Lymphoid Neoplasm Diffuse Large B-cell Lymphoma (DLBC) Samples Report
2016_07_15 Data Snapshot
Overview
Introduction

The Broad GDAC mirrors data from the DCC on a daily basis. Although all data is mirrored, not every sample is ingested into Firehose. There are three main mechanisms that filter samples to ensure that only the most scientifically relevant samples make it into our standard data and analyses runs. These three mechanisms are redactions, replicate filtering, and blacklisting. This report summarizes the data that is ingested into Firehose, describes the three filtering mechanisms, lists those samples that are removed, and gives all available annotations from the DCC's Annotation Manager.

Summary

There were 0 redactions, 18 replicate aliquots, 0 blacklisted aliquots, and 0 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  This table provides a breakdown of sample counts on a per sample type and, if applicable, per subtype basis. Each count is a link to a table containing a list of the samples that comprise that count and details pertaining to each individual sample (e.g. platform, sequencing center, etc.). Please note, there are usually multiple protocols per data type, so there are typically many more rows than the count implies.

Sample Type BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF rawMAF
TP 58 48 48 0 48 0 48 0 47 33 48 0
NB 46 44 44 0 0 0 0 0 0 0 0 0
NBM 4 4 4 0 0 0 0 0 0 0 0 0
Totals 58 48 48 0 48 0 48 0 47 33 48 0
DLBC Primary Solid Tumor BCR Data

Table S1. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FA-8693 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A4BB Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A4XK Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A6HN Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A6HO Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A7DS Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A7Q1 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A82F Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A86F Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8041 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8041 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8042 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8042 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8043 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8043 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8046 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8046 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8047 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8047 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8061 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8061 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8062 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8062 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CQ Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CR Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CW Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CX Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FM-8000 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FM-8000 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6324 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6324 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6325 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6325 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6326 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6326 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6906 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6906 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6907 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6907 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6909 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6909 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6914 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6914 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-7351 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GR-7351 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-7353 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GR-7353 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D4 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D5 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D6 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D9 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6629 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6629 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6630 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6630 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6631 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6631 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6632 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6632 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6633 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6633 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6634 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6634 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TQ Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TT Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TU Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TV Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TW Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TX Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TY Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TZ Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9U3 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9U4 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GZ-6637 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GZ-6637 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GZ-6638 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GZ-6638 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GZ-6639 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GZ-6639 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GZ-6640 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GZ-6640 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-RQ-A68N Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-RQ-A6JB Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-RQ-AAAT Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-VB-A8QN Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
DLBC Primary Solid Tumor Clinical Data

Table S2. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A4BB Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A4XK Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A6HN Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A6HO Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A7DS Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A7Q1 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A82F Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A86F Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8041 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8042 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8043 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8046 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8047 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8061 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8062 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CQ Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CR Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CW Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CX Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FM-8000 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6324 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6325 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6326 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6906 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6907 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6909 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6914 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-7351 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-7353 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D4 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D5 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D6 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D9 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TQ Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TT Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TU Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TV Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TW Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TX Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TY Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TZ Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9U3 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9U4 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-RQ-A68N Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-RQ-A6JB Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-RQ-AAAT Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-VB-A8QN Biospecimen Metadata - Complete Set NCH BCR 1 clinical
DLBC Primary Solid Tumor CN Data

Table S3. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693-01A-11D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-8693-01A-11D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-8693-01A-11D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-8693-01A-11D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A4BB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A4BB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A4BB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A4BB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A4XK-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A4XK-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A4XK-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A4XK-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A6HN-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A6HN-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A6HN-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A6HN-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A6HO-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A6HO-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A6HO-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A6HO-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A7DS-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A7DS-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A7DS-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A7DS-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A7Q1-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A7Q1-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A7Q1-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A7Q1-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A82F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A82F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A82F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A82F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A86F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A86F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A86F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A86F-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8041-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8041-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8041-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8041-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8042-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8042-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8042-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8042-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8043-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8043-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8043-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8043-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8046-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8046-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8046-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8046-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8047-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8047-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8047-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8047-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8061-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8061-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8061-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8061-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8062-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8062-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8062-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8062-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CR-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CR-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CR-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CR-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CX-01A-12D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CX-01A-12D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CX-01A-12D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CX-01A-12D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FM-8000-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FM-8000-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FM-8000-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FM-8000-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6324-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6324-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6324-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6324-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6325-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6325-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6325-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6325-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6326-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6326-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6326-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6326-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6906-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6906-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6906-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6906-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6907-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6907-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6907-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6907-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6909-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6909-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6909-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6909-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6914-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6914-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6914-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6914-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-7351-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-7351-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-7351-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-7351-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-7353-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-7353-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-7353-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-7353-01A-11D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-A4D4-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-A4D4-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-A4D4-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-A4D4-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-A4D5-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-A4D5-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-A4D5-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-A4D5-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-A4D6-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-A4D6-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-A4D6-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-A4D6-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-A4D9-01B-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-A4D9-01B-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-A4D9-01B-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-A4D9-01B-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TQ-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TT-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TT-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TT-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TT-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TU-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TU-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TU-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TU-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TV-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TV-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TV-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TV-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TW-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TX-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TX-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TX-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TX-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TY-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TY-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TY-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TY-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TZ-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TZ-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TZ-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TZ-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9U3-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9U3-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9U3-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9U3-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9U4-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9U4-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9U4-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9U4-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-RQ-A68N-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-RQ-A68N-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-RQ-A68N-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-RQ-A68N-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-RQ-A6JB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-RQ-A6JB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-RQ-A6JB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-RQ-A6JB-01A-11D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-RQ-AAAT-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-RQ-AAAT-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-RQ-AAAT-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-RQ-AAAT-01A-11D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-VB-A8QN-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-VB-A8QN-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-VB-A8QN-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-VB-A8QN-01A-11D-A381-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
DLBC Primary Solid Tumor Methylation Data

Table S4. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693-01A-11D-2399-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A4BB-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A4XK-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A6HN-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A6HO-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A7DS-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A7Q1-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A82F-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FA-A86F-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-8041-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-8042-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-8043-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-8046-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-8047-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-8061-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-8062-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-A7CQ-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-A7CR-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-A7CW-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FF-A7CX-01A-12D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-FM-8000-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-G8-6324-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-G8-6325-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-G8-6326-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-G8-6906-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-G8-6907-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-G8-6909-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-G8-6914-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GR-7351-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GR-7353-01A-11D-2211-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GR-A4D4-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GR-A4D5-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GR-A4D6-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GR-A4D9-01B-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TQ-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TT-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TU-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TV-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TW-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TX-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TY-01A-11D-A39G-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9TZ-01A-11D-A39G-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9U3-01A-11D-A39G-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-GS-A9U4-01A-11D-A39G-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-RQ-A68N-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-RQ-A6JB-01A-11D-A31Y-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-RQ-AAAT-01A-11D-A39G-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
TCGA-VB-A8QN-01A-11D-A383-05 Illumina Infinium Human DNA Methylation 450 Johns Hopkins / University of Southern California 3 within_bioassay_data_set_function
DLBC Primary Solid Tumor mRNASeq Data

Table S5. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-8693-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-8693-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-8693-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-8693-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-8693-01A-11R-2404-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A4BB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A4BB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A4BB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A4BB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A4BB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A4BB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A4XK-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A4XK-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A4XK-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A4XK-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A4XK-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A4XK-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A6HN-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A6HN-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A6HN-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A6HN-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A6HN-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A6HN-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A6HO-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A6HO-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A6HO-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A6HO-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A6HO-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A6HO-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A7DS-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A7DS-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A7DS-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A7DS-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A7DS-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A7DS-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A7Q1-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A7Q1-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A7Q1-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A7Q1-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A7Q1-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A7Q1-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A82F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A82F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A82F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A82F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A82F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A82F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FA-A86F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FA-A86F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FA-A86F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FA-A86F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FA-A86F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FA-A86F-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-8041-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-8041-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-8041-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-8041-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-8041-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-8041-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-8042-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-8042-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-8042-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-8042-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-8042-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-8042-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-8043-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-8043-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-8043-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-8043-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-8043-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-8043-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-8046-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-8046-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-8046-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-8046-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-8046-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-8046-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-8047-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-8047-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-8047-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-8047-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-8047-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-8047-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-8061-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-8061-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-8061-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-8061-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-8061-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-8061-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-8062-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-8062-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-8062-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-8062-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-8062-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-8062-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-A7CQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-A7CQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-A7CQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-A7CQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-A7CQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-A7CQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-A7CR-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-A7CR-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-A7CR-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-A7CR-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-A7CR-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-A7CR-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-A7CW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-A7CW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-A7CW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-A7CW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-A7CW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-A7CW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FF-A7CX-01A-12R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FF-A7CX-01A-12R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FF-A7CX-01A-12R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FF-A7CX-01A-12R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FF-A7CX-01A-12R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FF-A7CX-01A-12R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-FM-8000-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-FM-8000-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-FM-8000-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-FM-8000-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-FM-8000-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-FM-8000-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-G8-6324-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-G8-6324-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-G8-6324-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-G8-6324-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-G8-6324-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-G8-6324-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-G8-6325-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-G8-6325-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-G8-6325-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-G8-6325-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-G8-6325-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-G8-6325-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-G8-6326-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-G8-6326-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-G8-6326-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-G8-6326-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-G8-6326-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-G8-6326-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-G8-6906-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-G8-6906-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-G8-6906-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-G8-6906-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-G8-6906-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-G8-6906-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-G8-6907-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-G8-6907-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-G8-6907-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-G8-6907-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-G8-6907-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-G8-6907-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-G8-6909-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-G8-6909-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-G8-6909-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-G8-6909-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-G8-6909-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-G8-6909-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-G8-6914-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-G8-6914-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-G8-6914-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-G8-6914-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-G8-6914-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-G8-6914-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GR-7351-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GR-7351-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GR-7351-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GR-7351-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GR-7351-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GR-7351-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GR-7353-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GR-7353-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GR-7353-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GR-7353-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GR-7353-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GR-7353-01A-11R-2213-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GR-A4D4-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GR-A4D4-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GR-A4D4-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GR-A4D4-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GR-A4D4-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GR-A4D4-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GR-A4D5-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GR-A4D5-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GR-A4D5-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GR-A4D5-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GR-A4D5-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GR-A4D5-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GR-A4D6-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GR-A4D6-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GR-A4D6-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GR-A4D6-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GR-A4D6-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GR-A4D6-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GR-A4D9-01B-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GR-A4D9-01B-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GR-A4D9-01B-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GR-A4D9-01B-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GR-A4D9-01B-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GR-A4D9-01B-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TQ-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TT-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TT-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TT-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TT-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TT-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TT-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TU-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TU-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TU-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TU-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TU-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TU-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TV-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TV-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TV-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TV-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TV-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TV-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TW-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TX-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TX-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TX-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TX-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TX-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TX-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TY-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TY-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TY-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TY-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TY-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TY-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9TZ-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9TZ-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9TZ-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9TZ-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9TZ-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9TZ-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9U3-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9U3-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9U3-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9U3-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9U3-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9U3-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-GS-A9U4-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-GS-A9U4-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-GS-A9U4-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-GS-A9U4-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-GS-A9U4-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-GS-A9U4-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-RQ-A68N-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-RQ-A68N-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-RQ-A68N-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-RQ-A68N-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-RQ-A68N-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-RQ-A68N-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-RQ-A6JB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-RQ-A6JB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-RQ-A6JB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-RQ-A6JB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-RQ-A6JB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-RQ-A6JB-01A-11R-A31O-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-RQ-AAAT-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-RQ-AAAT-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-RQ-AAAT-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-RQ-AAAT-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-RQ-AAAT-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-RQ-AAAT-01A-11R-A39D-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
TCGA-VB-A8QN-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes
TCGA-VB-A8QN-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_genes_normalized
TCGA-VB-A8QN-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms
TCGA-VB-A8QN-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 RSEM_isoforms_normalized
TCGA-VB-A8QN-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 exon_quantification
TCGA-VB-A8QN-01A-11R-A38C-07 Illumina HiSeq 2000 RNA Sequencing Version 2 analysis University of North Carolina 3 junction_quantification
DLBC Primary Solid Tumor miRSeq Data

Table S6. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-8693-01A-11R-2401-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A4BB-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A4BB-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A4XK-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A4XK-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A6HN-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A6HN-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A6HO-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A6HO-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A7DS-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A7DS-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A7Q1-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A7Q1-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A82F-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A82F-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FA-A86F-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FA-A86F-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-8041-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-8041-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-8042-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-8042-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-8043-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-8043-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-8046-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-8046-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-8047-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-8047-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-8061-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-8061-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-8062-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-8062-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-A7CQ-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-A7CQ-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-A7CR-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-A7CR-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-A7CW-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-A7CW-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FF-A7CX-01A-12R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FF-A7CX-01A-12R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-FM-8000-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-FM-8000-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-G8-6324-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-G8-6324-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-G8-6325-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-G8-6325-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-G8-6326-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-G8-6326-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-G8-6906-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-G8-6906-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-G8-6907-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-G8-6907-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-G8-6909-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-G8-6909-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-G8-6914-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-G8-6914-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GR-7353-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GR-7353-01A-11R-2212-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GR-A4D4-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GR-A4D4-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GR-A4D5-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GR-A4D5-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GR-A4D6-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GR-A4D6-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GR-A4D9-01B-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GR-A4D9-01B-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TQ-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TQ-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TT-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TT-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TU-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TU-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TV-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TV-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TW-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TW-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TX-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TX-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TY-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TY-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9TZ-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9TZ-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9U3-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9U3-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-GS-A9U4-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-GS-A9U4-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-RQ-A68N-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-RQ-A68N-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-RQ-A6JB-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-RQ-A6JB-01A-11R-A31S-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-RQ-AAAT-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-RQ-AAAT-01A-11R-A39J-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
TCGA-VB-A8QN-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_gene_expression
TCGA-VB-A8QN-01A-11R-A38N-13 Illumina HiSeq 2000 miRNA Sequencing Canada's Michael Smith Genome Sciences Centre 3 miR_isoform_expression
DLBC Primary Solid Tumor RPPA Data

Table S7. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A4BB-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A4XK-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A6HN-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A6HO-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A7DS-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A7Q1-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A82F-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FA-A86F-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-8041-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-8042-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-8043-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-8046-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-8047-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-8061-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-8062-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-A7CR-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-A7CW-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FF-A7CX-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-FM-8000-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-G8-6325-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-G8-6326-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-G8-6906-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-G8-6914-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-GS-A9TT-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-GS-A9TV-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-GS-A9TW-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-GS-A9TX-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-GS-A9TZ-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-GS-A9U4-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-RQ-A68N-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-RQ-A6JB-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
TCGA-VB-A8QN-01A-21-A45K-20 M.D. Anderson Reverse Phase Protein Array Core MD Anderson - Institute for Applied Cancer Science 3 protein_normalization
DLBC Primary Solid Tumor MAF Data

Table S8. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A4BB-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A4XK-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A6HN-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A6HO-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A7DS-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A7Q1-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A82F-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FA-A86F-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-8041-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-8042-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-8043-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-8046-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-8047-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-8061-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-8062-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-A7CQ-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-A7CR-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-A7CW-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FF-A7CX-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-FM-8000-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-G8-6324-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-G8-6325-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-G8-6326-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-G8-6906-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-G8-6907-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-G8-6909-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-G8-6914-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GR-7351-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GR-7353-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GR-A4D4-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GR-A4D5-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GR-A4D6-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GR-A4D9-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TQ-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TT-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TU-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TV-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TW-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TX-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TY-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9TZ-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9U3-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-GS-A9U4-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-RQ-A68N-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-RQ-A6JB-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-RQ-AAAT-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
TCGA-VB-A8QN-01 Illumina Genome Analyzer DNA Sequencing bcm_edu 2 Mutation_Calling
DLBC Blood Derived Normal BCR Data

Table S9. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FA-8693 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A4BB Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A4XK Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A6HN Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A6HO Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A7DS Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A7Q1 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A82F Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FA-A86F Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8041 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8041 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8042 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8042 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8043 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8043 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8046 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8046 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8047 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8047 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8061 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8061 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-8062 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FF-8062 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CQ Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CR Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CW Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FF-A7CX Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-FM-8000 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-FM-8000 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6324 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6324 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6325 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6325 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6326 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6326 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-7351 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GR-7351 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-7353 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GR-7353 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D4 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D5 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D6 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GR-A4D9 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6633 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6633 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-6634 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-GS-6634 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TQ Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TT Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TU Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TV Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TW Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TX Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TY Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9TZ Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9U3 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-GS-A9U4 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-RQ-A68N Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-RQ-A6JB Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-RQ-AAAT Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-VB-A8QN Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
DLBC Blood Derived Normal Clinical Data

Table S10. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A4BB Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A4XK Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A6HN Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A6HO Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A7DS Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A7Q1 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A82F Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FA-A86F Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8041 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8042 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8043 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8046 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8047 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8061 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-8062 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CQ Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CR Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CW Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FF-A7CX Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-FM-8000 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6324 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6325 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6326 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-7351 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-7353 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D4 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D5 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D6 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GR-A4D9 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TQ Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TT Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TU Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TV Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TW Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TX Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TY Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9TZ Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9U3 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-GS-A9U4 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-RQ-A68N Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-RQ-A6JB Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-RQ-AAAT Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-VB-A8QN Biospecimen Metadata - Complete Set NCH BCR 1 clinical
DLBC Blood Derived Normal CN Data

Table S11. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-FA-8693-10A-01D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-8693-10A-01D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-8693-10A-01D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-8693-10A-01D-2389-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A4BB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A4BB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A4BB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A4BB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A6HN-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A6HN-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A6HN-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A6HN-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A6HO-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A6HO-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A6HO-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A6HO-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A7DS-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A7DS-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A7DS-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A7DS-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A7Q1-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A7Q1-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A7Q1-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A7Q1-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A82F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A82F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A82F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A82F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FA-A86F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FA-A86F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FA-A86F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FA-A86F-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8041-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8041-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8041-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8041-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8042-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8042-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8042-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8042-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8043-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8043-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8043-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8043-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8046-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8046-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8046-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8046-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8047-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8047-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8047-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8047-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8061-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8061-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8061-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8061-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-8062-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-8062-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-8062-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-8062-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CR-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CR-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CR-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CR-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FF-A7CX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FF-A7CX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FF-A7CX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FF-A7CX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-FM-8000-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-FM-8000-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-FM-8000-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-FM-8000-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6324-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6324-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6324-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6324-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6325-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6325-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6325-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6325-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6326-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6326-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6326-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6326-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-7351-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-7351-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-7351-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-7351-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-7353-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-7353-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-7353-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-7353-10A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-A4D4-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-A4D4-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-A4D4-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-A4D4-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-A4D6-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-A4D6-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-A4D6-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-A4D6-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GR-A4D9-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GR-A4D9-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GR-A4D9-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GR-A4D9-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-6633-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-6633-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-6633-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-6633-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-6634-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-6634-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-6634-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-6634-10B-01D-1782-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TQ-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TT-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TT-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TT-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TT-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TU-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TU-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TU-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TU-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TV-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TV-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TV-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TV-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TW-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TX-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TY-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TY-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TY-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TY-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9TZ-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9TZ-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9TZ-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9TZ-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9U3-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9U3-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9U3-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9U3-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-GS-A9U4-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-GS-A9U4-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-GS-A9U4-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-GS-A9U4-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-RQ-A68N-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-RQ-A68N-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-RQ-A68N-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-RQ-A68N-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-RQ-A6JB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-RQ-A6JB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-RQ-A6JB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-RQ-A6JB-10A-01D-A31W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-RQ-AAAT-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-RQ-AAAT-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-RQ-AAAT-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-RQ-AAAT-10A-01D-A38W-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-VB-A8QN-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-VB-A8QN-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-VB-A8QN-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-VB-A8QN-10A-01D-A384-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
DLBC Bone Marrow Normal BCR Data

Table S12. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-G8-6906 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6906 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6907 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6907 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6909 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6909 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
TCGA-G8-6914 Biospecimen Metadata - Complete Set IGC 1 biospecimen
TCGA-G8-6914 Biospecimen Metadata - Complete Set NCH BCR 1 biospecimen
DLBC Bone Marrow Normal Clinical Data

Table S13. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-G8-6906 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6907 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6909 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
TCGA-G8-6914 Biospecimen Metadata - Complete Set NCH BCR 1 clinical
DLBC Bone Marrow Normal CN Data

Table S14. 

TCGA Barcode Platform Center Data Level Protocol
TCGA-G8-6906-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6906-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6906-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6906-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6907-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6907-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6907-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6907-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6909-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6909-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6909-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6909-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19
TCGA-G8-6914-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg18
TCGA-G8-6914-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_hg19
TCGA-G8-6914-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg18
TCGA-G8-6914-14A-01D-2209-01 Affymetrix Genome-Wide Human SNP Array 6.0 Broad Institute of MIT and Harvard 3 segmented_scna_minus_germline_cnv_hg19

The sample type short letter codes in the table above are defined in the following list.

  • TP: Primary Solid Tumor

  • TR: Recurrent Solid Tumor

  • TB: Primary Blood Derived Cancer - Peripheral Blood

  • TAP: Additional - New Primary

  • TM: Metastatic

  • TAM: Additional Metastatic

  • NB: Blood Derived Normal

  • NT: Solid Tissue Normal

  • NBC: Buccal Cell Normal

  • NBM: Bone Marrow Normal

The following platforms are outdated and are not included in the counts depicted in the table above.

  • Agilent SurePrint G3 Human CGH Microarray Kit 1x1M

  • Agilent Human Genome CGH Microarray 244A

  • Agilent Human Genome CGH Custom Microarray 2x415K

  • Affymetrix Human Exon 1.0 ST Array

  • Illumina DNA Methylation OMA002 Cancer Panel I

  • Illumina DNA Methylation OMA003 Cancer Panel I

  • Illumina Human1M-Duo BeadChip

  • Illumina 550K Infinium HumanHap550 SNP Chip

Figure 1.  Get High-res Image This figure depicts the distribution of available data on a per participant basis.

Results
FFPE Cases
Additional Annotations from the DCC's Annotations Manager
Methods & Data
Redactions and Other Annotations

Annotation data was taken from theTCGA Data Portalusing the query string:

https://tcga-data.nci.nih.gov/annotations/resources/searchannotations/json?item=TCGA

Redaction information was generated by filtering for the annotationClassificationName "Redaction"

FFPE information was generated by filtering for "FFPE" in annotation note text

Additional FFPEs were garnered from clinical data

Remaining annotations were sorted into sections by annotationClassificationName

Preprocessors
mRNA Preprocessor

The mRNA preprocess median module chooses the matrix for the platform(Affymetrix HG U133, Affymetrix Exon Array and Agilent Gene Expression) with the largest number of samples.

mRNAseq Preprocessor

The mRNAseq preprocessor picks the "scaled_estimate" (RSEM) value from Illumina HiSeq/GA2 mRNAseq level_3 (v2) data set and makes the mRNAseq matrix with log2 transformed for the downstream analysis. If there are overlap samples between two different platforms, samples from illumina hiseq will be selected. The pipeline also creates the matrix with RPKM and log2 transform from HiSeq/GA2 mRNAseq level 3 (v1) data set.

miRseq Preprocessor

The miRseq preprocessor picks the "RPM" (reads per million miRNA precursor reads) from the Illumina HiSeq/GA miRseq Level_3 data set and makes the matrix with log2 transformed values.

Methylation Preprocessor

The methylation preprocessor filters methylation data for use in downstream pipelines. To learn more about this preprocessor, please visit the documentation.