Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_01_24 stddata Run
| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | MAF
|
|
| BLCA | 59 | 36 | 35 | 0 | 0 | 0 | 0 | 54 | 0
|
| BRCA | 855 | 825 | 781 | 313 | 529 | 450 | 0 | 781 | 507
|
| CESC | 75 | 6 | 36 | 0 | 0 | 0 | 0 | 8 | 0
|
| COADREAD | 591 | 584 | 565 | 236 | 224 | 78 | 0 | 255 | 224
|
| DLBC | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| GBM | 596 | 544 | 537 | 287 | 542 | 0 | 491 | 0 | 276
|
| HNSC | 263 | 163 | 165 | 0 | 0 | 5 | 0 | 89 | 0
|
| KIRC | 502 | 502 | 489 | 219 | 72 | 469 | 0 | 463 | 327
|
| KIRP | 107 | 63 | 43 | 36 | 16 | 14 | 0 | 16 | 0
|
| LAML | 202 | 200 | 0 | 192 | 0 | 179 | 0 | 187 | 199
|
| LGG | 119 | 85 | 80 | 0 | 27 | 0 | 0 | 30 | 0
|
| LIHC | 59 | 42 | 53 | 0 | 0 | 17 | 0 | 28 | 0
|
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| LUAD | 331 | 235 | 205 | 127 | 32 | 0 | 0 | 95 | 147
|
| LUSC | 283 | 225 | 211 | 133 | 154 | 220 | 0 | 202 | 178
|
| OV | 592 | 580 | 547 | 551 | 568 | 0 | 564 | 46 | 316
|
| PAAD | 14 | 0 | 14 | 0 | 0 | 0 | 0 | 0 | 0
|
| PRAD | 153 | 0 | 82 | 0 | 0 | 0 | 0 | 63 | 0
|
| SKCM | 219 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| STAD | 149 | 148 | 134 | 66 | 0 | 58 | 0 | 125 | 0
|
| THCA | 230 | 42 | 85 | 0 | 0 | 0 | 0 | 45 | 0
|
| UCEC | 448 | 391 | 363 | 117 | 54 | 266 | 0 | 359 | 239
|
| Totals | 5859 | 4671 | 4425 | 2277 | 2218 | 1756 | 1055 | 2846 | 2413
|