Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_05_15 stddata Run

Tumor	BCR	Clinical	CN	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	100	66	58	78	0	56	0	54	0	28
BRCA	871	857	833	858	529	777	0	781	408	507
CESC	110	26	68	0	0	0	0	8	0	36
COADREAD	590	590	574	584	224	83	0	255	399	224
DLBC	27	0	0	0	0	0	0	0	0	0
GBM	595	564	529	287	542	0	491	0	214	276
HNSC	312	283	0	292	0	263	0	89	0	0
KIRC	502	502	490	500	72	469	0	463	454	327
KIRP	135	95	75	117	16	14	0	16	0	0
LAML	202	200	0	192	0	179	0	187	0	199
LGG	181	144	143	0	27	0	0	30	0	0
LIHC	84	55	58	0	0	17	0	28	0	0
LNNH	2	0	0	0	0	0	0	0	0	0
LUAD	409	292	266	347	32	129	0	95	0	147
LUSC	326	279	282	282	154	223	0	202	0	178
OV	592	580	564	551	568	0	564	46	412	316
PAAD	48	0	14	30	0	0	0	0	0	0
PRAD	172	0	100	153	0	0	0	63	0	83
SARC	21	0	0	0	0	0	0	0	0	0
SKCM	253	0	219	240	0	0	0	0	0	0
STAD	162	155	132	133	0	57	0	123	0	133
THCA	300	158	228	230	0	3	0	45	0	0
UCEC	462	425	430	451	54	266	0	359	200	248
PANCANCER	6456	5271	5063	5325	2218	2536	1055	2844	2087	2702