Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_01_10 stddata Run

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNAseq	miR	miRseq	MAF

BLCA	59	36	35	0	0	0	0	54	0
BRCA	844	818	786	316	533	451	0	784	507
CESC	75	6	36	0	0	0	0	8	0
COADREAD	591	584	565	236	224	78	0	255	224
DLBC	10	0	0	0	0	0	0	0	0
GBM	596	544	538	288	543	0	491	0	276
HNSC	241	163	165	0	0	5	0	89	0
KIRC	502	502	489	219	72	469	0	463	327
KIRP	107	63	43	36	16	14	0	16	0
LAML	202	200	0	188	0	179	0	187	199
LGG	119	85	80	0	27	0	0	30	0
LIHC	59	42	53	0	0	17	0	28	0
LNNH	2	0	0	0	0	0	0	0	0
LUAD	331	235	205	128	33	0	0	95	148
LUSC	253	225	211	133	155	221	0	203	179
OV	592	580	549	553	570	0	566	46	316
PAAD	14	0	14	0	0	0	0	0	0
PRAD	152	0	82	0	0	0	0	63	0
SKCM	219	0	0	0	0	0	0	0	0
STAD	149	148	149	82	0	58	0	125	0
THCA	230	42	85	0	0	0	0	45	0
UCEC	448	391	363	117	54	266	0	359	239
Totals	5795	4664	4448	2296	2227	1758	1057	2850	2415