Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_06_06 stddata Run
| Tumor | BCR | Clinical | CN | Methylation | mRNA | mRNAseq | miR | miRseq | RPPA | MAF
|
|
| BLCA | 100 | 66 | 58 | 78 | 0 | 56 | 0 | 88 | 0 | 28 |
| BRCA | 889 | 860 | 833 | 858 | 529 | 777 | 0 | 809 | 408 | 507 |
| CESC | 110 | 28 | 68 | 0 | 0 | 0 | 0 | 42 | 0 | 36 |
| COADREAD | 591 | 591 | 575 | 584 | 224 | 83 | 0 | 255 | 399 | 224 |
| DLBC | 27 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| GBM | 595 | 564 | 563 | 287 | 542 | 0 | 491 | 0 | 214 | 276 |
| HNSC | 312 | 293 | 288 | 292 | 0 | 263 | 0 | 259 | 0 | 0 |
| KIRC | 502 | 502 | 490 | 500 | 72 | 469 | 0 | 463 | 454 | 327 |
| KIRP | 135 | 95 | 75 | 117 | 16 | 14 | 0 | 43 | 0 | 0 |
| LAML | 202 | 200 | 0 | 192 | 0 | 179 | 0 | 187 | 0 | 199 |
| LGG | 181 | 144 | 144 | 0 | 27 | 0 | 0 | 67 | 0 | 0 |
| LIHC | 99 | 57 | 58 | 0 | 0 | 17 | 0 | 54 | 0 | 0 |
| LNNH | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| LUAD | 409 | 292 | 265 | 347 | 32 | 129 | 0 | 95 | 0 | 229 |
| LUSC | 326 | 279 | 282 | 282 | 154 | 223 | 0 | 202 | 0 | 178 |
| OV | 592 | 580 | 564 | 551 | 568 | 0 | 564 | 46 | 412 | 316 |
| PAAD | 48 | 0 | 14 | 30 | 0 | 0 | 0 | 0 | 0 | 0 |
| PRAD | 172 | 0 | 100 | 153 | 0 | 0 | 0 | 81 | 0 | 83 |
| SARC | 29 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| SKCM | 253 | 129 | 219 | 240 | 0 | 0 | 0 | 47 | 0 | 0 |
| STAD | 162 | 155 | 132 | 133 | 0 | 57 | 0 | 127 | 0 | 133 |
| THCA | 335 | 162 | 228 | 230 | 0 | 3 | 0 | 138 | 0 | 0 |
| UCEC | 512 | 427 | 430 | 451 | 54 | 266 | 0 | 367 | 200 | 248 |
| PANCANCER | 6583 | 5424 | 5386 | 5325 | 2218 | 2536 | 1055 | 3370 | 2087 | 2784 |