Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2011_10_26 stddata Run
| TumorType | Biospecimen | Any_Level_1 | Clinical | CNA | Methylation | mRNA | miR | MAF
|
|
| BLCA | 54 | 26 | 26 | 35 | 0 | 0 | 0 | 0
|
| BRCA | 844 | 662 | 810 | 703 | 316 | 533 | 0 | 522
|
| CESC | 75 | 23 | 6 | 36 | 0 | 0 | 0 | 0
|
| COAD | 423 | 202 | 404 | 375 | 167 | 155 | 0 | 158
|
| COADREAD | 591 | 276 | 555 | 520 | 236 | 224 | 0 | 227
|
| DLBC | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| GBM | 600 | 550 | 534 | 537 | 288 | 543 | 491 | 276
|
| HNSC | 241 | 97 | 160 | 127 | 0 | 0 | 0 | 0
|
| KIRC | 502 | 475 | 497 | 489 | 219 | 72 | 0 | 0
|
| KIRP | 107 | 43 | 49 | 43 | 36 | 16 | 0 | 0
|
| LAML | 202 | 0 | 0 | 0 | 188 | 0 | 178 | 0
|
| LGG | 80 | 30 | 63 | 58 | 0 | 27 | 0 | 0
|
| LIHC | 59 | 38 | 0 | 53 | 0 | 0 | 0 | 0
|
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| LUAD | 270 | 85 | 195 | 172 | 128 | 33 | 0 | 258
|
| LUSC | 229 | 184 | 210 | 194 | 133 | 155 | 0 | 188
|
| OV | 592 | 570 | 580 | 519 | 519 | 570 | 566 | 316
|
| PAAD | 14 | 7 | 0 | 14 | 0 | 0 | 0 | 0
|
| PRAD | 101 | 65 | 0 | 82 | 0 | 0 | 0 | 0
|
| READ | 168 | 74 | 151 | 145 | 69 | 69 | 0 | 69
|
| STAD | 149 | 111 | 148 | 149 | 82 | 0 | 0 | 0
|
| THCA | 133 | 39 | 0 | 85 | 0 | 0 | 0 | 0
|
| UCEC | 421 | 220 | 341 | 283 | 117 | 54 | 0 | 237
|
| Totals | 5276 | 3501 | 4174 | 4099 | 2262 | 2227 | 1235 | 2024
|