Broad GDAC Standard Data Status
Tumor Type: SKCM
 stddata__2012_01_10 Run

TumorBCRClinicalCNMethylationmRNAmRNAseqmiRmiRseqMAF
SKCM21900000000

Note that the links below require Broad internal Firehose login credentials.

PipelineNot AvailableFailedSucceeded
1Merge_Clinical100
2Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data100
3Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg100
4Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data100
5Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg100
6Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data100
7Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg100
8Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data100
9Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg100
10Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data100
11Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data100
12Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data100
13Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data100
14Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data100
15Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data100
16Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__isoform_expression__data100
17Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__mirna_expression__data100
18Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data100
19Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data100
20Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data100
21Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data100
22Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data100
23Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data100
24Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data100
25Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data100
26Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data100
27Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data100
28Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data100
29Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data100
30Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data100
31Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data100
32Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data100
33Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data100
34Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data100
35Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data100
36Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed100
37Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data100
38Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data100
39Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data100
40Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data100
41Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_cna__seg100
42Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data100
43Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data100
44Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data100
45Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data100
46Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data100
47Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data100
48Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data100
49Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg100
50Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg100
51Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg100
52Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data100
53Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data100
54Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data100
55Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data100
56Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data100
57Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data100
58Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data100
59Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg100
60Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg100
61Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg100
62Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data100
63Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data100
64Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data100
65Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data100
66Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data100
67Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data100
68Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data100
69Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data100
70Mutation_Packager001
Total6901

This table generated on Wed Jan 25 12:30:40 2012