Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
APLF	200558	genome.wustl.edu	37	2	68765324	68765324	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	68765324	68765324	G	A	SNP	APLF	NM_173545	human	genbank	57_37b	+1	validated	silent	c.1125	p.K375	0.981	NULL	superfamily_SMAD_FHA,HMMPfam_zf-CCHH	-	no_errors	
ARRDC4	91947	genome.wustl.edu	37	15	98513237	98513237	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	98513237	98513237	T	C	SNP	ARRDC4	NM_183376	human	genbank	57_37b	+1	validated	missense	c.1007	p.M336T	1.000	superfamily_E set domains	HMMPfam_Arrestin_N,superfamily_E set domains,HMMPfam_Arrestin_C	-	no_errors	
B3GNT1	10678	genome.wustl.edu	37	11	66114207	66114207	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66114207	66114207	C	A	SNP	B3GNT1	NM_006876	human	genbank	57_37b	-1	reviewed	missense	c.810	p.M270I	0.644	NULL	NULL	-	no_errors	
C10orf71	118461	genome.wustl.edu	37	10	50534350	50534350	+	Missense_Mutation	SNP	G	G	A	rs11101095	byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50534350	50534350	G	A	SNP	C10orf71	NM_001135196	human	genbank	57_37b	+1	validated	missense	c.3760	p.V1254I	0.000	PatternScan_SUGAR_TRANSPORT_1	PatternScan_SUGAR_TRANSPORT_1	-		
C3orf38	285237	genome.wustl.edu	37	3	88205481	88205481	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	88205481	88205481	A	T	SNP	C3orf38	ENST00000318887	human	ensembl	57_37b	+1	known	missense	c.686	p.H229L	1.000	superfamily_NTF2-like,PatternScan_THIOL_PROTEASE_HIS	PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_NTF2-like,PatternScan_THIOL_PROTEASE_HIS	-	no_errors	
CDH1	999	genome.wustl.edu	37	16	68844139	68844139	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68844139	68844139	G	A	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	missense	c.727	p.E243K	0.999	HMMPfam_Cadherin,superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
DCDC2B	149069	genome.wustl.edu	37	1	32678163	32678163	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32678163	32678163	C	T	SNP	DCDC2B	NM_001099434	human	genbank	57_37b	+1	validated	silent	c.600	p.V200	0.498	HMMSmart_SM00537,superfamily_Doublecortin (DC),HMMPfam_DCX	HMMSmart_SM00537,superfamily_Doublecortin (DC),HMMPfam_DCX	-	no_errors	
ENSG00000234924	0	genome.wustl.edu	37	20	30777800	30777800	+	RNA	SNP	T	T	C	rs11907716	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	30777800	30777800	T	C	SNP	ENSG00000234924	ENST00000438940	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245041	0	genome.wustl.edu	37	19	50352900	50352900	+	RNA	SNP	T	A	A	rs11672587	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50352900	50352900	T	A	SNP	ENSG00000245041	ENST00000501766	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.009	-	-	-		
ENSG00000245055	0	genome.wustl.edu	37	1	19399891	19399891	+	RNA	SNP	G	A	A	rs10916899	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19399891	19399891	G	A	SNP	ENSG00000245055	ENST00000502208	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245922	0	genome.wustl.edu	37	16	87883721	87883721	+	RNA	SNP	A	C	C	rs6540092	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	87883721	87883721	A	C	SNP	ENSG00000245922	ENST00000499214	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.002	-	-	-		
ENSG00000246925	0	genome.wustl.edu	37	19	48719199	48719199	+	RNA	SNP	C	A	A	rs3786742	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48719199	48719199	C	A	SNP	ENSG00000246925	ENST00000502025	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.092	-	-	-		
ENSG00000247772	0	genome.wustl.edu	37	11	47378911	47378912	+	RNA	INS	-	-	ACAC	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47378911	47378912	-	ACAC	INS	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.694:0.700	-	-	-	no_errors	
IMPDH2	3615	genome.wustl.edu	37	3	49066745	49066745	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49066745	49066745	C	T	SNP	IMPDH2	NM_000884	human	genbank	57_37b	-1	reviewed	silent	c.39	p.V13	0.995	NULL	superfamily_SSF51412,HMMPfam_IMPDH,superfamily_SSF54631,HMMPfam_CBS,HMMSmart_CBS,PatternScan_IMP_DH_GMP_RED	-	no_errors	
KLHL20	27252	genome.wustl.edu	37	1	173725095	173725095	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173725095	173725095	A	G	SNP	KLHL20	NM_014458	human	genbank	57_37b	+1	reviewed	silent	c.885	p.L295	0.162	superfamily_Galactose oxidase central domain	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
LOC646096	646096	genome.wustl.edu	37	15	20496622	20496622	+	RNA	SNP	A	A	T	rs2601530	byCluster;byFrequency;by2Hit2Allele	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	20496622	20496622	A	T	SNP	LOC646096	XR_040858	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.053	-	-	-		
LRIG1	26018	genome.wustl.edu	37	3	66463429	66463429	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	66463429	66463429	A	G	SNP	LRIG1	NM_015541	human	genbank	57_37b	-1	validated	silent	c.657	p.N219	1.000	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
MED23	9439	genome.wustl.edu	37	6	131948806	131948806	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131948806	131948806	C	A	SNP	MED23	NM_004830	human	genbank	57_37b	-1	reviewed	nonsense	c.46	p.E16*	1.000	NULL	NULL	-	no_errors	
MGA	23269	genome.wustl.edu	37	15	42054350	42054350	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42054350	42054350	A	G	SNP	MGA	NM_001080541	human	genbank	57_37b	+1	validated	missense	c.7681	p.K2561E	1.000	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors	
MRPS18B	28973	genome.wustl.edu	37	6	30587563	30587563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30587563	30587563	C	T	SNP	MRPS18B	NM_014046	human	genbank	57_37b	+1	reviewed	missense	c.265	p.R89W	0.642	NULL	superfamily_Ribosomal protein S18,HMMPfam_Ribosomal_S18	-	no_errors	
PTCH1	5727	genome.wustl.edu	37	9	98220334	98220334	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98220334	98220334	G	A	SNP	PTCH1	NM_000264	human	genbank	57_37b	-1	reviewed	silent	c.3129	p.C1043	0.829	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	
RBM26	64062	genome.wustl.edu	37	13	79945989	79945990	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	79945989	79945990	-	A	INS	RBM26	NM_022118	human	genbank	57_37b	-1	validated	frame_shift_ins	c.404_403	p.Y135fs	1.000:1.000	NULL	superfamily_SSF101233,HMMPfam_DUF1777,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928,HMMSmart_RRM	-	no_errors	
SDR16C5	195814	genome.wustl.edu	37	8	57228816	57228816	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	57228816	57228816	G	A	SNP	SDR16C5	NM_138969	human	genbank	57_37b	-1	validated	missense	c.91	p.L31F	0.001	NULL	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors	
SYDE2	84144	genome.wustl.edu	37	1	85656315	85656315	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	85656315	85656315	T	C	SNP	SYDE2	NM_032184	human	genbank	57_37b	-1	validated	missense	c.866	p.N289S	0.999	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
TBC1D12	23232	genome.wustl.edu	37	10	96291053	96291053	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96291053	96291053	A	T	SNP	TBC1D12	NM_015188	human	genbank	57_37b	+1	validated	missense	c.2095	p.T699S	1.000	HMMSmart_TBC,HMMPfam_TBC,superfamily_RabGAP_TBC	superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-	no_errors	
UNC13C	440279	genome.wustl.edu	37	15	54306424	54306426	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	54306424	54306426	AAG	-	DEL	UNC13C	NM_001080534	human	genbank	57_37b	+1	provisional	in_frame_del	c.1324_1326	p.K443in_frame_del	0.975:1.000:0.998	NULL	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	(deletion:cds_exon[54305101,54308083])	no_errors	
WDR86	349136	genome.wustl.edu	37	7	151093204	151093204	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151093204	151093204	C	T	SNP	WDR86	NM_198285	human	genbank	57_37b	-1	validated	silent	c.384	p.Q128	0.129	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	-	no_errors	
WDR91	29062	genome.wustl.edu	37	7	134890705	134890705	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	134890705	134890705	T	C	SNP	WDR91	NM_014149	human	genbank	57_37b	-1	validated	missense	c.700	p.M234V	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ZFHX4	79776	genome.wustl.edu	37	8	77620129	77620129	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SE-01A-11D-A099-09	TCGA-A1-A0SE-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77620129	77620129	G	T	SNP	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	missense	c.2861	p.G954V	1.000	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
