Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACSL4	2182	genome.wustl.edu	37	X	108911440	108911440	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	108911440	108911440	C	T	SNP	ACSL4	NM_022977	human	genbank	57_37b	-1	reviewed	missense	c.1328	p.G443E	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
AHCTF1	25909	genome.wustl.edu	37	1	247040513	247040513	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247040513	247040513	C	A	SNP	AHCTF1	NM_015446	human	genbank	57_37b	-1	validated	nonsense	c.2752	p.E918*	1.000	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors	
ALPK3	57538	genome.wustl.edu	37	15	85400295	85400295	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85400295	85400295	G	A	SNP	ALPK3	NM_020778	human	genbank	57_37b	+1	validated	missense	c.2932	p.E978K	0.003	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMPfam_Alpha_kinase,HMMSmart_SM00811	-	no_errors	
ANK3	288	genome.wustl.edu	37	10	61965629	61965629	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	61965629	61965629	T	C	SNP	ANK3	NM_020987	human	genbank	57_37b	-1	reviewed	missense	c.1214	p.H405R	1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
ANKRD7	56311	genome.wustl.edu	37	7	117865025	117865025	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	117865025	117865025	C	G	SNP	ANKRD7	NM_019644	human	genbank	57_37b	+1	validated	missense	c.141	p.I47M	0.009	superfamily_Ankyrin repeat,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors	
APOB48R	55911	genome.wustl.edu	37	16	28506628	28506628	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28506628	28506628	G	T	SNP	APOB48R	NM_018690	human	genbank	57_37b	+1	reviewed	missense	c.266	p.R89I	0.026	NULL	NULL	-	no_errors	
ARHGAP28	79822	genome.wustl.edu	37	18	6837365	6837365	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	6837365	6837365	G	C	SNP	ARHGAP28	NM_001010000	human	genbank	57_37b	+1	validated	missense	c.18	p.K6N	1.000	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
ASL	435	genome.wustl.edu	37	7	65546799	65546799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	65546799	65546799	C	T	SNP	ASL	NM_000048	human	genbank	57_37b	+1	reviewed	missense	c.22	p.L8F	1.000	NULL	HMMPfam_Lyase_1,superfamily_L-Aspartase-like,PatternScan_FUMARATE_LYASES	-	no_errors	
ATPIF1	93974	genome.wustl.edu	37	1	28562879	28562915	+	Frame_Shift_Del	DEL	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	-	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28562879	28562915	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	-	DEL	ATPIF1	NM_016311	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.95_131	p.N32fs	0.000:0.000:0.000:0.000:0.000:0.002:0.002:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.005:0.003:0.998:1.000:1.000:0.997:0.996:0.021:0.252:0.991:0.996:1.000:1.000:0.999:1.000:1.000:0.959:0.997:0.996:0.932:1.000:1.000	HMMPfam_IATP	HMMPfam_IATP	(deletion:cds_exon[28562872,28562963])	no_errors	
BCL7B	9275	genome.wustl.edu	37	7	72957910	72957910	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72957910	72957910	G	A	SNP	BCL7B	NM_001707	human	genbank	57_37b	-1	reviewed	missense	c.233	p.S78L	1.000	NULL	HMMPfam_BCL_N	-	no_errors	
BDP1	55814	genome.wustl.edu	37	5	70858273	70858273	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	70858273	70858273	G	C	SNP	BDP1	NM_018429	human	genbank	57_37b	+1	reviewed	missense	c.7669	p.E2557Q	0.081	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,PatternScan_DNA_LIGASE_A1	-	no_errors	
BLOC1S1	2647	genome.wustl.edu	37	12	56113352	56113352	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56113352	56113352	G	C	SNP	BLOC1S1	NM_001487	human	genbank	57_37b	+1	validated	missense	c.337	p.E113Q	1.000	HMMPfam_GCN5L1	HMMPfam_GCN5L1	-	no_errors	
BRCA1	672	genome.wustl.edu	37	17	41244748	41244748	+	Nonsense_Mutation	SNP	G	G	A	rs80357223	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41244748	41244748	G	A	SNP	BRCA1	NM_007294	human	genbank	57_37b	-1	reviewed	nonsense	c.2800	p.Q934*	0.111	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	-		
C14orf37	145407	genome.wustl.edu	37	14	58605932	58605932	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	58605932	58605932	T	C	SNP	C14orf37	NM_001001872	human	genbank	57_37b	-1	predicted	missense	c.145	p.K49E	0.079	NULL	NULL	-	no_errors	
CAP2	10486	genome.wustl.edu	37	6	17551770	17551770	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	17551770	17551770	G	C	SNP	CAP2	NM_006366	human	genbank	57_37b	+1	reviewed	missense	c.1285	p.D429H	1.000	superfamily_C-terminal domain of adenylylcyclase associated protein,HMMPfam_CAP_C,HMMSmart_SM00673	HMMPfam_CAP_N,PatternScan_CAP_1,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,PatternScan_ADH_IRON_2,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMPfam_CAP_C,HMMSmart_SM00673,PatternScan_CAP_2	-	no_errors	
CCT8	10694	genome.wustl.edu	37	21	30439299	30439299	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	30439299	30439299	C	T	SNP	CCT8	NM_006585	human	genbank	57_37b	-1	validated	missense	c.475	p.E159K	1.000	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like,PatternScan_ASP_PROTEASE	-	no_errors	
CD97	976	genome.wustl.edu	37	19	14507159	14507159	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14507159	14507159	G	C	SNP	CD97	NM_078481	human	genbank	57_37b	+1	reviewed	missense	c.352	p.D118H	0.812	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179	HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
CDCA2	157313	genome.wustl.edu	37	8	25364913	25364913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	25364913	25364913	C	T	SNP	CDCA2	NM_152562	human	genbank	57_37b	+1	validated	missense	c.2731	p.P911S	0.286	NULL	NULL	-	no_errors	
CHCHD1	118487	genome.wustl.edu	37	10	75541933	75541933	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75541933	75541933	G	T	SNP	CHCHD1	NM_203298	human	genbank	57_37b	+1	validated	missense	c.100	p.G34W	0.970	HMMPfam_Coil_helix	HMMPfam_Coil_helix	-	no_errors	
CNTN4	152330	genome.wustl.edu	37	3	3078931	3078931	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	3078931	3078931	G	C	SNP	CNTN4	NM_175607	human	genbank	57_37b	+1	reviewed	missense	c.2011	p.E671Q	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
COL14A1	7373	genome.wustl.edu	37	8	121209170	121209170	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121209170	121209170	G	C	SNP	COL14A1	NM_021110	human	genbank	57_37b	+1	validated	missense	c.577	p.E193Q	0.999	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors	
COL7A1	1294	genome.wustl.edu	37	3	48612826	48612826	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48612826	48612826	G	A	SNP	COL7A1	NM_000094	human	genbank	57_37b	-1	reviewed	silent	c.6126	p.P2042	0.996	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors	
CSMD1	64478	genome.wustl.edu	37	8	2967831	2967831	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	2967831	2967831	G	A	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	nonsense	c.6460	p.Q2154*	0.484	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
CUBN	8029	genome.wustl.edu	37	10	16979594	16979594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	16979594	16979594	G	A	SNP	CUBN	NM_001081	human	genbank	57_37b	-1	reviewed	missense	c.5923	p.P1975S	0.300	NULL	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors	
CYP7A1	1581	genome.wustl.edu	37	8	59405044	59405044	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	59405044	59405044	G	C	SNP	CYP7A1	NM_000780	human	genbank	57_37b	-1	reviewed	silent	c.1083	p.L361	0.999	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DACH2	117154	genome.wustl.edu	37	X	85403921	85403921	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	85403921	85403921	C	G	SNP	DACH2	NM_053281	human	genbank	57_37b	+1	reviewed	silent	c.297	p.L99	0.984	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	-	no_errors	
DAPK2	23604	genome.wustl.edu	37	15	64204356	64204356	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	64204356	64204356	A	T	SNP	DAPK2	NM_014326	human	genbank	57_37b	-1	reviewed	missense	c.899	p.V300E	0.831	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
DHRS13	147015	genome.wustl.edu	37	17	27225602	27225602	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27225602	27225602	C	G	SNP	DHRS13	NM_144683	human	genbank	57_37b	-1	validated	missense	c.991	p.E331Q	0.002	NULL	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors	
DHX33	56919	genome.wustl.edu	37	17	5356907	5356907	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5356907	5356907	T	C	SNP	DHX33	NM_020162	human	genbank	57_37b	-1	reviewed	silent	c.1389	p.P463	0.020	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors	
DMD	1756	genome.wustl.edu	37	X	31792151	31792151	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	31792151	31792151	C	T	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.7468	p.D2490N	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors	
DNAH8	1769	genome.wustl.edu	37	6	38830152	38830152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	38830152	38830152	G	T	SNP	DNAH8	NM_001371	human	genbank	57_37b	+1	validated	missense	c.5577	p.M1859I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DRGX	644168	genome.wustl.edu	37	10	50599285	50599285	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50599285	50599285	G	C	SNP	DRGX	NM_001080520	human	genbank	57_37b	-1	provisional	missense	c.72	p.H24Q	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors	
EDC4	23644	genome.wustl.edu	37	16	67914876	67914876	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67914876	67914876	C	T	SNP	EDC4	NM_014329	human	genbank	57_37b	+1	validated	silent	c.2514	p.C838	0.999	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ENSG00000210082	0	genome.wustl.edu	37	MT	2700	2700	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	2700	2700	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000245997	0	genome.wustl.edu	37	19	37903316	37903317	+	RNA	INS	-	-	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37903316	37903317	-	T	INS	ENSG00000245997	ENST00000499775	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	
ENSG00000246667	0	genome.wustl.edu	37	1	111660903	111660903	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	111660903	111660903	G	A	SNP	ENSG00000246667	ENST00000502063	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
ENSG00000247966	0	genome.wustl.edu	37	20	48700840	48700840	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48700840	48700840	C	T	SNP	ENSG00000247966	ENST00000499325	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ESCO1	114799	genome.wustl.edu	37	18	19154369	19154369	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	19154369	19154369	G	A	SNP	ESCO1	NM_052911	human	genbank	57_37b	-1	validated	nonsense	c.436	p.Q146*	0.734	NULL	NULL	-	no_errors	
EVPL	2125	genome.wustl.edu	37	17	74005590	74005590	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74005590	74005590	C	T	SNP	EVPL	NM_001988	human	genbank	57_37b	-1	validated	silent	c.3696	p.E1232	0.010	superfamily_Prefoldin	superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_errors	
EXPH5	23086	genome.wustl.edu	37	11	108383322	108383322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108383322	108383322	C	T	SNP	EXPH5	NM_015065	human	genbank	57_37b	-1	validated	missense	c.2912	p.R971K	0.001	NULL	NULL	-	no_errors	
FAM111A	63901	genome.wustl.edu	37	11	58920660	58920660	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58920660	58920660	G	A	SNP	FAM111A	NM_001142519	human	genbank	57_37b	+1	validated	missense	c.1519	p.E507K	0.000	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys	-	no_errors	
FAM149B1	317662	genome.wustl.edu	37	10	74994996	74994996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	74994996	74994996	G	A	SNP	FAM149B1	NM_173348	human	genbank	57_37b	+1	validated	missense	c.1522	p.E508K	1.000	NULL	NULL	-	no_errors	
FAM150B	285016	genome.wustl.edu	37	2	286186	286186	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	286186	286186	G	C	SNP	FAM150B	NM_001002919	human	genbank	57_37b	-1	validated	missense	c.325	p.P109A	0.994	NULL	NULL	-	no_errors	
FAM171A1	221061	genome.wustl.edu	37	10	15255676	15255676	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15255676	15255676	G	A	SNP	FAM171A1	NM_001010924	human	genbank	57_37b	-1	validated	silent	c.1911	p.P637	0.005	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors	
FAM83B	222584	genome.wustl.edu	37	6	54791317	54791317	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	54791317	54791317	C	T	SNP	FAM83B	NM_001010872	human	genbank	57_37b	+1	validated	missense	c.593	p.S198L	1.000	HMMPfam_DUF1669,superfamily_SSF56024	HMMPfam_DUF1669,superfamily_SSF56024	-	no_errors	
FBXO4	26272	genome.wustl.edu	37	5	41934239	41934239	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41934239	41934239	G	T	SNP	FBXO4	NM_012176	human	genbank	57_37b	+1	reviewed	nonsense	c.727	p.E243*	1.000	NULL	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256	-	no_errors	
GDF9	2661	genome.wustl.edu	37	5	132197631	132197631	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132197631	132197631	G	C	SNP	GDF9	NM_005260	human	genbank	57_37b	-1	reviewed	missense	c.1015	p.L339V	0.967	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors	
GOLGB1	2804	genome.wustl.edu	37	3	121415260	121415260	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121415260	121415260	G	T	SNP	GOLGB1	NM_004487	human	genbank	57_37b	-1	validated	silent	c.4095	p.V1365	0.064	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340	-	no_errors	
GPR179	440435	genome.wustl.edu	37	17	36486443	36486443	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36486443	36486443	C	T	SNP	GPR179	NM_001004334	human	genbank	57_37b	-1	validated	silent	c.3009	p.K1003	0.991	NULL	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3	-	no_errors	
GPR32	2854	genome.wustl.edu	37	19	51274646	51274646	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51274646	51274646	C	A	SNP	GPR32	NM_001506	human	genbank	57_37b	+1	provisional	missense	c.789	p.S263R	0.150	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GPR4	2828	genome.wustl.edu	37	19	46094651	46094651	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46094651	46094651	G	C	SNP	GPR4	NM_005282	human	genbank	57_37b	-1	validated	silent	c.474	p.L158	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
H2BFWT	158983	genome.wustl.edu	37	X	103267770	103267770	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103267770	103267770	C	A	SNP	H2BFWT	NM_001002916	human	genbank	57_37b	-1	reviewed	nonsense	c.463	p.E155*	0.996	superfamily_Histone-fold,HMMSmart_H2B	PatternScan_HISTONE_H2B,superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone	-	no_errors	
HCFC2	29915	genome.wustl.edu	37	12	104460047	104460047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	104460047	104460047	G	A	SNP	HCFC2	NM_013320	human	genbank	57_37b	+1	reviewed	missense	c.266	p.G89E	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors	
HOMER3	9454	genome.wustl.edu	37	19	19049968	19049968	+	RNA	SNP	C	C	T	rs80316377	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19049968	19049968	C	T	SNP	HOMER3	NR_027297	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.000	-	-	-		
HYDIN	54768	genome.wustl.edu	37	16	70989287	70989287	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70989287	70989287	C	A	SNP	HYDIN	NM_032821	human	genbank	57_37b	-1	validated	nonsense	c.6304	p.E2102*	0.920	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
IL17RD	54756	genome.wustl.edu	37	3	57131808	57131808	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57131808	57131808	G	A	SNP	IL17RD	NM_017563	human	genbank	57_37b	-1	validated	silent	c.1923	p.A641	0.000	NULL	HMMPfam_SEFIR	-	no_errors	
IPO4	79711	genome.wustl.edu	37	14	24652347	24652347	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24652347	24652347	C	G	SNP	IPO4	NM_024658	human	genbank	57_37b	-1	validated	silent	c.2256	p.V752	0.899	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_HEAT,PatternScan_PA2_HIS	-	no_errors	
IRS4	8471	genome.wustl.edu	37	X	107978508	107978508	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107978508	107978508	G	C	SNP	IRS4	NM_003604	human	genbank	57_37b	-1	reviewed	missense	c.1067	p.S356C	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors	
ITIH5	80760	genome.wustl.edu	37	10	7605129	7605129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	7605129	7605129	C	T	SNP	ITIH5	NM_030569	human	genbank	57_37b	-1	validated	missense	c.2746	p.D916N	1.000	NULL	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors	
KCNQ2	3785	genome.wustl.edu	37	20	62038378	62038378	+	Silent	SNP	A	T	T	rs1801471	byCluster;byFrequency	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62038378	62038378	A	T	SNP	KCNQ2	NM_172107	human	genbank	57_37b	-1	reviewed	silent	c.2238	p.P746	0.030	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-		
KCNT2	343450	genome.wustl.edu	37	1	196285071	196285071	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196285071	196285071	C	A	SNP	KCNT2	NM_198503	human	genbank	57_37b	-1	validated	missense	c.2434	p.D812Y	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a	-	no_errors	
KCNU1	0	genome.wustl.edu	37	8	36663872	36663872	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	36663872	36663872	C	T	SNP	KCNU1	NM_001031836	human	genbank	57_37b	+1	validated	missense	c.554	p.S185F	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a	-	no_errors	
KDELR3	11015	genome.wustl.edu	37	22	38875700	38875700	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38875700	38875700	C	G	SNP	KDELR3	NM_016657	human	genbank	57_37b	+1	reviewed	missense	c.295	p.L99V	0.657	HMMPfam_ER_lumen_recept	HMMPfam_ER_lumen_recept,PatternScan_ER_LUMEN_RECEPTOR_1,PatternScan_ER_LUMEN_RECEPTOR_2	-	no_errors	
KLHL25	64410	genome.wustl.edu	37	15	86311940	86311940	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	86311940	86311940	A	T	SNP	KLHL25	NM_022480	human	genbank	57_37b	-1	validated	missense	c.1102	p.W368R	1.000	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	-	no_errors	
KRT28	162605	genome.wustl.edu	37	17	38955885	38955885	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38955885	38955885	C	A	SNP	KRT28	NM_181535	human	genbank	57_37b	-1	reviewed	missense	c.261	p.K87N	1.000	HMMPfam_Filament	HMMPfam_Filament	-	no_errors	
LOC100130982	0	genome.wustl.edu	37	4	54243868	54243868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	54243868	54243868	C	T	SNP	LOC100130982	XM_001714018	human	genbank	57_37b	-1	model	missense	c.559	p.E187K	0.000	NULL	NULL	-	no_errors	
LOC100288406	0	genome.wustl.edu	37	12	92226	92226	+	Missense_Mutation	SNP	G	G	A	rs71260407	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	92226	92226	G	A	SNP	LOC100288406	XM_002343141	human	genbank	57_37b	+1	model	missense	c.250	p.G84S	0.072	NULL	NULL	-		
LOC201651	201651	genome.wustl.edu	37	3	151493530	151493530	+	RNA	SNP	A	G	G	rs12152282	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	151493530	151493530	A	G	SNP	LOC201651	NR_026915	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.827	-	-	-		
LOC440292	440292	genome.wustl.edu	37	15	78234749	78234749	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78234749	78234749	A	T	SNP	LOC440292	XM_496078	human	genbank	57_37b	-1	model	missense	c.584	p.L195Q	1.000	HMMPfam_HCaRG	HMMPfam_HCaRG	-	no_errors	
LOC645954	645954	genome.wustl.edu	37	10	31000309	31000310	+	RNA	INS	-	-	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	31000309	31000310	-	T	INS	LOC645954	XR_017086	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	
LOC645954	645954	genome.wustl.edu	37	10	31000393	31000393	+	RNA	SNP	A	A	G	rs7910154	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	31000393	31000393	A	G	SNP	LOC645954	XR_017086	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LPP	4026	genome.wustl.edu	37	3	188327441	188327441	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	188327441	188327441	G	C	SNP	LPP	NM_005578	human	genbank	57_37b	+1	validated	missense	c.922	p.G308R	1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
LRRC8A	56262	genome.wustl.edu	37	9	131671269	131671269	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131671269	131671269	C	G	SNP	LRRC8A	NM_001127244	human	genbank	57_37b	+1	reviewed	missense	c.1826	p.S609C	1.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors	
MAGEA12	4111	genome.wustl.edu	37	X	151900419	151900419	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151900419	151900419	C	T	SNP	MAGEA12	NM_005367	human	genbank	57_37b	-1	reviewed	missense	c.382	p.E128K	0.001	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MARCH7	64844	genome.wustl.edu	37	2	160585678	160585678	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	160585678	160585678	G	C	SNP	MARCH7	NM_022826	human	genbank	57_37b	+1	validated	missense	c.145	p.E49Q	1.000	NULL	superfamily_SSF57850,HMMSmart_RINGv,HMMPfam_zf-C3HC4	-	no_errors	
MED13L	23389	genome.wustl.edu	37	12	116408458	116408458	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	116408458	116408458	G	A	SNP	MED13L	NM_015335	human	genbank	57_37b	-1	validated	missense	c.6008	p.S2003L	1.000	NULL	HMMPfam_TRAP_240kDa	-	no_errors	
METT5D1	196074	genome.wustl.edu	37	11	28135038	28135038	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	28135038	28135038	C	G	SNP	METT5D1	NM_001113528	human	genbank	57_37b	+1	validated	missense	c.157	p.Q53E	0.000	NULL	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_5,superfamily_Putative methyltransferase TM0872 insert domain	-	no_errors	
MICAL1	64780	genome.wustl.edu	37	6	109770913	109770913	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	109770913	109770913	C	G	SNP	MICAL1	NM_022765	human	genbank	57_37b	-1	validated	missense	c.1381	p.D461H	1.000	superfamily_Calponin-homology domain CH-domain	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MTM1	4534	genome.wustl.edu	37	X	149828220	149828220	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	149828220	149828220	G	C	SNP	MTM1	NM_000252	human	genbank	57_37b	+1	reviewed	missense	c.1344	p.M448I	1.000	superfamily_SSF52799	HMMPfam_GRAM,HMMSmart_GRAM,superfamily_SSF50729,superfamily_SSF52799,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
MUC12	10071	genome.wustl.edu	37	7	100646022	100646022	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100646022	100646022	C	A	SNP	MUC12	ENST00000379442	human	ensembl	57_37b	+1	known	missense	c.12607	p.H4203N	0.007	NULL	PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SEA,HMMSmart_SEA	-	no_errors	
MUC21	394263	genome.wustl.edu	37	6	30954351	30954351	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30954351	30954351	C	A	SNP	MUC21	NM_001010909	human	genbank	57_37b	+1	validated	missense	c.399	p.S133R	0.628	NULL	NULL	-	no_errors	
NOS3	4846	genome.wustl.edu	37	7	150706129	150706129	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150706129	150706129	G	C	SNP	NOS3	NM_000603	human	genbank	57_37b	+1	reviewed	missense	c.2224	p.E742Q	0.887	superfamily_Riboflavin synthase domain-like	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors	
NUAK2	81788	genome.wustl.edu	37	1	205272579	205272579	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205272579	205272579	C	T	SNP	NUAK2	NM_030952	human	genbank	57_37b	-1	provisional	silent	c.1886	p.*629	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PALLD	23022	genome.wustl.edu	37	4	169589516	169589516	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	169589516	169589516	G	C	SNP	PALLD	NM_016081	human	genbank	57_37b	+1	reviewed	missense	c.1084	p.E362Q	1.000	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,PatternScan_DEHYDRATASE_SER_THR	-	no_errors	
PCTK3	5129	genome.wustl.edu	37	1	205494302	205494302	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205494302	205494302	G	C	SNP	PCTK3	ENST00000437052	human	ensembl	57_37b	+1	known	missense	c.496	p.E166Q	0.997	NULL	NULL	-	no_errors	
PHF17	79960	genome.wustl.edu	37	4	129792615	129792615	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	129792615	129792615	C	G	SNP	PHF17	NM_199320	human	genbank	57_37b	+1	validated	missense	c.1727	p.S576C	1.000	NULL	HMMPfam_EPL1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Cysteine-rich domain	-	no_errors	
PLCE1	51196	genome.wustl.edu	37	10	96022290	96022323	+	Frame_Shift_Del	DEL	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	-	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96022290	96022323	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	-	DEL	PLCE1	NM_016341	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3854_3887	p.I1285fs	1.000:1.000:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:0.992:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.621:0.998:0.999:0.292:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_EF-hand	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMSmart_SM00149,HMMPfam_PI-PLC-Y,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RA,HMMSmart_SM00314	(deletion:cds_exon[96022251,96022489])	no_errors	
PNCK	139728	genome.wustl.edu	37	X	152936894	152936894	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152936894	152936894	C	G	SNP	PNCK	ENST00000449157	human	ensembl	57_37b	-1	known	missense	c.648	p.L216F	0.000	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PPARA	5465	genome.wustl.edu	37	22	46631235	46631237	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46631235	46631237	GCT	-	DEL	PPARA	NM_001001928	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1365_1367	p.L456in_frame_del	0.064:0.961:1.000	superfamily_Nuclear receptor ligand-binding domain,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	(deletion:cds_exon[46631030,46631277])	no_errors	
PREX1	57580	genome.wustl.edu	37	20	47258785	47258785	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47258785	47258785	G	C	SNP	PREX1	NM_020820	human	genbank	57_37b	-1	reviewed	missense	c.3696	p.I1232M	1.000	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors	
PZP	5858	genome.wustl.edu	37	12	9317862	9317862	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9317862	9317862	G	T	SNP	PZP	NM_002864	human	genbank	57_37b	-1	validated	missense	c.2360	p.S787Y	0.999	HMMPfam_A2M	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors	
RGMA	56963	genome.wustl.edu	37	15	93616248	93616248	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	93616248	93616248	C	T	SNP	RGMA	NM_020211	human	genbank	57_37b	-1	reviewed	silent	c.27	p.V9	1.000	NULL	HMMPfam_RGM_N,HMMPfam_RGM_C	-	no_errors	
RHCG	51458	genome.wustl.edu	37	15	90016021	90016021	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90016021	90016021	G	T	SNP	RHCG	NM_016321	human	genbank	57_37b	-1	provisional	nonsense	c.1385	p.S462*	0.000	NULL	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)	-	no_errors	
RPE	6120	genome.wustl.edu	37	2	210882585	210882585	+	Silent	SNP	C	C	T	rs2215825	byCluster;by2Hit2Allele	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	210882585	210882585	C	T	SNP	RPE	ENST00000452025	human	ensembl	57_37b	+1	known	silent	c.636	p.L212	0.153	NULL	superfamily_Ribulose-phoshate binding barrel,HMMPfam_Ribul_P_3_epim,PatternScan_RIBUL_P_3_EPIMER_1,PatternScan_RIBUL_P_3_EPIMER_2	-		
RPS2P4	0	genome.wustl.edu	37	14	105302400	105302400	+	Silent	SNP	G	G	A	rs12889174	byCluster	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105302400	105302400	G	A	SNP	RPS2P4	ENST00000360268	human	ensembl	57_37b	-1	known	silent	c.822	p.D274	1.000	NULL	superfamily_dsRNA-binding domain-like,HMMPfam_Ribosomal_S5,PatternScan_RIBOSOMAL_S5,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_Ribosomal_S5_C	-		
RYR2	6262	genome.wustl.edu	37	1	237868586	237868586	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237868586	237868586	C	G	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.9523	p.L3175V	0.988	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SCAPER	49855	genome.wustl.edu	37	15	77057342	77057342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77057342	77057342	C	T	SNP	SCAPER	NM_020843	human	genbank	57_37b	-1	validated	missense	c.1682	p.R561H	1.000	NULL	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
SLC17A4	10050	genome.wustl.edu	37	6	25776822	25776822	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	25776822	25776822	G	C	SNP	SLC17A4	NM_005495	human	genbank	57_37b	+1	validated	splice_site	c.988-1	e8-1	1.000	-	-	-	no_errors	
SLC19A3	80704	genome.wustl.edu	37	2	228563717	228563717	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	228563717	228563717	G	C	SNP	SLC19A3	NM_025243	human	genbank	57_37b	-1	reviewed	silent	c.714	p.L238	0.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_Folate_carrier	superfamily_MFS_gen_substrate_transporter,HMMPfam_Folate_carrier	-	no_errors	
SLC43A1	8501	genome.wustl.edu	37	11	57263602	57263602	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57263602	57263602	G	A	SNP	SLC43A1	NM_003627	human	genbank	57_37b	-1	provisional	silent	c.594	p.I198	1.000	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors	
SLC7A13	157724	genome.wustl.edu	37	8	87242366	87242366	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	87242366	87242366	T	G	SNP	SLC7A13	NM_138817	human	genbank	57_37b	-1	validated	silent	c.141	p.G47	0.002	NULL	HMMPfam_AA_permease	-	no_errors	
SPTBN1	6711	genome.wustl.edu	37	2	54874337	54874337	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	54874337	54874337	G	A	SNP	SPTBN1	NM_003128	human	genbank	57_37b	+1	reviewed	missense	c.4936	p.E1646K	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
TAS2R46	259292	genome.wustl.edu	37	12	11214632	11214632	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11214632	11214632	A	-	DEL	TAS2R46	NM_176887	human	genbank	57_37b	-1	validated	frame_shift_del	c.262	p.W88fs	0.021	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	(deletion:cds_exon[11213964,11214893])	no_errors	
TEK	7010	genome.wustl.edu	37	9	27169623	27169623	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	27169623	27169623	C	T	SNP	TEK	NM_000459	human	genbank	57_37b	+1	reviewed	silent	c.624	p.V208	1.000	NULL	HMMPfam_Ig_Tie2_1,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF48726,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
THRSP	7069	genome.wustl.edu	37	11	77774954	77774954	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77774954	77774954	C	G	SNP	THRSP	NM_003251	human	genbank	57_37b	+1	reviewed	silent	c.27	p.P9	1.000	HMMPfam_Spot_14	HMMPfam_Spot_14	-	no_errors	
TIFAB	497189	genome.wustl.edu	37	5	134785234	134785234	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	134785234	134785234	G	T	SNP	TIFAB	NM_001099221	human	genbank	57_37b	-1	validated	missense	c.396	p.S132R	0.984	NULL	superfamily_SMAD_FHA,HMMPfam_FHA	-	no_errors	
TMC8	147138	genome.wustl.edu	37	17	76134257	76134257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76134257	76134257	C	T	SNP	TMC8	NM_152468	human	genbank	57_37b	+1	reviewed	silent	c.1521	p.F507	1.000	HMMPfam_TMC	HMMPfam_TMC	-	no_errors	
TTC39A	22996	genome.wustl.edu	37	1	51754571	51754571	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	51754571	51754571	G	C	SNP	TTC39A	NM_001144832	human	genbank	57_37b	-1	validated	missense	c.1562	p.A521G	1.000	superfamily_SSF48452,HMMSmart_TPR	HMMPfam_Deme6,superfamily_SSF48452,HMMSmart_TPR	-	no_errors	
UPRT	139596	genome.wustl.edu	37	X	74519698	74519698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	74519698	74519698	C	T	SNP	UPRT	NM_145052	human	genbank	57_37b	+1	reviewed	missense	c.691	p.R231W	1.000	superfamily_PRTase-like	superfamily_PRTase-like	-	no_errors	
USH2A	7399	genome.wustl.edu	37	1	216420207	216420207	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216420207	216420207	G	A	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	silent	c.2529	p.L843	0.885	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
WDR7	23335	genome.wustl.edu	37	18	54424074	54424074	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	54424074	54424074	C	G	SNP	WDR7	NM_015285	human	genbank	57_37b	+1	reviewed	missense	c.2250	p.I750M	1.000	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,superfamily_WD40 repeat-like	-	no_errors	
WDR87	83889	genome.wustl.edu	37	19	38379723	38379723	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38379723	38379723	G	T	SNP	WDR87	NM_031951	human	genbank	57_37b	-1	provisional	missense	c.4471	p.Q1491K	0.000	superfamily_WD40 repeat-like,superfamily_ARM repeat	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_C_TYPE_LECTIN_1,superfamily_ARM repeat	-	no_errors	
ZFHX4	79776	genome.wustl.edu	37	8	77616522	77616522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77616522	77616522	G	A	SNP	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	missense	c.199	p.E67K	1.000	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ZNF606	80095	genome.wustl.edu	37	19	58489941	58489941	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SH-01A-11D-A099-09	TCGA-A1-A0SH-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58489941	58489941	T	C	SNP	ZNF606	NM_025027	human	genbank	57_37b	-1	validated	missense	c.2107	p.T703A	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
