Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_03_06 stddata Run
| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | MAF
|
|
| BLCA | 89 | 65 | 35 | 59 | 0 | 0 | 0 | 54 | 28
|
| BRCA | 864 | 844 | 781 | 808 | 529 | 751 | 0 | 781 | 507
|
| CESC | 99 | 12 | 36 | 0 | 0 | 0 | 0 | 8 | 0
|
| COADREAD | 591 | 590 | 565 | 585 | 224 | 83 | 0 | 255 | 224
|
| DLBC | 10 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| GBM | 596 | 561 | 537 | 287 | 542 | 0 | 491 | 0 | 276
|
| HNSC | 294 | 227 | 165 | 292 | 0 | 13 | 0 | 89 | 0
|
| KIRC | 502 | 502 | 489 | 500 | 72 | 469 | 0 | 463 | 327
|
| KIRP | 129 | 84 | 43 | 36 | 16 | 14 | 0 | 16 | 0
|
| LAML | 202 | 200 | 0 | 192 | 0 | 179 | 0 | 187 | 199
|
| LGG | 144 | 117 | 80 | 0 | 27 | 0 | 0 | 30 | 0
|
| LIHC | 84 | 47 | 53 | 0 | 0 | 17 | 0 | 28 | 0
|
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| LUAD | 371 | 272 | 205 | 325 | 32 | 0 | 0 | 95 | 147
|
| LUSC | 290 | 269 | 211 | 282 | 154 | 220 | 0 | 202 | 178
|
| OV | 592 | 580 | 547 | 551 | 568 | 0 | 564 | 46 | 316
|
| PAAD | 38 | 0 | 14 | 0 | 0 | 0 | 0 | 0 | 0
|
| PRAD | 153 | 0 | 82 | 0 | 0 | 0 | 0 | 63 | 0
|
| SKCM | 253 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0
|
| STAD | 168 | 163 | 134 | 118 | 0 | 58 | 0 | 125 | 0
|
| THCA | 274 | 73 | 85 | 0 | 0 | 0 | 0 | 45 | 0
|
| UCEC | 462 | 392 | 363 | 373 | 54 | 266 | 0 | 359 | 239
|
| PANCANCER | 6207 | 4998 | 4425 | 4408 | 2218 | 2070 | 1055 | 2846 | 2441
|