Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2011_11_28 stddata Run
| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | MAF
|
|
| BLCA | 54 | 26 | 35 | 0 | 0 | 0 | 0 | 19 | 0
|
| BRCA | 844 | 818 | 703 | 316 | 533 | 221 | 0 | 784 | 507
|
| CESC | 75 | 6 | 36 | 0 | 0 | 0 | 0 | 8 | 0
|
| COADREAD | 591 | 576 | 520 | 236 | 224 | 78 | 0 | 255 | 224
|
| DLBC | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| GBM | 600 | 534 | 501 | 288 | 543 | 0 | 491 | 0 | 276
|
| HNSC | 241 | 163 | 127 | 0 | 0 | 5 | 0 | 89 | 0
|
| KIRC | 502 | 502 | 489 | 219 | 72 | 334 | 0 | 463 | 327
|
| KIRP | 107 | 63 | 43 | 36 | 16 | 14 | 0 | 16 | 0
|
| LAML | 202 | 200 | 0 | 188 | 0 | 0 | 0 | 187 | 199
|
| LGG | 119 | 74 | 58 | 0 | 27 | 0 | 0 | 30 | 0
|
| LIHC | 59 | 0 | 53 | 0 | 0 | 17 | 0 | 28 | 0
|
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| LUAD | 303 | 202 | 172 | 128 | 33 | 0 | 0 | 95 | 258
|
| LUSC | 253 | 210 | 194 | 133 | 155 | 0 | 0 | 203 | 179
|
| OV | 592 | 580 | 510 | 519 | 570 | 0 | 566 | 0 | 316
|
| PAAD | 14 | 0 | 14 | 0 | 0 | 0 | 0 | 0 | 0
|
| PRAD | 101 | 0 | 82 | 0 | 0 | 0 | 0 | 63 | 0
|
| SKCM | 219 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| STAD | 149 | 148 | 149 | 82 | 0 | 0 | 0 | 125 | 0
|
| THCA | 192 | 0 | 85 | 0 | 0 | 0 | 0 | 45 | 0
|
| UCEC | 421 | 369 | 283 | 117 | 54 | 223 | 0 | 359 | 239
|
| Totals | 5650 | 4471 | 4054 | 2262 | 2227 | 892 | 1057 | 2769 | 2525
|