Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADORA3	140	genome.wustl.edu	37	1	112029214	112029214	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112029214	112029214	C	T	SNP	ADORA3	NM_020683	human	genbank	57_37b	-1	reviewed	missense	c.866	p.R289H	0.000	HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF48726	-	no_errors	
ALG1	56052	genome.wustl.edu	37	16	5132586	5132586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	5132586	5132586	C	T	SNP	ALG1	NM_019109	human	genbank	57_37b	+1	reviewed	missense	c.1099	p.H367Y	1.000	superfamily_SSF53756,HMMPfam_Glycos_transf_1	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors	
AMZ2	51321	genome.wustl.edu	37	17	66246548	66246548	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66246548	66246548	T	G	SNP	AMZ2	NM_001033569	human	genbank	57_37b	+1	validated	missense	c.220	p.F74V	1.000	NULL	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M54,PatternScan_ZINC_PROTEASE"	-	no_errors	
ASCL3	56676	genome.wustl.edu	37	11	8959533	8959533	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	8959533	8959533	G	C	SNP	ASCL3	NM_020646	human	genbank	57_37b	-1	provisional	missense	c.176	p.P59R	0.167	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors	
BCL9L	283149	genome.wustl.edu	37	11	118770024	118770024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118770024	118770024	G	A	SNP	BCL9L	NM_182557	human	genbank	57_37b	-1	validated	silent	c.3600	p.N1200	1.000	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors	
C14orf104	55172	genome.wustl.edu	37	14	50101161	50101161	+	Missense_Mutation	SNP	G	A	A	rs74050429	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	50101161	50101161	G	A	SNP	C14orf104	NM_018139	human	genbank	57_37b	-1	reviewed	missense	c.707	p.P236L	0.000	HMMPfam_PIH1	HMMPfam_PIH1	-		
CHML	1122	genome.wustl.edu	37	1	241798828	241798828	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	241798828	241798828	G	-	DEL	CHML	NM_001821	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.241	p.H81fs	0.004	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI,superfamily_FAD-linked reductases C-terminal domain	(deletion:cds_exon[241797098,241799068])	no_errors	
CILP	8483	genome.wustl.edu	37	15	65489601	65489601	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65489601	65489601	A	T	SNP	CILP	NM_003613	human	genbank	57_37b	-1	reviewed	missense	c.3023	p.F1008Y	1.000	NULL	PatternScan_HEXAPEP_TRANSFERASES,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
CNR1	1268	genome.wustl.edu	37	6	88854518	88854518	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	88854518	88854518	A	G	SNP	CNR1	NM_016083	human	genbank	57_37b	-1	reviewed	missense	c.476	p.L159P	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
COL20A1	57642	genome.wustl.edu	37	20	61939981	61939981	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61939981	61939981	C	T	SNP	COL20A1	NM_020882	human	genbank	57_37b	+1	validated	missense	c.863	p.T288M	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors	
ENSG00000228344	0	genome.wustl.edu	37	18	5233105	5233105	+	Silent	SNP	C	G	G	rs3887348	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	5233105	5233105	C	G	SNP	ENSG00000228344	ENST00000458396	human	ensembl	57_37b	+1	known	silent	c.231	p.G77	1.000	NULL	NULL	-		
ENSG00000240720	0	genome.wustl.edu	37	7	91792659	91792659	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	91792659	91792659	C	A	SNP	ENSG00000240720	ENST00000430130	human	ensembl	57_37b	-1	known	nonsense	c.1858	p.E620*	0.996	superfamily_L domain-like	PatternScan_CARBAMOYLTRANSFERASE,superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,PatternScan_PEROXIDASE_1	-	no_errors	
ENSG00000245434	0	genome.wustl.edu	37	17	62076696	62076696	+	RNA	SNP	A	G	G	rs8080510	byCluster;by2Hit2Allele;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62076696	62076696	A	G	SNP	ENSG00000245434	ENST00000501158	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.301	-	-	-		
ENSG00000245549	0	genome.wustl.edu	37	1	16950916	16950916	+	RNA	SNP	C	C	T	rs112496835	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950916	16950916	C	T	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.889	-	-	-		
ENSG00000245900	0	genome.wustl.edu	37	5	42992040	42992040	+	RNA	SNP	G	A	A	rs2603656	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	42992040	42992040	G	A	SNP	ENSG00000245900	ENST00000500570	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.002	-	-	-		
ENSG00000246515	0	genome.wustl.edu	37	2	97590879	97590879	+	RNA	SNP	G	G	A	rs75430035	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97590879	97590879	G	A	SNP	ENSG00000246515	ENST00000500585	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247089	0	genome.wustl.edu	37	20	60979059	60979059	+	RNA	DEL	A	A	-	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60979059	60979059	A	-	DEL	ENSG00000247089	ENST00000502010	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.008	-	-	(deletion:rna[60977292,60980991])	no_errors	
FAF2	23197	genome.wustl.edu	37	5	175875463	175875463	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	175875463	175875463	C	A	SNP	FAF2	NM_014613	human	genbank	57_37b	+1	reviewed	missense	c.55	p.Q19K	1.000	superfamily_UBA_like	superfamily_UBA_like,HMMSmart_UAS,HMMPfam_UBX,superfamily_SSF54236	-	no_errors	
FLJ40292	643210	genome.wustl.edu	37	9	140657971	140657971	+	RNA	SNP	G	A	A	rs7018624	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140657971	140657971	G	A	SNP	FLJ40292	NR_024341	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
FRMPD3	84443	genome.wustl.edu	37	X	106846552	106846552	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	106846552	106846552	G	A	SNP	FRMPD3	XM_042978	human	genbank	57_37b	+1	model	silent	c.5382	p.S1794	0.850	NULL	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
GJB2	2706	genome.wustl.edu	37	13	20763283	20763283	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	20763283	20763283	G	C	SNP	GJB2	NM_004004	human	genbank	57_37b	-1	reviewed	missense	c.438	p.F146L	0.647	HMMPfam_Connexin_CCC	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors	
GNPTAB	79158	genome.wustl.edu	37	12	102161847	102161847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102161847	102161847	G	A	SNP	GNPTAB	NM_024312	human	genbank	57_37b	-1	validated	missense	c.1376	p.S459L	0.999	HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain	HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1	-	no_errors	
GRIN2C	2905	genome.wustl.edu	37	17	72846850	72846850	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72846850	72846850	G	A	SNP	GRIN2C	NM_000835	human	genbank	57_37b	-1	reviewed	silent	c.1170	p.Y390	1.000	superfamily_Periplasmic binding protein-like II	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
HAGHL	84264	genome.wustl.edu	37	16	779103	779103	+	Missense_Mutation	SNP	T	T	C	rs74711638	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	779103	779103	T	C	SNP	HAGHL	NM_207112	human	genbank	57_37b	+1	validated	missense	c.808	p.C270R	0.003	NULL	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B	-		
HNRPDL	9987	genome.wustl.edu	37	4	83350497	83350497	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	83350497	83350497	C	G	SNP	HNRPDL	NM_031372	human	genbank	57_37b	-1	reviewed	missense	c.347	p.S116T	0.255	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	no_errors	
HOOK2	29911	genome.wustl.edu	37	19	12876964	12876964	+	Missense_Mutation	SNP	G	G	C	rs897804	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12876964	12876964	G	C	SNP	HOOK2	NM_013312	human	genbank	57_37b	-1	validated	missense	c.1464	p.H488Q	1.000	HMMPfam_HOOK	HMMPfam_HOOK	-		
IKZF1	10320	genome.wustl.edu	37	7	50468114	50468114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	50468114	50468114	G	A	SNP	IKZF1	ENST00000331340	human	ensembl	57_37b	+1	known	missense	c.1349	p.R450H	1.000	NULL	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2	-	no_errors	
LATS2	26524	genome.wustl.edu	37	13	21562948	21562948	+	Missense_Mutation	SNP	G	G	A	rs558614	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21562948	21562948	G	A	SNP	LATS2	NM_014572	human	genbank	57_37b	-1	reviewed	missense	c.971	p.A324V	0.251	NULL	HMMPfam_UBA,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-		
LOC100287308	0	genome.wustl.edu	37	15	65385553	65385553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65385553	65385553	C	T	SNP	LOC100287308	XM_002343349	human	genbank	57_37b	-1	model	missense	c.353	p.R118H	0.477	NULL	NULL	-	no_errors	
LOC100290640	0	genome.wustl.edu	37	2	43703183	43703183	+	Missense_Mutation	SNP	T	G	G	rs6731980	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	43703183	43703183	T	G	SNP	LOC100290640	XM_002346453	human	genbank	57_37b	+1	model	missense	c.327	p.S109R	0.001	NULL	NULL	-		
LOC729866	729866	genome.wustl.edu	37	1	157894797	157894797	+	RNA	SNP	T	T	C	rs3923515	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157894797	157894797	T	C	SNP	LOC729866	XR_078238	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-		
MCTS1	28985	genome.wustl.edu	37	X	119738713	119738713	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119738713	119738713	G	A	SNP	MCTS1	NM_001137554	human	genbank	57_37b	+1	validated	missense	c.5	p.G2D	0.999	NULL	superfamily_PUA-like,HMMPfam_PUA,HMMSmart_PUA	-	no_errors	
NFATC4	4776	genome.wustl.edu	37	14	24845882	24845882	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24845882	24845882	G	A	SNP	NFATC4	NM_001136022	human	genbank	57_37b	+1	reviewed	silent	c.2628	p.P876	0.948	NULL	superfamily_P53_like_DNA_bnd,HMMPfam_RHD,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG	-	no_errors	
NLRC5	84166	genome.wustl.edu	37	16	57059665	57059665	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57059665	57059665	C	T	SNP	NLRC5	NM_032206	human	genbank	57_37b	+1	validated	silent	c.810	p.F270	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors	
NOTUM	147111	genome.wustl.edu	37	17	79914949	79914949	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79914949	79914949	C	T	SNP	NOTUM	NM_178493	human	genbank	57_37b	-1	validated	missense	c.697	p.A233T	1.000	HMMPfam_PAE	HMMPfam_PAE	-	no_errors	
NUP62	23636	genome.wustl.edu	37	19	50412785	50412785	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50412785	50412785	C	A	SNP	NUP62	NM_012346	human	genbank	57_37b	-1	reviewed	missense	c.280	p.A94S	0.000	NULL	HMMPfam_Nsp1_C	-	no_errors	
ODZ2	57451	genome.wustl.edu	37	5	167645417	167645417	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167645417	167645417	C	T	SNP	ODZ2	NM_001122679	human	genbank	57_37b	+1	inferred	silent	c.4494	p.N1498	0.283	superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
OFD1	8481	genome.wustl.edu	37	X	13776561	13776561	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	13776561	13776561	C	T	SNP	OFD1	NM_003611	human	genbank	57_37b	+1	reviewed	nonsense	c.1648	p.Q550*	0.998	NULL	HMMSmart_SM00667,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors	
PPFIBP2	8495	genome.wustl.edu	37	11	7650734	7650734	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7650734	7650734	G	T	SNP	PPFIBP2	NM_003621	human	genbank	57_37b	+1	validated	silent	c.933	p.R311	0.475	NULL	HMMPfam_Integrase_DNA,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors	
PSMD11	5717	genome.wustl.edu	37	17	30771560	30771560	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	30771560	30771560	G	C	SNP	PSMD11	NM_002815	human	genbank	57_37b	+1	reviewed	missense	c.19	p.V7L	1.000	NULL	"superfamily_TPR-like,HMMSmart_SM00753,HMMPfam_PCI,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00088"	-	no_errors	
RANBP6	26953	genome.wustl.edu	37	9	6012961	6012961	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	6012961	6012961	T	C	SNP	RANBP6	NM_012416	human	genbank	57_37b	-1	validated	missense	c.2647	p.S883G	0.932	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors	
RASSF7	8045	genome.wustl.edu	37	11	562707	562707	+	Missense_Mutation	SNP	G	G	C	rs111862990	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	562707	562707	G	C	SNP	RASSF7	NM_003475	human	genbank	57_37b	+1	validated	missense	c.753	p.Q251H	0.310	NULL	HMMPfam_RA,HMMSmart_SM00314	-		
SCN4A	6329	genome.wustl.edu	37	17	62022840	62022840	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62022840	62022840	G	C	SNP	SCN4A	NM_000334	human	genbank	57_37b	-1	reviewed	missense	c.3600	p.I1200M	0.255	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-	no_errors	
SIK1	150094	genome.wustl.edu	37	21	44839242	44839242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44839242	44839242	C	T	SNP	SIK1	NM_173354	human	genbank	57_37b	-1	validated	silent	c.1236	p.S412	0.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_UBA	-	no_errors	
SNAI1	6615	genome.wustl.edu	37	20	48604526	48604526	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48604526	48604526	G	A	SNP	SNAI1	NM_005985	human	genbank	57_37b	+1	reviewed	missense	c.728	p.R243Q	0.963	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
SPEN	23013	genome.wustl.edu	37	1	16258909	16258915	+	Frame_Shift_Del	DEL	CCCTGTT	CCCTGTT	-	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	CCCTGTT	CCCTGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16258909	16258915	CCCTGTT	-	DEL	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.6174_6180	p.P2059fs	0.005:0.012:0.131:0.122:0.233:0.299:0.561	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	(deletion:cds_exon[16254586,16262761])	no_errors	
TH1L	51497	genome.wustl.edu	37	20	57566094	57566094	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57566094	57566094	G	C	SNP	TH1L	NM_198976	human	genbank	57_37b	+1	reviewed	missense	c.945	p.K315N	1.000	HMMPfam_TH1	HMMPfam_TH1	-	no_errors	
TNRC6A	27327	genome.wustl.edu	37	16	24807329	24807332	+	Frame_Shift_Del	DEL	ATTT	ATTT	-	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	ATTT	ATTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24807329	24807332	ATTT	-	DEL	TNRC6A	ENST00000352205	human	ensembl	57_37b	+1	known	frame_shift_del	c.570_573	p.I192fs	0.995:0.993:0.990:0.987	NULL	HMMPfam_Ago_hook	(deletion:cds_exon[24807228,24807338])	no_errors	
ZBTB11	27107	genome.wustl.edu	37	3	101378855	101378855	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	101378855	101378855	A	C	SNP	ZBTB11	NM_014415	human	genbank	57_37b	-1	validated	missense	c.1818	p.F606L	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF543	125919	genome.wustl.edu	37	19	57839971	57839971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SJ-01A-11D-A099-09	TCGA-A1-A0SJ-10A-02D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57839971	57839971	G	A	SNP	ZNF543	NM_213598	human	genbank	57_37b	+1	validated	missense	c.1141	p.D381N	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
