Broad GDAC Standard Data Status
stddata__2012_06_06 Run for Tumor Type: STAD

TumorBCRClinicalCNMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
STAD16215513213305701270133

Note that the links below require Broad internal Firehose login credentials.

Pipeline DatasetNot AvailableAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier100010
2Merge_Clinical00010
3Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_2__bioassay_data_transformation__data10000
4Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
5Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
6Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
7Merge_cna__hg_cgh_244a__mskcc_org__Level_2__bioassay_data_transformation__data10000
8Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
9Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_2__lowess_global_normalization__data10000
10Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
11Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
12Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
13Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
14Merge_methylation__humanmethylation27__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
15Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
16Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
17Merge_methylation__illuminadnamethylation_oma003_cpi__jhu_usc_edu__Level_2__within_bioassay_data_set_function__data10000
18Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
19Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
20Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
21Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
22Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_2__unc_quantile_normalization__data10000
23Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
24Merge_mirna__h_mirna_8x15k__unc_edu__Level_2__unc_quantile_normalization__data10000
25Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
26Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
27Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data00010
28Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data00010
29Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data00010
30Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
31Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
32Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
33Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
34Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
35Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
36Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__after_5NN_copy_number__data10000
37Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
38Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copynumber_byallele__data10000
39Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__copy_number__data10000
40Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__invariantset_medianpolish__data10000
41Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__no_outlier_copy_number__data10000
42Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
43Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
44Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
45Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
46Merge_snp__human1mduo__hudsonalpha_org__Level_1__XandYintensity__data10000
47Merge_snp__human1mduo__hudsonalpha_org__Level_2__B_allele_freq__data10000
48Merge_snp__human1mduo__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
49Merge_snp__human1mduo__hudsonalpha_org__Level_2__genotyping__data10000
50Merge_snp__human1mduo__hudsonalpha_org__Level_2__Normal_LogR__data10000
51Merge_snp__human1mduo__hudsonalpha_org__Level_2__Paired_LogR__data10000
52Merge_snp__human1mduo__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
53Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
54Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
55Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
56Merge_snp__humanhap550__hudsonalpha_org__Level_1__XandYintensity__data10000
57Merge_snp__humanhap550__hudsonalpha_org__Level_2__B_allele_freq__data10000
58Merge_snp__humanhap550__hudsonalpha_org__Level_2__Delta_B_allele_freq__data10000
59Merge_snp__humanhap550__hudsonalpha_org__Level_2__genotyping__data10000
60Merge_snp__humanhap550__hudsonalpha_org__Level_2__Normal_LogR__data10000
61Merge_snp__humanhap550__hudsonalpha_org__Level_2__Paired_LogR__data10000
62Merge_snp__humanhap550__hudsonalpha_org__Level_2__Unpaired_LogR__data10000
63Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
64Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
65Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
66Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
67Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
68Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
69Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
70Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
71Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
72Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
73Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
74Mutation_Packager_Calls00010
75Mutation_Packager_Coverage00010
76RPPA_AnnotateWithGene10000
Total5800180

This table generated on Tue Jul 3 17:26:45 2012