Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANK3	288	genome.wustl.edu	37	10	61834851	61834851	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	61834851	61834851	G	C	SNP	ANK3	NM_020987	human	genbank	57_37b	-1	reviewed	missense	c.5788	p.Q1930E	1.000	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
C12orf51	283450	genome.wustl.edu	37	12	112622620	112622620	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112622620	112622620	C	T	SNP	C12orf51	NM_001109662	human	genbank	57_37b	-1	provisional	missense	c.8884	p.D2962N	1.000	NULL	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
C19orf51	352909	genome.wustl.edu	37	19	55672470	55672470	+	Missense_Mutation	SNP	T	C	C	rs2365725	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55672470	55672470	T	C	SNP	C19orf51	NM_178837	human	genbank	57_37b	-1	validated	missense	c.1016	p.E339G	0.566	NULL	NULL	-		
CASK	8573	genome.wustl.edu	37	X	41379771	41379771	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41379771	41379771	T	C	SNP	CASK	NM_003688	human	genbank	57_37b	-1	validated	missense	c.2668	p.I890V	1.000	superfamily_SSF52540,HMMSmart_GuKc	HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,superfamily_SSF101288,HMMSmart_L27,HMMPfam_L27,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SSF52540,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors	
CDHR3	0	genome.wustl.edu	37	7	105636709	105636709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	105636709	105636709	G	A	SNP	CDHR3	NM_152750	human	genbank	57_37b	+1	validated	missense	c.622	p.V208M	0.898	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	-	no_errors	
CNTFR	1271	genome.wustl.edu	37	9	34564705	34564705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34564705	34564705	C	T	SNP	CNTFR	ENST00000351266	human	ensembl	57_37b	-1	known	missense	c.211	p.G71S	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
COL14A1	7373	genome.wustl.edu	37	8	121344960	121344960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121344960	121344960	G	A	SNP	COL14A1	NM_021110	human	genbank	57_37b	+1	validated	missense	c.4771	p.A1591T	0.997	HMMPfam_Collagen	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors	
CPAMD8	27151	genome.wustl.edu	37	19	17008578	17008578	+	Missense_Mutation	SNP	G	G	C	rs2608732	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17008578	17008578	G	C	SNP	CPAMD8	ENST00000443236	human	ensembl	57_37b	-1	known	missense	c.5162	p.P1721R	1.000	superfamily_Alpha-macroglobulin receptor domain	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep,superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1	-		
CPEB2	132864	genome.wustl.edu	37	4	15067943	15067943	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	15067943	15067943	A	G	SNP	CPEB2	NM_182485	human	genbank	57_37b	+1	reviewed	missense	c.1709	p.H570R	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
CSTL1	128817	genome.wustl.edu	37	20	23420938	23420938	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23420938	23420938	C	T	SNP	CSTL1	NM_138283	human	genbank	57_37b	+1	reviewed	silent	c.34	p.L12	0.954	NULL	PatternScan_CYSTATIN,HMMSmart_CY,superfamily_SSF54403,HMMPfam_Cystatin	-	no_errors	
CXorf58	254158	genome.wustl.edu	37	X	23956735	23956735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23956735	23956735	G	A	SNP	CXorf58	NM_152761	human	genbank	57_37b	+1	validated	missense	c.857	p.R286H	0.037	NULL	NULL	-	no_errors	
DCAF8	50717	genome.wustl.edu	37	1	160210108	160210108	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160210108	160210108	C	T	SNP	DCAF8	NM_015726	human	genbank	57_37b	-1	reviewed	silent	c.102	p.E34	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
EIF3G	8666	genome.wustl.edu	37	19	10226187	10226187	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10226187	10226187	G	A	SNP	EIF3G	NM_003755	human	genbank	57_37b	-1	validated	silent	c.915	p.Y305	0.992	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
ENSG00000233556	0	genome.wustl.edu	37	15	35385338	35385338	+	Silent	SNP	T	T	C	rs12901760	byCluster;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	35385338	35385338	T	C	SNP	ENSG00000233556	ENST00000454093	human	ensembl	57_37b	+1	known	silent	c.657	p.G219	0.919	NULL	superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_RNA-binding domain RBD,HMMSmart_SM00361	-		
FAM131C	348487	genome.wustl.edu	37	1	16386416	16386416	+	Silent	SNP	G	G	A	rs71510976	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16386416	16386416	G	A	SNP	FAM131C	NM_182623	human	genbank	57_37b	-1	validated	silent	c.399	p.D133	0.901	NULL	NULL	-		
FAM182B	0	genome.wustl.edu	37	20	25755889	25755889	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25755889	25755889	A	T	SNP	FAM182B	ENST00000376403	human	ensembl	57_37b	-1	known	missense	c.67	p.C23S	0.337	NULL	NULL	-	no_errors	
FNDC1	84624	genome.wustl.edu	37	6	159653544	159653544	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	159653544	159653544	G	A	SNP	FNDC1	NM_032532	human	genbank	57_37b	+1	validated	missense	c.2000	p.R667Q	0.004	NULL	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
GDF5	8200	genome.wustl.edu	37	20	34022387	34022387	+	Missense_Mutation	SNP	A	A	C	rs224331	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34022387	34022387	A	C	SNP	GDF5	NM_000557	human	genbank	57_37b	-1	reviewed	missense	c.826	p.S276A	0.856	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-		
GRIN2C	2905	genome.wustl.edu	37	17	72838649	72838649	+	Missense_Mutation	SNP	C	C	A	rs3744215	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72838649	72838649	C	A	SNP	GRIN2C	NM_000835	human	genbank	57_37b	-1	reviewed	missense	c.3627	p.R1209S	0.008	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-		
IGSF3	3321	genome.wustl.edu	37	1	117122285	117122286	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117122285	117122286	-	TCC	INS	IGSF3	NM_001542	human	genbank	57_37b	-1	validated	in_frame_ins	c.3123_3122	p.1041in_frame_insE	0.040:0.030	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig	-	no_errors	
KCNV2	169522	genome.wustl.edu	37	9	2718534	2718534	+	Silent	SNP	C	G	G	rs12237048	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	2718534	2718534	C	G	SNP	KCNV2	NM_133497	human	genbank	57_37b	+1	reviewed	silent	c.795	p.A265	1.000	superfamily_SSF81324	superfamily_BTB/POZ_fold,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-		
KIRREL	55243	genome.wustl.edu	37	1	158054332	158054332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158054332	158054332	G	A	SNP	KIRREL	NM_018240	human	genbank	57_37b	+1	validated	missense	c.473	p.R158Q	1.000	superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set	-	no_errors	
KLK15	55554	genome.wustl.edu	37	19	51329938	51329938	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51329938	51329938	C	T	SNP	KLK15	NM_017509	human	genbank	57_37b	-1	reviewed	missense	c.557	p.G186E	0.593	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors	
L1CAM	3897	genome.wustl.edu	37	X	153132281	153132281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153132281	153132281	C	T	SNP	L1CAM	NM_000425	human	genbank	57_37b	-1	reviewed	missense	c.2254	p.V752M	0.999	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
LOC653125	653125	genome.wustl.edu	37	15	32686365	32686365	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	32686365	32686365	A	G	SNP	LOC653125	XM_001724745	human	genbank	57_37b	-1	model	missense	c.1346	p.L449P	1.000	NULL	NULL	-	no_errors	
LRBA	987	genome.wustl.edu	37	4	151821369	151821369	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151821369	151821369	C	A	SNP	LRBA	NM_006726	human	genbank	57_37b	-1	validated	missense	c.1756	p.V586F	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
LRP2	4036	genome.wustl.edu	37	2	170070247	170070247	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170070247	170070247	T	G	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	missense	c.5960	p.D1987A	1.000	superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors	
NCOA3	8202	genome.wustl.edu	37	20	46279834	46279836	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	46279834	46279836	CAA	-	DEL	NCOA3	NM_181659	human	genbank	57_37b	+1	reviewed	in_frame_del	c.3760_3762	p.Q1257in_frame_del	0.527:0.539:0.525	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	(deletion:cds_exon[46279726,46280020])	no_errors	
PCDHA6	56142	genome.wustl.edu	37	5	140209165	140209165	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140209165	140209165	C	T	SNP	PCDHA6	NM_018909	human	genbank	57_37b	+1	reviewed	missense	c.1489	p.R497W	0.192	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PGC	5225	genome.wustl.edu	37	6	41712443	41712443	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41712443	41712443	G	A	SNP	PGC	NM_002630	human	genbank	57_37b	-1	reviewed	missense	c.163	p.R55C	0.205	superfamily_Pept_Aspartic	superfamily_Pept_Aspartic,HMMPfam_A1_Propeptide,HMMPfam_Asp,PatternScan_ASP_PROTEASE	-	no_errors	
PKD1	5310	genome.wustl.edu	37	16	2153508	2153508	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2153508	2153508	C	T	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	silent	c.8550	p.S2850	1.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors	
PNLIPRP2	5408	genome.wustl.edu	37	10	118387282	118387282	+	Nonstop_Mutation	SNP	A	G	G	rs11544712	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118387282	118387282	A	G	SNP	PNLIPRP2	NM_005396	human	genbank	57_37b	+1	validated	nonstop	c.476	p.*159W	0.009	NULL	NULL	-		
RERE	473	genome.wustl.edu	37	1	8421092	8421092	+	Silent	SNP	C	C	T	rs2784735	byCluster;by2Hit2Allele;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8421092	8421092	C	T	SNP	RERE	NM_001042681	human	genbank	57_37b	-1	reviewed	silent	c.2475	p.P825	0.001	HMMPfam_Atrophin-1	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1	-		
RP1	6101	genome.wustl.edu	37	8	55542731	55542748	+	In_Frame_Del	DEL	TTTGAAATGCTTGGTCAA	TTTGAAATGCTTGGTCAA	-	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	TTTGAAATGCTTGGTCAA	TTTGAAATGCTTGGTCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	55542731	55542748	TTTGAAATGCTTGGTCAA	-	DEL	RP1	NM_006269	human	genbank	57_37b	+1	reviewed	in_frame_del	c.6289_6306	p.FEMLGQ2097in_frame_del	0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.001:0.020:0.032:0.024:0.018:0.022:0.036:0.075:0.076	NULL	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX	(deletion:cds_exon[55537230,55542913])	no_errors	
SFRS17A	8227	genome.wustl.edu	37	X	1712722	1712722	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1712722	1712722	A	C	SNP	SFRS17A	NM_005088	human	genbank	57_37b	+1	validated	missense	c.367	p.T123P	0.973	NULL	NULL	-	no_errors	
SIDT2	51092	genome.wustl.edu	37	11	117063930	117063930	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117063930	117063930	A	G	SNP	SIDT2	NM_001040455	human	genbank	57_37b	+1	validated	missense	c.2167	p.I723V	1.000	NULL	NULL	-	no_errors	
SLC44A3	126969	genome.wustl.edu	37	1	95293148	95293148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	95293148	95293148	G	A	SNP	SLC44A3	NM_001114106	human	genbank	57_37b	+1	validated	missense	c.364	p.E122K	0.691	NULL	HMMPfam_DUF580	-	no_errors	
SLFN14	342618	genome.wustl.edu	37	17	33884688	33884688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33884688	33884688	G	A	SNP	SLFN14	NM_001129820	human	genbank	57_37b	-1	provisional	missense	c.394	p.R132W	0.093	NULL	HMMPfam_AAA_4	-	no_errors	
SNX5	27131	genome.wustl.edu	37	20	17928176	17928178	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17928176	17928178	CTG	-	DEL	SNX5	NM_014426	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1032_1030	p.Q344in_frame_del	1.000:1.000:1.000	HMMPfam_Vps5	superfamily_PX domain,HMMPfam_PX,HMMPfam_Vps5	(deletion:cds_exon[17928130,17928289])	no_errors	
TLR5	7100	genome.wustl.edu	37	1	223284687	223284688	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223284687	223284688	-	A	INS	TLR5	NM_003268	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1687_1686	p.P562fs	0.972:0.306	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors	
WDR72	256764	genome.wustl.edu	37	15	53907842	53907842	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	53907842	53907842	A	T	SNP	WDR72	NM_182758	human	genbank	57_37b	-1	validated	missense	c.2561	p.I854K	0.017	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
ZFP91	80829	genome.wustl.edu	37	11	58381738	58381738	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58381738	58381738	T	A	SNP	ZFP91	NM_053023	human	genbank	57_37b	+1	reviewed	missense	c.1024	p.Y342N	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
ZFR2	23217	genome.wustl.edu	37	19	3852280	3852280	+	RNA	SNP	T	C	C	rs12459753	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3852280	3852280	T	C	SNP	ZFR2	NR_027149	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.061	-	-	-		
ZNF544	27300	genome.wustl.edu	37	19	58773290	58773290	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58773290	58773290	G	C	SNP	ZNF544	NM_014480	human	genbank	57_37b	+1	provisional	missense	c.1318	p.E440Q	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF740	283337	genome.wustl.edu	37	12	53581370	53581370	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SD-01A-11D-A10Y-09	TCGA-A1-A0SD-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53581370	53581370	T	C	SNP	ZNF740	NM_001004304	human	genbank	57_37b	+1	validated	missense	c.578	p.L193P	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
