Broad GDAC Standard Data Status
Tumor Type: BRCA
 stddata__2011_10_26 Run

TumorTypeBiospecimenAny_Level_1ClinicalCNAMethylationmRNAmiRMAF
BRCA8446628107033165330522

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PipelineNot AvailableFailedSucceeded
1Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data100
2Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg100
3Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data100
4Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg100
5Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data100
6Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg100
7Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data100
8Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg100
9Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data100
10Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data100
11Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data100
12Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data100
13Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data001
14Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data100
15Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data100
16Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data100
17Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data100
18Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data100
19Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data100
20Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed001
21Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data100
22Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data100
23Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data100
24Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data100
25Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg001
26Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data100
27Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data100
28Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data100
29Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data100
30Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data100
31Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data100
32Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data100
33Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg100
34Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg100
35Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg100
36Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data100
37Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data100
38Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data100
39Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data100
40Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data100
41Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data100
42Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data100
43Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg100
44Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg100
45Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg100
46Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data100
47Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data100
48Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data100
49Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data100
50Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data001
51Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data001
52Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data100
53Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data100
Total4805

This table generated on Thu Dec 22 11:03:44 2011