Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACTBL2	345651	genome.wustl.edu	37	5	56777892	56777892	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56777892	56777892	C	G	SNP	ACTBL2	NM_001017992	human	genbank	57_37b	-1	validated	missense	c.643	p.E215Q	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors	
APLP1	333	genome.wustl.edu	37	19	36365645	36365645	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36365645	36365645	G	A	SNP	APLP1	NM_001024807	human	genbank	57_37b	+1	reviewed	silent	c.1218	p.A406	1.000	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),PatternScan_A4_EXTRA,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein,HMMPfam_APP_amyloid,PatternScan_A4_INTRA	-	no_errors	
ARHGAP23	57636	genome.wustl.edu	37	17	36614485	36614485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36614485	36614485	C	T	SNP	ARHGAP23	ENST00000431231	human	ensembl	57_37b	+1	known	missense	c.203	p.S68L	0.997	superfamily_PDZ domain-like,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
C9orf125	84302	genome.wustl.edu	37	9	104238634	104238634	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104238634	104238634	G	T	SNP	C9orf125	NM_032342	human	genbank	57_37b	-1	provisional	missense	c.741	p.H247Q	1.000	NULL	NULL	-	no_errors	
CHD9	80205	genome.wustl.edu	37	16	53190227	53190227	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	53190227	53190227	T	G	SNP	CHD9	NM_025134	human	genbank	57_37b	+1	validated	missense	c.226	p.S76A	0.982	NULL	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_BRK	-	no_errors	
DRP2	1821	genome.wustl.edu	37	X	100497359	100497359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100497359	100497359	G	A	SNP	DRP2	NM_001939	human	genbank	57_37b	+1	reviewed	missense	c.874	p.V292M	1.000	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors	
ENSG00000169325	0	genome.wustl.edu	37	7	57268909	57268909	+	Missense_Mutation	SNP	G	G	T	rs10274803	byCluster;byFrequency;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	57268909	57268909	G	T	SNP	ENSG00000169325	ENST00000412912	human	ensembl	57_37b	-1	known	missense	c.319	p.P107T	1.000	superfamily_Galactose-binding domain-like,HMMPfam_Glyco_hydro_2_N	superfamily_Galactose-binding domain-like,HMMPfam_Glyco_hydro_2_N,PatternScan_MULTICOPPER_OXIDASE1	-		
ENSG00000224435	0	genome.wustl.edu	37	22	16346045	16346045	+	Splice_Site	SNP	T	T	C	rs56234788	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	16346045	16346045	T	C	SNP	ENSG00000224435	ENST00000426025	human	ensembl	57_37b	+1	known	splice_site	c.NULL	NULL	0.998	-	-	-		
ENSG00000246477	0	genome.wustl.edu	37	8	11178734	11178734	+	RNA	SNP	G	C	C	rs74842363	byCluster;byFrequency;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11178734	11178734	G	C	SNP	ENSG00000246477	ENST00000498997	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246791	0	genome.wustl.edu	37	8	134048135	134048135	+	RNA	SNP	C	C	A	rs77272183	byCluster;byFrequency;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	134048135	134048135	C	A	SNP	ENSG00000246791	ENST00000500114	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247101	0	genome.wustl.edu	37	17	43472321	43472321	+	RNA	SNP	A	G	G	rs114063948	byCluster;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43472321	43472321	A	G	SNP	ENSG00000247101	ENST00000502206	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
FANCC	2176	genome.wustl.edu	37	9	98011555	98011555	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98011555	98011555	C	A	SNP	FANCC	NM_000136	human	genbank	57_37b	-1	reviewed	missense	c.19	p.D7Y	0.005	HMMPfam_Fanconi_C	HMMPfam_Fanconi_C	-	no_errors	
GRIK5	2901	genome.wustl.edu	37	19	42566998	42566998	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42566998	42566998	A	T	SNP	GRIK5	NM_002088	human	genbank	57_37b	-1	reviewed	missense	c.254	p.I85N	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
HEATR7B2	133558	genome.wustl.edu	37	5	41058282	41058282	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41058282	41058282	G	A	SNP	HEATR7B2	NM_173489	human	genbank	57_37b	-1	validated	silent	c.639	p.H213	0.930	NULL	superfamily_ARM repeat	-	no_errors	
HIST1H2AK	8330	genome.wustl.edu	37	6	27805932	27805932	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27805932	27805932	C	T	SNP	HIST1H2AK	NM_003510	human	genbank	57_37b	-1	reviewed	silent	c.186	p.E62	1.000	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
HLA-H	3136	genome.wustl.edu	37	6	29857919	29857919	+	RNA	SNP	A	G	G	rs113875048	byCluster;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29857919	29857919	A	G	SNP	HLA-H	NR_001434	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001	-	-	-		
KHDRBS1	10657	genome.wustl.edu	37	1	32495940	32495942	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32495940	32495942	GAG	-	DEL	KHDRBS1	NM_006559	human	genbank	57_37b	+1	provisional	in_frame_del	c.424_426	p.E143in_frame_del	1.000:0.998:0.666	NULL	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1	(deletion:cds_exon[32495899,32496023])	no_errors	
KIAA0319L	79932	genome.wustl.edu	37	1	35936468	35936468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35936468	35936468	G	A	SNP	KIAA0319L	NM_024874	human	genbank	57_37b	-1	reviewed	missense	c.1109	p.S370L	1.000	HMMSmart_SM00089	HMMSmart_SM00089,superfamily_PKD domain	-	no_errors	
KIAA1267	284058	genome.wustl.edu	37	17	44110510	44110511	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	44110510	44110511	CA	-	DEL	KIAA1267	NM_015443	human	genbank	57_37b	-1	validated	frame_shift_del	c.2773_2772	p.C924fs	1.000:1.000	NULL	NULL	(deletion:cds_exon[44110446,44110558])	no_errors	
LOC100288406	0	genome.wustl.edu	37	12	92627	92627	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	92627	92627	C	T	SNP	LOC100288406	XM_002343141	human	genbank	57_37b	+1	model	silent	c.651	p.A217	0.002	NULL	NULL	-	no_errors	
LOC100289465	0	genome.wustl.edu	37	15	100038658	100038658	+	Missense_Mutation	SNP	G	C	C	rs1867095	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100038658	100038658	G	C	SNP	LOC100289465	XM_002343399	human	genbank	57_37b	-1	model	missense	c.599	p.S200W	0.000	NULL	NULL	-		
LOC100291044	0	genome.wustl.edu	37	10	3768994	3768994	+	Missense_Mutation	SNP	T	C	C	rs61831159	byCluster;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	3768994	3768994	T	C	SNP	LOC100291044	XM_002347112	human	genbank	57_37b	+1	model	missense	c.334	p.C112R	0.000	NULL	NULL	-		
LOC100293235	0	genome.wustl.edu	37	1	4325239	4325239	+	Silent	SNP	C	C	A	rs77859638	byCluster;byFrequency;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	4325239	4325239	C	A	SNP	LOC100293235	XM_002345375	human	genbank	57_37b	-1	model	silent	c.792	p.T264	0.010	NULL	PatternScan_TONB_DEPENDENT_REC_1	-		
LOC134505	134505	genome.wustl.edu	37	5	102368255	102368255	+	Missense_Mutation	SNP	T	T	C	rs1011454	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	102368255	102368255	T	C	SNP	LOC134505	XM_002342545	human	genbank	57_37b	+1	model	missense	c.176	p.V59A	0.999	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_""Winged helix"" DNA-binding domain"	-		
LRFN4	78999	genome.wustl.edu	37	11	66626234	66626234	+	Missense_Mutation	SNP	T	C	C	rs3741194	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66626234	66626234	T	C	SNP	LRFN4	NM_024036	human	genbank	57_37b	+1	validated	missense	c.1019	p.V340A	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-		
MIF4GD	57409	genome.wustl.edu	37	17	73264205	73264206	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73264205	73264206	AC	-	DEL	MIF4GD	NM_020679	human	genbank	57_37b	-1	validated	frame_shift_del	c.253_252	p.F85fs	1.000:0.995	HMMPfam_MIF4G,superfamily_ARM-type_fold	HMMPfam_MIF4G,superfamily_ARM-type_fold	(deletion:cds_exon[73264164,73264273])	no_errors	
MRGPRX3	117195	genome.wustl.edu	37	11	18158850	18158850	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18158850	18158850	C	T	SNP	MRGPRX3	NM_054031	human	genbank	57_37b	+1	reviewed	missense	c.101	p.T34M	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
NCRNA00085	147650	genome.wustl.edu	37	19	52197275	52197276	+	RNA	INS	-	-	AGAG	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52197275	52197276	-	AGAG	INS	NCRNA00085	NR_024330	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000:0.015	-	-	-	no_errors	
NCRNA00085	147650	genome.wustl.edu	37	19	52197329	52197330	+	RNA	INS	-	-	AG	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52197329	52197330	-	AG	INS	NCRNA00085	NR_024330	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	
ODZ4	26011	genome.wustl.edu	37	11	78498080	78498080	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78498080	78498080	G	T	SNP	ODZ4	NM_001098816	human	genbank	57_37b	-1	validated	missense	c.2228	p.T743N	1.000	HMMSmart_EGF,HMMPfam_EGF_2	HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196,superfamily_SSF101898,superfamily_TolB_C,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
OR5L1	219437	genome.wustl.edu	37	11	55579499	55579499	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55579499	55579499	G	T	SNP	OR5L1	NM_001004738	human	genbank	57_37b	+1	provisional	missense	c.557	p.S186I	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178917478	178917478	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.353	p.G118D	1.000	superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLEKHA2	59339	genome.wustl.edu	37	8	38809720	38809721	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38809720	38809721	-	C	INS	PLEKHA2	ENST00000420274	human	ensembl	57_37b	+1	known	frame_shift_ins	c.523_524	p.H176fs	0.486:0.798	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
RHOT2	89941	genome.wustl.edu	37	16	722548	722548	+	Silent	SNP	A	A	G	rs1128550	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	722548	722548	A	G	SNP	RHOT2	NM_138769	human	genbank	57_37b	+1	provisional	silent	c.1386	p.G462	0.035	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Miro	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro,HMMSmart_SM00174,superfamily_EF-hand,HMMPfam_EF_assoc_2,PatternScan_EF_HAND_1,HMMPfam_EF_assoc_1	-		
RNF212	285498	genome.wustl.edu	37	4	1087487	1087487	+	Nonsense_Mutation	SNP	G	G	A	rs60035268	byCluster;by1000genomes	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1087487	1087487	G	A	SNP	RNF212	ENST00000333673	human	ensembl	57_37b	-1	known	nonsense	c.562	p.Q188*	0.001	NULL	PatternScan_ZF_RING_1	-		
SFRP1	6422	genome.wustl.edu	37	8	41166156	41166156	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41166156	41166156	T	G	SNP	SFRP1	NM_003012	human	genbank	57_37b	-1	reviewed	missense	c.523	p.T175P	1.000	superfamily_Frizzled_Cys-rich	HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI,superfamily_TIMP_like,HMMSmart_C345C,HMMPfam_NTR	-	no_errors	
SPTB	6710	genome.wustl.edu	37	14	65266520	65266520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65266520	65266520	C	T	SNP	SPTB	NM_001024858	human	genbank	57_37b	-1	reviewed	missense	c.1009	p.V337I	0.995	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
SV2A	9900	genome.wustl.edu	37	1	149879682	149879682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149879682	149879682	C	T	SNP	SV2A	NM_014849	human	genbank	57_37b	-1	validated	missense	c.1456	p.V486M	0.992	HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_2	-	no_errors	
TAPT1	202018	genome.wustl.edu	37	4	16193020	16193020	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	16193020	16193020	G	A	SNP	TAPT1	NM_153365	human	genbank	57_37b	-1	reviewed	silent	c.576	p.S192	0.804	HMMPfam_DUF747	HMMPfam_DUF747	-	no_errors	
TMIGD2	126259	genome.wustl.edu	37	19	4294613	4294613	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4294613	4294613	C	T	SNP	TMIGD2	NM_144615	human	genbank	57_37b	-1	validated	nonsense	c.513	p.W171*	0.007	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors	
TPRX1	284355	genome.wustl.edu	37	19	48305622	48305622	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48305622	48305622	A	G	SNP	TPRX1	NM_198479	human	genbank	57_37b	-1	validated	missense	c.646	p.S216P	0.000	NULL	NULL	-	no_errors	
TRMT12	55039	genome.wustl.edu	37	8	125463552	125463552	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125463552	125463552	T	C	SNP	TRMT12	NM_017956	human	genbank	57_37b	+1	validated	silent	c.384	p.A128	0.856	NULL	superfamily_SSF53335,HMMPfam_Met_10	-	no_errors	
UBAP2L	9898	genome.wustl.edu	37	1	154227320	154227320	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154227320	154227320	C	T	SNP	UBAP2L	NM_014847	human	genbank	57_37b	+1	validated	silent	c.1863	p.F621	1.000	NULL	HMMPfam_UBA,HMMSmart_SM00165	-	no_errors	
ZDHHC1	29800	genome.wustl.edu	37	16	67432541	67432541	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67432541	67432541	A	C	SNP	ZDHHC1	NM_013304	human	genbank	57_37b	-1	validated	missense	c.749	p.L250R	0.998	NULL	HMMPfam_zf-DHHC	-	no_errors	
ZNF843	283933	genome.wustl.edu	37	16	31447564	31447564	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31447564	31447564	C	T	SNP	ZNF843	NM_001136509	human	genbank	57_37b	-1	provisional	missense	c.607	p.G203R	0.001	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors	
ZXDA	7789	genome.wustl.edu	37	X	57935544	57935544	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	57935544	57935544	C	A	SNP	ZXDA	NM_007156	human	genbank	57_37b	-1	reviewed	silent	c.1311	p.L437	0.996	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
