Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_03_21 stddata Run
| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | MAF
|
|
| BLCA | 89 | 65 | 35 | 78 | 0 | 0 | 0 | 54 | 28 |
| BRCA | 864 | 844 | 781 | 808 | 529 | 751 | 0 | 781 | 507 |
| CESC | 99 | 12 | 36 | 0 | 0 | 0 | 0 | 8 | 36 |
| COADREAD | 591 | 591 | 564 | 584 | 224 | 83 | 0 | 255 | 224 |
| DLBC | 27 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| GBM | 596 | 561 | 537 | 287 | 542 | 0 | 491 | 0 | 276 |
| HNSC | 294 | 255 | 165 | 292 | 0 | 13 | 0 | 89 | 0 |
| KIRC | 502 | 502 | 489 | 500 | 72 | 469 | 0 | 463 | 327 |
| KIRP | 135 | 84 | 43 | 117 | 16 | 14 | 0 | 16 | 0 |
| LAML | 202 | 200 | 0 | 192 | 0 | 179 | 0 | 187 | 199 |
| LGG | 144 | 140 | 80 | 0 | 27 | 0 | 0 | 30 | 0 |
| LIHC | 84 | 47 | 53 | 0 | 0 | 17 | 0 | 28 | 0 |
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| LUAD | 372 | 273 | 205 | 347 | 32 | 106 | 0 | 95 | 147 |
| LUSC | 290 | 272 | 211 | 282 | 154 | 220 | 0 | 202 | 178 |
| OV | 592 | 580 | 547 | 551 | 568 | 0 | 564 | 46 | 316 |
| PAAD | 48 | 0 | 14 | 30 | 0 | 0 | 0 | 0 | 0 |
| PRAD | 153 | 0 | 82 | 153 | 0 | 0 | 0 | 63 | 0 |
| SKCM | 253 | 0 | 0 | 240 | 0 | 0 | 0 | 0 | 0 |
| STAD | 178 | 166 | 132 | 133 | 0 | 57 | 0 | 123 | 133 |
| THCA | 274 | 73 | 85 | 230 | 0 | 0 | 0 | 45 | 0 |
| UCEC | 462 | 424 | 363 | 373 | 54 | 266 | 0 | 359 | 239 |
| PANCANCER | 6251 | 5089 | 4422 | 5197 | 2218 | 2175 | 1055 | 2844 | 2610 |