Run Status: LNNH

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNA-Seq	miR	miR-Seq	MAF
LNNH	2	0	0	0	0	0	0	0	0

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	Not Available
1	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data	1
2	Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg	1
3	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1
4	Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg	1
5	Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data	1
6	Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg	1
7	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data	1
8	Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg	1
9	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data	1
10	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data	1
11	Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data	1
12	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1
13	Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data	1
14	Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data	1
15	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data	1
16	Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1
17	Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data	1
18	Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data	1
19	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data	1
20	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed	1
21	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data	1
22	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data	1
23	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data	1
24	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data	1
25	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg	1
26	Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data	1
27	Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data	1
28	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1
29	Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data	1
30	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data	1
31	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data	1
32	Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data	1
33	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg	1
34	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg	1
35	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg	1
36	Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data	1
37	Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data	1
38	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data	1
39	Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data	1
40	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data	1
41	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data	1
42	Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data	1
43	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg	1
44	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg	1
45	Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg	1
46	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1
47	Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1
48	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1
49	Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1
50	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data	1
51	Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data	1
52	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data	1
53	Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data	1
	Total	53

This table generated on Thu Dec 22 11:05:20 2011

Broad GDAC Standard Data StatusTumor Type: LNNH stddata__2011_11_15 Run

Broad GDAC Standard Data Status
Tumor Type: LNNH
stddata__2011_11_15 Run