Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_04_12 stddata Run

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	89	65	58	78	0	32	0	54	0	28
BRCA	859	857	833	858	529	751	0	781	408	507
CESC	110	25	68	0	0	0	0	8	0	36
COADREAD	590	590	575	584	224	83	0	255	399	224
DLBC	27	0	0	0	0	0	0	0	0	0
GBM	595	563	546	287	542	0	491	0	214	276
HNSC	294	255	165	292	0	103	0	89	0	0
KIRC	502	502	490	500	72	469	0	463	454	327
KIRP	135	84	75	117	16	14	0	16	0	0
LAML	202	200	0	192	0	179	0	187	0	199
LGG	144	140	143	0	27	0	0	30	0	0
LIHC	84	55	58	0	0	17	0	28	0	0
LNNH	2	0	0	0	0	0	0	0	0	0
LUAD	372	274	266	347	32	106	0	95	0	147
LUSC	290	272	282	282	154	220	0	202	0	178
OV	592	580	564	551	568	0	564	46	412	316
PAAD	48	0	14	30	0	0	0	0	0	0
PRAD	153	0	100	153	0	0	0	63	0	0
SKCM	253	0	219	240	0	0	0	0	0	0
STAD	162	150	132	133	0	57	0	123	0	133
THCA	274	73	228	230	0	0	0	45	0	0
UCEC	462	425	430	451	54	266	0	359	200	239
PANCANCER	6239	5110	5246	5325	2218	2297	1055	2844	2087	2610