563-4d06-97a3-0b509d8d711f 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FI-A2D4-10A-01D-A17C-01 c8b054be-bd1d-414f-85d9-4d4c463014aa 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FJ-A3Z7-10A-01D-A23J-01 828c1007-bb28-4401-8856-8ade9563de08 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FL-A1YT-11A-12D-A17C-01 edd1d174-bd38-4117-8d45-3de9e900853c 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FP-A4BE-01A-12D-A24C-01 24e20c8a-d4c6-4c8a-91e7-b3b98cbab616 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FU-A3YQ-10A-01D-A22W-01 e3324602-7ad3-4e48-bfb8-297e4fc0cbe7 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FW-A3R5-11A-11D-A238-01 d568624c-3a50-405b-86f7-5e0a6a2e7791 09/28/2015 SKCM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-FY-A3NP-01A-11D-A219-01 137a7d24-05c7-439e-9f86-ea2174543642 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G2-A2EC-01A-11D-A17S-01 aab946e8-b400-4a47-be23-77b90d99b52a 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G3-A25X-11A-11D-A16U-01 c1c987cb-225a-4c9f-9770-cc98c109d90d 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G3-A5SJ-10A-01D-A27H-01 09704da5-52e0-419f-a8ac-d069bebb225b 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G3-A5SK-01A-11D-A27H-01 0f362c4b-e706-4662-9664-ec6a9cdc3de0 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G3-A5SK-10A-01D-A27H-01 76c77809-0ae0-4f85-8653-5a1e90acfa88 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G3-A5SL-10A-01D-A27H-01 4a787712-7779-4af0-a9fd-98fd5a430ecf 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G3-A6UC-10A-01D-A33B-01 49bf0df8-ba7c-4757-a1d7-57719556d824 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G9-7519-10A-01D-2259-01 b049cc1d-6853-414f-83ef-9095cea51eea 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-G9-A9S4-01A-11D-A41J-01 ce3304cd-70f6-4d6d-a4c1-f68a273f2cbf 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GC-A3RC-10B-01D-A22Y-01 ffb68b69-506e-4efa-870e-8fb6ff963778 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GE-A2C6-11A-11D-A16M-01 ce754acd-d58a-4406-b23d-95db0766e26f 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GJ-A9DB-10A-01D-A36Z-01 e7b7cb82-1867-4e96-b6dd-d41fcea1bae5 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GL-A59T-11A-11D-A28F-01 b54e169f-0da0-4e5a-9a6e-ab23ffd8fe11 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GR-A4D5-10A-01D-A31W-01 53c9fced-c93e-4aba-8db4-463baf4bd60d 09/28/2015 DLBC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GU-A42Q-10A-01D-A23T-01 ad54389a-c08c-451f-8be3-4a1103a743da 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GU-A42R-10A-01D-A23J-01 adff0322-9ca3-4642-a80d-4a6917b54f77 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GU-A766-10A-01D-A328-01 d0c44211-d0c9-4f91-a6be-5013d15c85ed 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-GV-A3QK-10A-01D-A23J-01 bf3ffd47-2e25-4fdf-9c61-a47c25e756cb 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-H2-A2K9-10A-01D-A17S-01 a2a29d7e-dcdb-42e1-adec-3e5b1a3ab309 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-H4-A2HQ-10A-01D-A17S-01 de66fba5-fc81-4dcf-ac12-625b3e7867c2 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-H6-A45N-10A-01D-A26H-01 b8a75244-3ad1-4751-8390-c0290cb4c194 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HB-A43Z-10A-01D-A24M-01 4e5c46c2-9ecf-4551-8700-d36e77126e59 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7077-10A-01D-1959-01 4f9dc3e3-c67b-4482-a77d-24fc45029056 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7736-10A-01D-2113-01 56cd3153-4ddc-4d87-b5c6-28d307e6fd1f 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7738-10A-01D-2113-01 fae70ce1-c3aa-4274-8e83-cf11ecfe74a5 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7740-10A-01D-2113-01 e23eab45-b222-469d-8674-924e978eeb0a 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7742-10A-01D-2113-01 6ee37a09-2204-4107-bd98-62145d59afa3 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7744-10A-01D-2113-01 d0a6fe81-8148-447a-940b-11672275c444 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7745-10A-01D-2113-01 29804ac3-7684-4f7f-bb90-a7f2c4c445e7 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7747-10A-01D-2113-01 6ec0ac20-d8d6-48f0-8348-b8d740fcfea0 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7748-10A-01D-2113-01 8f30419b-60b1-4821-98a3-bd8f2d31fd43 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7749-10A-01D-2113-01 1d01c6ec-d5f3-4314-9e66-3b1a13bef916 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7750-10A-01D-2113-01 4b9f0771-9f25-41a3-b152-8499e3e84e75 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HC-7752-10A-01D-2113-01 96e22698-6f16-4bef-aba9-c42689a54555 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HD-8224-10A-01D-2390-01 a080fa57-447a-4c07-9eab-f1d8dab37b43 09/28/2015 HNSC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HJ-7597-01A-21R-2203-13 21403bdb-d56b-4b59-af62-fd97528b0051 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-HJ-7597-01A-21R-2203-13 21403bdb-d56b-4b59-af62-fd97528b0051 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-HP-A5N0-10A-01D-A28W-01 68757a4d-979f-4638-8b26-9aec5f4373a8 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HT-7857-10A-01D-2392-01 2ade2d3a-a80f-4a69-b6dd-dae1834aaba3 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HT-7882-10A-01D-2392-01 d2eb31fe-a2b7-4747-8607-9b8cf45c7c4c 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HT-8010-10A-01D-2392-01 a1a32f83-ea59-4b4c-9ed6-a8c304472db1 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HT-8113-10A-01D-2392-01 ba151f8f-22d5-4156-85d7-5d9cb6af7b1e 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HT-8558-01A-21D-2391-01 e9215cfd-3788-4a31-a997-d00835873110 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HT-8558-10A-01D-2392-01 8dbb422a-7ceb-4a0a-a50f-33a13b2772a5 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HT-A74L-10A-01D-A328-01 d07a5f1d-6b05-43f3-9025-382c52c6cf39 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HU-8243-01A-11R-2343-13 ace3edd6-14a9-42cc-84f3-6127237f2913 12/11/2015 STAD Item flagged DNU QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result.
TCGA-HU-8243-01A-11R-2343-13 ace3edd6-14a9-42cc-84f3-6127237f2913 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-HU-8243-11A-01D-2338-01 6e5789d7-4988-457a-86eb-e618c7ab06eb 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HU-8602-10A-01D-2390-01 f2746914-a04d-4cf3-92e9-27a646687686 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HU-A4G3-10A-01D-A24E-01 64eb5ba7-caee-41bb-ba60-3bff0e16885d 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HU-A4GD-01A-11R-A36D-31 beb0290c-4c9a-4092-9dc3-cbff2f549b18 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-HU-A4GD-10A-01D-A255-01 dd84bb47-9510-4fd5-94e8-3c040b94e1d1 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HU-A4GN-10A-01D-A255-01 dbd34591-cd21-4238-b2ee-1606eb794565 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HU-A4H3-10A-01D-A255-01 06855da0-4d3c-4ad3-aaf8-1090ddf83894 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-HV-A5A5-10A-01D-A26H-01 b69b37b5-1ca9-4fce-bc58-3d063f0b0335 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-IB-A5SP-10A-01D-A32M-01 e18b790f-e140-4db5-a430-2992dd2bd3e0 09/28/2015 PAAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-IG-A3YC-10A-01D-A246-01 d7b6d3c1-ed72-4c93-94ac-682da92b1742 09/28/2015 ESCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-IG-A4QS-01A-11R-A260-31 8f13389e-3d3b-423f-8a78-0eb9c2373d06 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IG-A4QT-01A-21R-A260-31 47670c44-e944-4cbf-b9e6-e1e189666c44 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IG-A5B8-01A-11R-A28J-31 e336a116-9848-4632-b3b2-2e600f06a7c4 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IG-A6QS-01A-12R-A336-31 d4dc886f-538b-436c-9c8a-3c2728e9ef3f 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IN-8462-10A-01D-2339-01 f5c8f819-75a3-4b64-b056-30c7c4a34afb 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-IN-A6RJ-01A-21R-A33Y-31 2211f388-87e7-478f-a4e5-e6237b152b82 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IN-A6RN-01A-12R-A33Y-31 f6589f0a-4b2c-4931-8915-9d71ce834bb3 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IN-A7NR-01A-11R-A354-31 f34fb02c-fe1d-4f3d-a57c-4413dd6b524c 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IN-A7NT-01A-21R-A354-31 48105f07-87e2-4d36-9f1e-9905d041d1be 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IN-A7NU-01A-22R-A354-31 d52b9b70-e7ee-4474-857a-eb40c10d1746 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-IR-A3LH-10A-01D-A20T-01 8e4e2969-89e6-4308-b98d-0dd478e13577 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-IS-A3KA-10A-01D-A21P-01 c3e6fded-eb62-4607-9fb2-1b75c4f4a335 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-IZ-8196-10A-01D-2392-01 1fc68ac8-b099-4e56-9afc-bdd89944cb64 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-J2-8194-10A-01D-2237-01 5241bfe9-e1fc-4ac5-9fc2-52d7c7828f50 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-J8-A3O1-10A-01D-A219-01 216b9b5b-c945-47d5-a503-f045df92121f 09/28/2015 THCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-K1-A6RT-10A-01D-A33G-01 d629e603-b931-4afd-986d-4867901ee84a 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-K4-A3WU-10A-01D-A23J-01 a6c66bb2-6b72-409c-8c2c-5526e2b6716c 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-K4-A3WV-10A-01D-A22Y-01 5b0aaa2f-eac1-46f5-85d1-9d7a401a915d 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-K6-A3WQ-10A-01D-A229-01 91810ee8-6e88-49c8-a451-57d3b8348e9e 09/28/2015 UCEC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-KB-A93G-01A-11R-A39F-13 912d64d6-406b-431f-9141-0504ad9cba65 06/18/2015 STAD Item flagged DNU Sample identity uncertain
TCGA-KB-A93H-01A-11R-A39E-31 2b1e486f-03f8-4c35-8897-034faefbd086 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-KB-A93H-01A-11R-A39F-13 37aa99a2-c867-4409-bf14-5bc35f61cce1 06/18/2015 STAD Item flagged DNU Sample identity uncertain
TCGA-KC-A7F5-01A-11D-A33S-01 f3056764-ed46-4890-b232-3c3ad5e6ea08 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-KC-A7F5-10A-01D-A33V-01 f38d9d96-c2dc-47ae-9321-68e90122f4ed 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-KQ-A41N-10D-01D-A338-01 cdc1555c-1559-44bb-aa3e-06c5d328ae27 09/28/2015 BLCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-KV-A6GE-10A-01D-A31W-01 28dd4edf-4a4e-4426-928e-9a763a9d35f9 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-L5-A43C-11A-11R-A24K-31 cdcfe8e4-527c-4c6a-8f3a-6679a0441bdb 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-L5-A43M-11A-11D-A246-01 93ba64ea-ad11-4c56-aecb-33fe4c454997 09/28/2015 ESCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-L5-A4OJ-11A-12R-A260-31 be430dee-ad40-4e96-883f-20eaadfa7e9e 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-L5-A4OR-11A-11R-A260-31 27645d9b-50ee-429f-8cd1-d6ba02dae646 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-L5-A4OU-01A-11R-A28J-31 8e15f178-5503-40ed-9594-33c5a04d2f26 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-LN-A49Y-01A-11R-A260-31 66dde567-906c-4da0-9d52-1063db4122ec 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-LN-A7HX-10A-01D-A33G-01 ab20c3c0-9883-428b-8451-87e2e27eb800 09/28/2015 ESCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-LN-A8I0-01A-11R-A36D-31 20de8b59-fe73-4e57-97c1-b951896b0c29 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-LN-A8I1-01A-11R-A36D-31 a7822cf2-fedc-4f01-a628-c67d8b7d0e85 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-LN-A9FO-01A-11R-A38D-31 027af223-8a23-46c0-a4b7-687cdfacd606 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-N5-A4R8-01A-11D-A28Q-01 20deb490-e4b2-4731-b15b-d0d1213790ba 09/28/2015 UCS Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-N5-A4RS-10A-01D-A28T-01 f86ff638-b90a-4bf8-ab5c-829d8bd4ac54 09/28/2015 UCS Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-N7-A4Y0-01A-12R-A28Z-13 30c70c74-4287-45fb-b76f-921e5ff67679 12/11/2013 UCS Center QC failed miRNA-seq: LOW miRNA CONTENT
TCGA-N7-A4Y0-01A-12R-A28Z-13 30c70c74-4287-45fb-b76f-921e5ff67679 12/11/2015 UCS Item Flagged Low Quality QC Warning: LOW miRNA CONTENT. miRNA-seq based expression data should be used with caution.
TCGA-NF-A4WX-10A-01D-A28T-01 598e9542-f165-44d0-9f6c-cdd6048b98d9 09/28/2015 UCS Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-OL-A5DA-10A-01D-A27O-01 d771d932-35ce-4ae1-b467-a466fdf9bac5 09/28/2015 BRCA Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-OR-A5LH-10A-01D-A29K-01 a45534d5-372c-459f-8a98-ecc80aa74201 09/28/2015 ACC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-OR-A5LO-10A-01D-A29K-01 82cf25b0-64d0-43a2-bfd4-509a140590f5 09/28/2015 ACC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-P5-A5F0-10A-01D-A288-01 9c985234-5aaf-4866-9ef9-3f82443d6be2 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-P7-A5NX-01A-11D-A35C-01 9ffea685-252a-4307-89a4-105a45433c36 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-PT-A8TR-01A-11D-A37B-01 927b221d-3897-419f-a4e9-43490b8ebe73 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A6GZ-05A-11D-A35C-01 f94012ec-9b94-438e-a30f-e896d3024a31 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A6H4-01A-11D-A35C-01 91e4e4cc-c5d9-40b8-aa58-99d56e1bdc23 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A6ZZ-01A-11D-A35C-01 7fe6dad7-b282-42c6-b99b-80fe5c96e41f 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A703-01A-11D-A35C-01 cb92df14-8fe8-43d6-8cc2-5fe6520d3949 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A705-01A-11D-A35C-01 a8a6cbb7-17c7-4b08-bcef-a3cba25d6a30 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A706-10A-01D-A35A-01 7a826e8d-e456-4dfb-86de-60c6679691c1 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A707-01A-11D-A35C-01 7e3dbf5a-dfcc-4060-84c5-6a01e45c56b4 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A708-01A-11D-A35C-01 a576c1ae-b8c6-4279-ab67-08998890dceb 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70A-01A-11D-A35C-01 31d8f833-95d1-4f75-9cb9-54f43db78b11 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70H-10A-01D-A35A-01 ab50f38c-2e7d-4d75-a216-27aeaa4d9305 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70M-01A-11D-A35C-01 7e87623b-efc5-4f37-8c6a-91aa645c3bfb 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70O-01A-11D-A35C-01 8cc12363-4c62-4c48-8afe-fd445ca324f0 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70Q-01A-13D-A35C-01 66437cd2-bf3b-4ac3-9546-7673bc1cddbb 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70T-01A-11D-A35C-01 76a9a6ce-e189-4a50-9833-99701eef2602 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70U-01A-11D-A35C-01 e5cf24d4-46ac-498e-a028-f1ce073968a4 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-QR-A70V-01A-11D-A35C-01 bfad9a33-c9da-4476-996f-e0fdbcd3a371 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-R6-A6DN-01B-11R-A31P-31 4091639e-e22e-4731-8d2f-634f46472ae6 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-R6-A6L6-01B-11R-A336-31 b72ceca3-60d5-4e2f-b5f4-a021eef6d240 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-RA-A741-10B-01D-A33N-01 51809084-d5c0-4b4f-9485-0b4f3be9d949 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-RD-A7BS-01A-11R-A32D-31 3268d287-7b2f-4a81-8399-10a77e4367d7 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-RD-A7C1-01A-11R-A32D-31 dce8a7c9-5d7d-454d-aa9a-949ae0754b34 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-RD-A8N5-10A-01D-A361-01 4c9ac512-5ad1-4795-804e-f1639a28944e 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-RD-A8NB-10A-01D-A399-01 a94f40b2-3d43-428b-b3dd-364c9a43bff0 09/28/2015 STAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S2-AA1A-10A-01D-A399-01 a54bc8aa-ccf0-49d1-8b1f-83740958070e 09/28/2015 LUAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A6TW-10A-01D-A328-01 f0a10ad7-76f0-4fbb-93df-1ccebfdfde16 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A6TZ-10A-01D-A328-01 10f0f084-5ab0-4c7d-ad6d-8b96375712f8 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A6U1-10A-01D-A33V-01 bc9910ee-ae9c-4922-aca8-d925e7010eef 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A6WD-10A-01D-A33V-01 573a3a19-c7fd-4e2b-8a62-3aaccd8d6e54 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A6WI-10A-01D-A33V-01 0cfe3e85-3c43-4f7d-b694-d3a3f7e10ab6 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A7R2-10A-01D-A34L-01 2e75f302-43e4-4387-89b2-170a2d5057b8 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A7R3-10A-01D-A34L-01 ca8d4e4f-577a-4c78-b5fe-eb075ef082c0 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-S9-A7R8-10A-01D-A34L-01 3582023a-af47-4a0d-af0c-504e13ee4f7a 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-SC-A6LM-10A-01D-A34B-01 ff562cd1-f499-471f-a625-dab66966feee 09/28/2015 MESO Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-SP-A6QH-01A-21D-A35H-01 802a8772-f3a6-4101-bc87-70a5accd723f 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-SR-A6MR-01A-11D-A35H-01 fd5dd695-a33e-46fb-84d5-ed494b94912c 09/28/2015 PCPG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-SW-A7EB-01A-11R-A354-31 459fb55c-3922-4adf-97fb-26ccf298bc45 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-SX-A71W-01A-12D-A34Y-01 55e35257-e43f-4c5a-84c1-76e4de4c2981 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-TM-A84J-10A-01D-A366-01 bc2e9b02-9236-4bad-9c44-f3f5851ff8da 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-TM-A84Q-10A-01D-A366-01 f39f3f0c-d6fe-4ca7-84c4-837b4c049328 09/28/2015 LGG Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-V5-A7RE-11A-11R-A354-31 1f0a6ab7-ec79-4f8e-82ca-8d4b91613b6b 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-VQ-A8DV-01A-12R-A36D-31 ad25f0c1-833a-48f5-8835-be6a288381aa 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-VQ-A8PH-01A-12R-A414-31 d841b3a0-831e-46bf-bab7-529b23f1e4f0 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-VR-A8EZ-01A-11R-A36D-31 72c0caa7-6424-44a6-87f3-8dbd9000ed85 12/14/2015 ESCA Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.
TCGA-VS-A8EK-01A-12D-A37M-01 74c4a1eb-d5c7-47a8-a23f-09ab112004a8 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-VS-A8EK-10A-01D-A37M-01 948b0546-211b-46bc-a230-e11c66864c45 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-VS-A8EL-10A-01D-A37M-01 f480ac3b-a24d-42fb-ae28-fc0102a66893 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-VS-A8QH-10A-01D-A37M-01 2af119f4-345c-49ce-a756-8862ef33d1f8 09/28/2015 CESC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-WE-A8ZR-06A-11D-A371-01 508f952d-7cc4-49a9-929d-c78b092a1fa0 09/28/2015 SKCM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-WK-A8XZ-01A-11D-A37B-01 ee4d4e2c-2cfe-4828-bfaf-9ae76b1309d8 09/28/2015 SARC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-WN-A9G9-10A-01D-A36Z-01 fef1d611-95d1-428a-8043-ef6ba326196c 09/28/2015 KIRP Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-XK-AAJU-10A-01D-A41M-01 ba506ea3-4f4f-40fb-823d-62d19bb40bcd 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-XU-AAXV-01A-11D-A427-01 9a38e9b4-1a14-4d0e-a844-d57a7d707527 09/28/2015 THYM Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-YL-A8SJ-10A-01D-A379-01 1f7f6d4b-2b97-4efb-bd77-79c3923c69ca 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-YU-AA4L-10A-01D-A437-01 56692e4e-7083-48de-b0b1-0541d2436b75 09/28/2015 TGCT Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ZG-A8QX-10A-01D-A379-01 cf45037d-0113-4f2c-bd44-60fc370134e4 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ZG-A9LM-10A-01D-A41M-01 0e0c426f-da22-4db7-b3aa-31061d26e713 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ZG-A9LN-10A-01D-A41M-01 2d8b5c03-b6ba-46ce-890f-90b2c8a9dc0e 09/28/2015 PRAD Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ZP-A9CV-10B-01D-A384-01 0499f6b7-dabc-47fd-8734-192b7de33d8a 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ZP-A9D4-10A-01D-A36Z-01 391931c3-6d87-4a58-bc75-e2bf6dc9e6fb 09/28/2015 LIHC Item flagged DNU The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable.
TCGA-ZQ-A9CR-01A-11R-A39E-31 4b0753d0-c301-4fcf-a08f-33919d3a33bc 12/14/2015 STAD Item Flagged Low Quality QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are below average for this file, which should be used with caution for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable results.