Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACBD5	91452	genome.wustl.edu	37	10	27520705	27520705	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27520705	27520705	A	C	SNP	ACBD5	NM_145698	human	genbank	57_37b	-1	validated	missense	c.347	p.M116R	1.000	superfamily_ACBP,HMMPfam_ACBP	superfamily_ACBP,HMMPfam_ACBP,PatternScan_ACB_1	-	no_errors	
AHNAK	79026	genome.wustl.edu	37	11	62297801	62297801	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62297801	62297801	T	C	SNP	AHNAK	NM_001620	human	genbank	57_37b	-1	validated	missense	c.4088	p.K1363R	1.000	HMMPfam_CheC	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors	
ANKRD42	338699	genome.wustl.edu	37	11	82938872	82938872	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	82938872	82938872	A	T	SNP	ANKRD42	NM_182603	human	genbank	57_37b	+1	validated	missense	c.787	p.I263F	0.999	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,PatternScan_EF_HAND_1	-	no_errors	
ARL11	115761	genome.wustl.edu	37	13	50204651	50204651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	50204651	50204651	C	T	SNP	ARL11	NM_138450	human	genbank	57_37b	+1	validated	missense	c.68	p.A23V	0.995	HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540	PatternScan_ARF,HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540	-	no_errors	
ASB10	136371	genome.wustl.edu	37	7	150878405	150878405	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150878405	150878405	T	C	SNP	ASB10	NM_001142459	human	genbank	57_37b	-1	reviewed	missense	c.860	p.D287G	0.663	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_SOCS_box	-	no_errors	
ATG2A	23130	genome.wustl.edu	37	11	64673972	64673972	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64673972	64673972	A	C	SNP	ATG2A	NM_015104	human	genbank	57_37b	-1	validated	missense	c.3017	p.L1006R	1.000	NULL	PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C,PatternScan_ADH_ZINC	-	no_errors	
BRCA1	672	genome.wustl.edu	37	17	41245985	41245985	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41245985	41245985	T	C	SNP	BRCA1	NM_007294	human	genbank	57_37b	-1	reviewed	silent	c.1563	p.A521	0.567	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain	-	no_errors	
BUB1	699	genome.wustl.edu	37	2	111419365	111419365	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	111419365	111419365	C	T	SNP	BUB1	NM_004336	human	genbank	57_37b	-1	reviewed	silent	c.1011	p.A337	0.000	NULL	HMMPfam_Mad3_BUB1_I,HMMSmart_SM00777,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
C19orf29OS	404665	genome.wustl.edu	37	19	3614652	3614652	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3614652	3614652	G	C	SNP	C19orf29OS	XR_078668	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-	no_errors	
CAMTA2	23125	genome.wustl.edu	37	17	4883751	4883751	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4883751	4883751	G	A	SNP	CAMTA2	NM_015099	human	genbank	57_37b	-1	validated	missense	c.866	p.S289F	1.000	NULL	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Ank,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors	
CCL23	6368	genome.wustl.edu	37	17	34340326	34340326	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34340326	34340326	G	A	SNP	CCL23	NM_005064	human	genbank	57_37b	-1	reviewed	missense	c.325	p.R109C	0.000	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	-	no_errors	
CECR2	27443	genome.wustl.edu	37	22	18022211	18022211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18022211	18022211	C	T	SNP	CECR2	ENST00000400573	human	ensembl	57_37b	+1	known	silent	c.2313	p.H771	0.000	NULL	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
CHRNB4	1143	genome.wustl.edu	37	15	78921983	78921983	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78921983	78921983	C	T	SNP	CHRNB4	NM_000750	human	genbank	57_37b	-1	validated	missense	c.664	p.V222M	0.997	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors	
COL21A1	81578	genome.wustl.edu	37	6	55940289	55940289	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	55940289	55940289	G	T	SNP	COL21A1	NM_030820	human	genbank	57_37b	-1	reviewed	silent	c.1899	p.A633	0.896	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,HMMPfam_Collagen	-	no_errors	
COPE	11316	genome.wustl.edu	37	19	19030117	19030117	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19030117	19030117	C	G	SNP	COPE	NM_007263	human	genbank	57_37b	-1	reviewed	missense	c.41	p.G14A	0.999	NULL	HMMPfam_Coatomer_E,superfamily_TPR-like	-	no_errors	
CYP21A2	1589	genome.wustl.edu	37	6	32007849	32007849	+	Missense_Mutation	SNP	G	G	C	rs77333558	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32007849	32007849	G	C	SNP	CYP21A2	NM_000500	human	genbank	57_37b	+1	reviewed	missense	c.806	p.S269T	0.000	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-		
DMBT1	1755	genome.wustl.edu	37	10	124390771	124390771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	124390771	124390771	G	A	SNP	DMBT1	NM_007329	human	genbank	57_37b	+1	reviewed	missense	c.5933	p.R1978H	0.000	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors	
DTX1	1840	genome.wustl.edu	37	12	113515277	113515277	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113515277	113515277	C	A	SNP	DTX1	NM_004416	human	genbank	57_37b	+1	reviewed	missense	c.308	p.P103Q	1.000	HMMPfam_WWE	PatternScan_ZF_RING_1,HMMPfam_WWE,HMMSmart_WWE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
ENSG00000005206	0	genome.wustl.edu	37	19	2339888	2339888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2339888	2339888	C	T	SNP	ENSG00000005206	ENST00000452401	human	ensembl	57_37b	+1	known	missense	c.665	p.T222M	1.000	HMMPfam_Peptidase_A22B,HMMSmart_SM00730	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,HMMPfam_Peptidase_A22B,HMMSmart_SM00730	-	no_errors	
ENSG00000223274	0	genome.wustl.edu	37	X	1419249	1419249	+	RNA	SNP	A	A	G	rs28422107	byCluster;by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1419249	1419249	A	G	SNP	ENSG00000223274	ENST00000411342	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.236	-	-	-		
FAT3	120114	genome.wustl.edu	37	11	92533189	92533189	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92533189	92533189	T	A	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	missense	c.7010	p.F2337Y	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
FLJ32810	143872	genome.wustl.edu	37	11	100845328	100845328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	100845328	100845328	C	T	SNP	FLJ32810	NM_152432	human	genbank	57_37b	+1	provisional	missense	c.1849	p.P617S	0.998	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,PatternScan_IG_MHC	-	no_errors	
GDPD5	81544	genome.wustl.edu	37	11	75160132	75160132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	75160132	75160132	C	T	SNP	GDPD5	NM_030792	human	genbank	57_37b	-1	validated	missense	c.604	p.V202M	0.608	NULL	superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD	-	no_errors	
GMEB1	10691	genome.wustl.edu	37	1	29016663	29016663	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29016663	29016663	A	T	SNP	GMEB1	NM_006582	human	genbank	57_37b	+1	reviewed	missense	c.206	p.E69V	1.000	NULL	HMMPfam_SAND,superfamily_SAND domain-like,HMMSmart_SM00258	-	no_errors	
GTF3C1	2975	genome.wustl.edu	37	16	27480677	27480686	+	Frame_Shift_Del	DEL	ACCACAATGC	ACCACAATGC	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	ACCACAATGC	ACCACAATGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	27480677	27480686	ACCACAATGC	-	DEL	GTF3C1	NM_001520	human	genbank	57_37b	-1	validated	frame_shift_del	c.5009_5000	p.S1667fs	1.000:1.000:1.000:1.000:1.000:0.905:1.000:1.000:1.000:1.000	NULL	HMMPfam_B-block_TFIIIC	(deletion:cds_exon[27480612,27480871])	no_errors	
HNRNPA1	3178	genome.wustl.edu	37	12	54678053	54678053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54678053	54678053	G	A	SNP	HNRNPA1	NM_031157	human	genbank	57_37b	+1	reviewed	missense	c.1075	p.G359S	0.998	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
IDS	3423	genome.wustl.edu	37	X	148586645	148586645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	148586645	148586645	C	T	SNP	IDS	NM_000202	human	genbank	57_37b	-1	reviewed	missense	c.23	p.R8Q	0.001	NULL	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors	
LAMA3	3909	genome.wustl.edu	37	18	21534511	21534511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21534511	21534511	G	A	SNP	LAMA3	NM_198129	human	genbank	57_37b	+1	reviewed	missense	c.9901	p.G3301S	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_CHAPERONINS_CPN60	-	no_errors	
LARGE	9215	genome.wustl.edu	37	22	34157362	34157362	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	34157362	34157362	G	T	SNP	LARGE	NM_004737	human	genbank	57_37b	-1	reviewed	missense	c.102	p.F34L	1.000	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors	
LIN28B	389421	genome.wustl.edu	37	6	105526463	105526463	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	105526463	105526463	A	T	SNP	LIN28B	NM_001004317	human	genbank	57_37b	+1	provisional	silent	c.558	p.P186	0.338	NULL	superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343	-	no_errors	
LIN9	286826	genome.wustl.edu	37	1	226426717	226426717	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226426717	226426717	C	T	SNP	LIN9	NM_173083	human	genbank	57_37b	-1	provisional	silent	c.1248	p.K416	0.999	NULL	HMMPfam_DIRP	-	no_errors	
LOC100129958	0	genome.wustl.edu	37	6	162990703	162990703	+	Silent	SNP	G	G	A	rs12215884	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	162990703	162990703	G	A	SNP	LOC100129958	XM_001719102	human	genbank	57_37b	+1	model	silent	c.891	p.K297	1.000	NULL	HMMPfam_Filament,PatternScan_IF	-		
LOC645954	645954	genome.wustl.edu	37	10	31006008	31006008	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	31006008	31006008	C	T	SNP	LOC645954	XR_017086	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors	
LRP2	4036	genome.wustl.edu	37	2	170030639	170030639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170030639	170030639	C	T	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	missense	c.10804	p.A3602T	1.000	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors	
LSR	51599	genome.wustl.edu	37	19	35749935	35749935	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35749935	35749935	A	G	SNP	LSR	NM_205834	human	genbank	57_37b	+1	validated	missense	c.686	p.N229S	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_LSR,PatternScan_ADH_SHORT	-	no_errors	
MYPN	84665	genome.wustl.edu	37	10	69881873	69881873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	69881873	69881873	C	T	SNP	MYPN	NM_032578	human	genbank	57_37b	+1	validated	silent	c.678	p.H226	0.015	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET	-	no_errors	
NPAS2	4862	genome.wustl.edu	37	2	101541639	101541639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	101541639	101541639	C	T	SNP	NPAS2	NM_002518	human	genbank	57_37b	+1	reviewed	missense	c.64	p.R22W	1.000	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-	no_errors	
NSMAF	8439	genome.wustl.edu	37	8	59571856	59571856	+	Missense_Mutation	SNP	A	C	C	rs59606339	byCluster;by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	59571856	59571856	A	C	SNP	NSMAF	NM_001144772	human	genbank	57_37b	-1	reviewed	missense	c.50	p.I17S	0.000	NULL	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
OBFC2B	79035	genome.wustl.edu	37	12	56619427	56619427	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56619427	56619427	G	-	DEL	OBFC2B	NM_024068	human	genbank	57_37b	+1	validated	frame_shift_del	c.238	p.G80fs	1.000	superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti	superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti	(deletion:cds_exon[56619408,56619479])	no_errors	
OR1D4	0	genome.wustl.edu	37	17	2966828	2966828	+	Missense_Mutation	SNP	C	C	T	rs2258425	bySubmitter	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2966828	2966828	C	T	SNP	OR1D4	NM_003552	human	genbank	57_37b	-1	provisional	missense	c.128	p.R43Q	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-		
OR2T34	127068	genome.wustl.edu	37	1	248737734	248737734	+	Missense_Mutation	SNP	G	G	A	rs946770	byCluster	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248737734	248737734	G	A	SNP	OR2T34	NM_001001821	human	genbank	57_37b	-1	provisional	missense	c.325	p.H109Y	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
OR5AU1	390445	genome.wustl.edu	37	14	21623196	21623196	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21623196	21623196	G	C	SNP	OR5AU1	NM_001004731	human	genbank	57_37b	-1	provisional	missense	c.989	p.T330R	0.999	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PEPD	5184	genome.wustl.edu	37	19	33892709	33892709	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33892709	33892709	G	A	SNP	PEPD	NM_000285	human	genbank	57_37b	-1	reviewed	silent	c.885	p.N295	0.944	superfamily_Peptidase_M24_cat_core,HMMPfam_Peptidase_M24	superfamily_SSF53092,HMMPfam_AMP_N,superfamily_Peptidase_M24_cat_core,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE	-	no_errors	
PJA1	64219	genome.wustl.edu	37	X	68383057	68383057	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	68383057	68383057	C	A	SNP	PJA1	NM_145119	human	genbank	57_37b	-1	validated	missense	c.25	p.V9L	0.491	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
PLEC	0	genome.wustl.edu	37	8	145007427	145007427	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145007427	145007427	G	A	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	silent	c.1767	p.L589	0.983	NULL	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors	
POU4F1	5457	genome.wustl.edu	37	13	79176484	79176486	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	79176484	79176486	TGG	-	DEL	POU4F1	NM_006237	human	genbank	57_37b	-1	validated	in_frame_del	c.326_324	p.H108in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	(deletion:cds_exon[79175550,79176686])	no_errors	
RFWD2	64326	genome.wustl.edu	37	1	176012391	176012391	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	176012391	176012391	T	G	SNP	RFWD2	NM_022457	human	genbank	57_37b	-1	validated	silent	c.1543	p.R515	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
RFX8	0	genome.wustl.edu	37	2	102014145	102014145	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	102014145	102014145	T	A	SNP	RFX8	NM_001145664	human	genbank	57_37b	-1	validated	silent	c.1287	p.A429	0.000	NULL	NULL	-	no_errors	
RXFP4	339403	genome.wustl.edu	37	1	155912487	155912487	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155912487	155912487	G	T	SNP	RXFP4	NM_181885	human	genbank	57_37b	+1	validated	missense	c.987	p.L329F	0.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
SCD5	79966	genome.wustl.edu	37	4	83719603	83719603	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	83719603	83719603	C	A	SNP	SCD5	NM_001037582	human	genbank	57_37b	-1	validated	missense	c.88	p.G30C	0.004	NULL	HMMPfam_FA_desaturase,PatternScan_FATTY_ACID_DESATUR_1	-	no_errors	
SCN9A	6335	genome.wustl.edu	37	2	167159748	167159748	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	167159748	167159748	C	T	SNP	SCN9A	NM_002977	human	genbank	57_37b	-1	reviewed	silent	c.753	p.L251	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
SERTAD3	29946	genome.wustl.edu	37	19	40947651	40947651	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40947651	40947651	G	C	SNP	SERTAD3	NM_013368	human	genbank	57_37b	-1	reviewed	missense	c.337	p.Q113E	0.844	NULL	HMMPfam_SERTA	-	no_errors	
SHPK	23729	genome.wustl.edu	37	17	3518763	3518763	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3518763	3518763	G	C	SNP	SHPK	NM_013276	human	genbank	57_37b	-1	reviewed	missense	c.892	p.P298A	1.000	superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_FGGY_N	-	no_errors	
SHROOM2	357	genome.wustl.edu	37	X	9914857	9914857	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	9914857	9914857	C	T	SNP	SHROOM2	NM_001649	human	genbank	57_37b	+1	reviewed	silent	c.4731	p.H1577	1.000	HMMPfam_ASD2	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors	
SLITRK4	139065	genome.wustl.edu	37	X	142716453	142716453	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	142716453	142716453	G	C	SNP	SLITRK4	NM_173078	human	genbank	57_37b	-1	validated	nonsense	c.2472	p.Y824*	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors	
SLITRK4	139065	genome.wustl.edu	37	X	142718044	142718044	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	142718044	142718044	G	A	SNP	SLITRK4	NM_173078	human	genbank	57_37b	-1	validated	missense	c.881	p.T294I	0.992	NULL	HMMPfam_LRRNT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors	
SSR4	6748	genome.wustl.edu	37	X	153060173	153060173	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153060173	153060173	G	T	SNP	SSR4	NM_006280	human	genbank	57_37b	+1	reviewed	missense	c.31	p.A11S	1.000	HMMPfam_TRAP-delta	HMMPfam_TRAP-delta	-	no_errors	
TECTA	7007	genome.wustl.edu	37	11	121008612	121008612	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	121008612	121008612	G	C	SNP	TECTA	NM_005422	human	genbank	57_37b	+1	reviewed	missense	c.3424	p.V1142L	0.410	HMMSmart_SM00216,HMMPfam_VWD	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1,superfamily_EGF/Laminin	-	no_errors	
TEX11	56159	genome.wustl.edu	37	X	69749698	69749698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69749698	69749698	C	T	SNP	TEX11	NM_001003811	human	genbank	57_37b	-1	reviewed	missense	c.2717	p.S906N	0.000	NULL	superfamily_TPR-like,HMMPfam_SPO22,HMMSmart_SM00028	-	no_errors	
TG	7038	genome.wustl.edu	37	8	133912567	133912567	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133912567	133912567	C	T	SNP	TG	NM_003235	human	genbank	57_37b	+1	reviewed	missense	c.3416	p.S1139L	0.001	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00211	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578532	7578532	+	Missense_Mutation	SNP	A	T	T	rs28934873	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578532	7578532	A	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.398	p.M133K	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TRAF3IP1	26146	genome.wustl.edu	37	2	239264716	239264716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239264716	239264716	G	A	SNP	TRAF3IP1	NM_015650	human	genbank	57_37b	+1	validated	missense	c.1684	p.E562K	1.000	HMMPfam_MIP-T3	HMMPfam_MIP-T3	-	no_errors	
TROAP	10024	genome.wustl.edu	37	12	49717675	49717675	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49717675	49717675	T	C	SNP	TROAP	NM_005480	human	genbank	57_37b	+1	validated	silent	c.192	p.D64	0.002	NULL	NULL	-	no_errors	
UGT2B15	7366	genome.wustl.edu	37	4	69533861	69533861	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69533861	69533861	C	T	SNP	UGT2B15	NM_001076	human	genbank	57_37b	-1	validated	nonsense	c.770	p.W257*	1.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
UNC5D	137970	genome.wustl.edu	37	8	35584005	35584005	+	Missense_Mutation	SNP	G	G	T	rs77054671	byCluster;by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	35584005	35584005	G	T	SNP	UNC5D	NM_080872	human	genbank	57_37b	+1	validated	missense	c.1639	p.V547F	0.994	HMMPfam_ZU5,HMMSmart_SM00218	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-		
USH2A	7399	genome.wustl.edu	37	1	215848217	215848217	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215848217	215848217	G	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.13036	p.P4346T	0.002	HMMPfam_fn3,superfamily_Fibronectin type III	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
VIT	5212	genome.wustl.edu	37	2	37010495	37010497	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	37010495	37010497	AAG	-	DEL	VIT	NM_053276	human	genbank	57_37b	+1	provisional	in_frame_del	c.860_862	p.E289in_frame_del	1.000:0.995:1.000	NULL	superfamily_LCCL,HMMSmart_LCCL,HMMPfam_LCCL,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	(deletion:cds_exon[37010483,37010545])	no_errors	
YIPF7	285525	genome.wustl.edu	37	4	44626655	44626655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	44626655	44626655	C	T	SNP	YIPF7	NM_182592	human	genbank	57_37b	-1	validated	missense	c.643	p.V215I	1.000	HMMPfam_Yip1	HMMPfam_Yip1	-	no_errors	
ZNF777	27153	genome.wustl.edu	37	7	149128876	149128876	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149128876	149128876	C	T	SNP	ZNF777	NM_015694	human	genbank	57_37b	-1	validated	silent	c.2487	p.T829	1.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
