stddata__2012_04_25 Redactions Report
Overview
Introduction
For TCGA data, redaction is the removal of cases from the data prior to publication or release. Redacted cases are generally rare, but cases must be redacted when the TSS/BCR subject link is incorrect ("unknown patient identity"), or in the case of genotype mismatch, completely wrong cancer, or completely wrong organ/tissue. Redaction occurs regardless of a case's analyte characterization or DCC data deposition status.
Summary
There were 43 redactions.
Results
Table 1. Get Full Table
| Barcode | UUID | Date | Type | Notes |
|---|---|---|---|---|
| TCGA-01-0629 | (none) | 09/02/2010 | GBM | [intgen.org]: Case was of non-ovarian origin |
| TCGA-01-0638 | (none) | 09/02/2010 | OV | [intgen.org]: Case was of non-ovarian origin |
| TCGA-02-0002 | (none) | 09/15/2010 | GBM | [intgen.org]: Genotype mismatch |
| TCGA-02-0117 | (none) | 09/15/2010 | GBM | [intgen.org]: Genotype mismatch |
| TCGA-02-2488 | 741c2eb3-db33-4a6c-9878-2587aa375134 | 10/27/2011 | GBM | Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data. |
| TCGA-06-0748 | c8f21beb-e3ca-4e5e-a386-a486776cfe88 | 10/27/2011 | GBM | Note: Scheduled for shipment in B8 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data. |
| TCGA-08-0384 | (none) | 11/22/2010 | GBM | IGC new redactions as of 11/10/2010 |
| TCGA-13-1479 | (none) | 09/02/2010 | OV | [intgen.org]: Case was of non-ovarian origin |
| TCGA-14-0784 | fc52a226-9306-45d4-b608-4bdda831ad01 | 09/12/2011 | GBM | [intgen.org]: Genotype mismatch |
| TCGA-14-1036 | f45a2391-4c79-4269-8cdd-12a914d6c4b5 | 10/27/2011 | GBM | Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data |
| TCGA-14-1824 | 270b9238-1567-4930-968a-a408b808ea1b | 10/27/2011 | GBM | Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data. |
| TCGA-24-0981 | 0c3ba4c0-d7a4-421a-af38-d5019ca45e06 | 10/28/2010 | OV | Duplicate Subject (with TCGA-04-1364) |
| TCGA-33-4579 | 1169b8c3-e5ae-47a8-91db-0ce62a5958e2 | 06/17/2011 | LUSC | per Kenna, 6/7/2011 redact case since it does not seem to be a true primary (no definitive diagnosis of lung primary squamous). |
| TCGA-35-3621 | b3169af9-675d-4f3e-a806-1840f4fc0eff | 09/14/2010 | LUAD | [intgen.org]: Genotype mismatch |
| TCGA-66-2746 | (none) | 09/02/2010 | LUSC | [intgen.org]: Genotype mismatch |
| TCGA-66-2747 | (none) | 09/02/2010 | LUSC | [intgen.org]: Genotype mismatch |
| TCGA-66-2750 | (none) | 09/02/2010 | LUSC | [intgen.org]: Genotype mismatch |
| TCGA-66-2751 | (none) | 09/02/2010 | LUSC | [intgen.org]: Genotype mismatch |
| TCGA-66-2752 | (none) | 09/02/2010 | LUSC | [intgen.org]: Genotype mismatch |
| TCGA-A7-A0DC | cb9f5e50-f49d-4899-8895-9367afcc1015 | 01/25/2011 | BRCA | DCIS and not invasive breast carcinoma from Jay Bowen/NWCH |
| TCGA-AN-A0FE | e4321d99-ed3b-4fc8-b016-2ff47d93a064 | 10/28/2010 | BRCA | Identical subject to TCGA-AN-A0FG |
| TCGA-AN-A0FG | 51d991f6-d998-420e-9357-48736c9ea0c1 | 10/28/2010 | BRCA | Identical subject to TCGA-AN-A0FE |
| TCGA-BH-A0B2 | 57a1604c-60b7-4b30-a75e-f70939532c5c | 02/14/2011 | BLCA | from Jay Bowen/NWCH - Normal tissue identity mismatch |
| TCGA-BR-4186 | 65834878-0e8d-4741-9e4c-2316105ad40d | 03/20/2012 | STAD | NA |
| TCGA-BR-4196 | c23e0eb6-e332-4a3b-9ffd-0d8f019f8ace | 11/18/2011 | STAD | NA |
| TCGA-BR-4197 | 4a27cbb6-754f-4a8d-8606-71af35d97279 | 11/18/2011 | STAD | NA |
| TCGA-BR-4205 | 65f14f48-13d8-4791-9335-92bb1599eb20 | 06/17/2011 | STAD | NA |
| TCGA-BR-4260 | 4d26fcfe-4bed-4245-b30a-a95b48785fd9 | 11/18/2011 | STAD | NA |
| TCGA-BR-4263 | 826ae72b-aa6f-44ae-b683-83f6e8f708e6 | 11/18/2011 | STAD | NA |
| TCGA-BR-4264 | c036069a-a217-433b-a5b7-f5826ddbd7fa | 11/18/2011 | STAD | NA |
| TCGA-BR-4266 | 8d62ca4c-deca-46d3-8c97-c14ce34e1bf4 | 11/18/2011 | STAD | NA |
| TCGA-BR-4270 | 6d174bec-9574-42f1-b153-706d389aa36d | 11/18/2011 | STAD | NA |
| TCGA-BR-4271 | f9c581e5-7556-429f-81bd-373ede868f9c | 11/18/2011 | STAD | NA |
| TCGA-BR-4272 | 2e333a4c-9f9c-4bac-8451-95f1d84715c1 | 11/18/2011 | STAD | NA |
| TCGA-BR-4273 | 7cb06aa4-a199-4076-85c7-e30dc6adccdc | 11/18/2011 | STAD | NA |
| TCGA-BR-4274 | 684f9ddb-6820-4a46-a122-d4465c8ad3bd | 11/18/2011 | STAD | NA |
| TCGA-BR-4276 | cfe21d5f-c885-4907-b0ef-2420a91d8d30 | 11/18/2011 | STAD | NA |
| TCGA-BR-4282 | f404c64a-8b6e-4799-9a24-0ce9f7afe3d9 | 06/17/2011 | STAD | NA |
| TCGA-BR-4283 | c55eee70-2967-4754-aabd-534bada30a3a | 03/20/2012 | STAD | Gender mismatch between clinical and genomic data. Site unable to provide/confirm correct data. |
| TCGA-BR-4285 | 649bbb1c-0997-4b69-bb17-c327c558fe7f | 11/18/2011 | STAD | NA |
| TCGA-BR-4286 | 966eed09-6f55-45df-8e51-523442e85fa4 | 11/18/2011 | STAD | NA |
| TCGA-E2-A1IP | 826d8224-55fe-48c7-a5fe-ad81ac1ebba3 | 06/15/2011 | BRCA | Tumor and normal do not match |
| TCGA-F4-6857 | e2fca12c-1a5a-4ba7-9233-d31560fc43be | 03/20/2012 | COAD | Gender mismatch between clinical and genomic data. Site unable to provide/confirm correct data. |
Methods & Data
Redaction data was taken from the TCGA Data Portal using the query string:
https://tcga-data.nci.nih.gov/annotations/resources/searchannotations/json?categoryId=CATEGORY_ID
for the following CATEGORY_ID values:
-
1 = Tumor tissue origin incorrect
-
2 = Tumor type incorrect
-
3 = Genotype mismatch
-
5 = Subject identity unknown
-
27 = Duplicate case
-
37 = Administrative Compliance