Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC8	6833	genome.wustl.edu	37	11	17428939	17428939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	17428939	17428939	G	A	SNP	ABCC8	NM_000352	human	genbank	57_37b	-1	reviewed	missense	c.2882	p.S961L	1.000	NULL	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
C11orf66	220004	genome.wustl.edu	37	11	61258004	61258004	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61258004	61258004	A	C	SNP	C11orf66	NM_145017	human	genbank	57_37b	+1	validated	missense	c.1240	p.N414H	0.000	NULL	NULL	-	no_errors	
CILP	8483	genome.wustl.edu	37	15	65491181	65491181	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65491181	65491181	G	T	SNP	CILP	NM_003613	human	genbank	57_37b	-1	reviewed	missense	c.1443	p.S481R	1.000	NULL	PatternScan_HEXAPEP_TRANSFERASES,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
CTU2	348180	genome.wustl.edu	37	16	88779032	88779032	+	Silent	SNP	G	G	C	rs2290896	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88779032	88779032	G	C	SNP	CTU2	NM_001012759	human	genbank	57_37b	+1	validated	silent	c.456	p.V152	1.000	superfamily_Adenine nucleotide alpha hydrolases-like	superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_DUF2392	-		
CYP7B1	9420	genome.wustl.edu	37	8	65527680	65527680	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	65527680	65527680	G	A	SNP	CYP7B1	NM_004820	human	genbank	57_37b	-1	reviewed	silent	c.960	p.D320	1.000	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450	-	no_errors	
DCAF4L1	285429	genome.wustl.edu	37	4	41984183	41984183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	41984183	41984183	G	A	SNP	DCAF4L1	NM_001029955	human	genbank	57_37b	+1	validated	missense	c.374	p.R125Q	1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320	-	no_errors	
DGKG	1608	genome.wustl.edu	37	3	185986591	185986591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	185986591	185986591	G	A	SNP	DGKG	NM_001346	human	genbank	57_37b	-1	reviewed	missense	c.1115	p.T372M	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors	
EHF	26298	genome.wustl.edu	37	11	34664214	34664214	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	34664214	34664214	C	G	SNP	EHF	NM_012153	human	genbank	57_37b	+1	reviewed	missense	c.37	p.P13A	1.000	superfamily_SAM/Pointed domain	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	-	no_errors	
FMR1NB	158521	genome.wustl.edu	37	X	147106385	147106385	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147106385	147106385	C	T	SNP	FMR1NB	NM_152578	human	genbank	57_37b	+1	validated	silent	c.633	p.S211	0.044	NULL	NULL	-	no_errors	
FREM1	158326	genome.wustl.edu	37	9	14851595	14851595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	14851595	14851595	G	A	SNP	FREM1	NM_144966	human	genbank	57_37b	-1	validated	missense	c.839	p.A280V	0.357	NULL	superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors	
GLB1L3	112937	genome.wustl.edu	37	11	134179562	134179562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	134179562	134179562	C	T	SNP	GLB1L3	NM_001080407	human	genbank	57_37b	+1	validated	missense	c.1004	p.S335F	1.000	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	-	no_errors	
GNB3	2784	genome.wustl.edu	37	12	6952161	6952161	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6952161	6952161	C	T	SNP	GNB3	NM_002075	human	genbank	57_37b	+1	reviewed	nonsense	c.124	p.R42*	1.000	superfamily_WD40_like	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
HLA-E	3133	genome.wustl.edu	37	6	30459165	30459165	+	Missense_Mutation	SNP	C	C	T	rs115331960	by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30459165	30459165	C	T	SNP	HLA-E	NM_005516	human	genbank	57_37b	+1	reviewed	missense	c.862	p.P288S	0.553	HMMPfam_C1-set,superfamily_SSF48726,HMMSmart_IGc1	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,HMMPfam_C1-set,superfamily_SSF48726,HMMSmart_IGc1,PatternScan_IG_MHC	-		
IRF2BP2	359948	genome.wustl.edu	37	1	234743301	234743302	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	234743301	234743302	-	A	INS	IRF2BP2	NM_182972	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1346_1345	p.S449fs	1.000:1.000	NULL	NULL	-	no_errors	
KDM4C	23081	genome.wustl.edu	37	9	6793072	6793072	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	6793072	6793072	G	A	SNP	KDM4C	NM_015061	human	genbank	57_37b	+1	reviewed	silent	c.84	p.E28	0.431	HMMSmart_SM00545,HMMPfam_JmjN	HMMSmart_SM00545,HMMPfam_JmjN,HMMSmart_SM00558,HMMPfam_JmjC,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT	-	no_errors	
KIAA1486	57624	genome.wustl.edu	37	2	226273793	226273793	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	226273793	226273793	G	A	SNP	KIAA1486	NM_020864	human	genbank	57_37b	+1	validated	missense	c.197	p.R66Q	1.000	NULL	NULL	-	no_errors	
KIAA2022	340533	genome.wustl.edu	37	X	73963301	73963301	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73963301	73963301	A	-	DEL	KIAA2022	NM_001008537	human	genbank	57_37b	-1	validated	frame_shift_del	c.1091	p.F364fs	1.000	NULL	NULL	(deletion:cds_exon[73959935,73964312])	no_errors	
KIF19	124602	genome.wustl.edu	37	17	72350402	72350402	+	Missense_Mutation	SNP	G	G	A	rs2271534	byCluster;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72350402	72350402	G	A	SNP	KIF19	NM_153209	human	genbank	57_37b	+1	validated	missense	c.2410	p.A804T	0.117	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-		
LDB2	9079	genome.wustl.edu	37	4	16504298	16504298	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	16504298	16504298	A	T	SNP	LDB2	NM_001290	human	genbank	57_37b	-1	validated	missense	c.1090	p.S364T	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors	
LOC100288073	0	genome.wustl.edu	37	4	165110289	165110289	+	RNA	SNP	G	G	C	rs12186277	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	165110289	165110289	G	C	SNP	LOC100288073	XR_078312	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LOC100288788	0	genome.wustl.edu	37	X	65176943	65176943	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	65176943	65176943	T	C	SNP	LOC100288788	XM_002343822	human	genbank	57_37b	-1	model	silent	c.96	p.G32	0.998	HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD	HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD	-	no_errors	
LOC645490	645490	genome.wustl.edu	37	11	20596552	20596552	+	Missense_Mutation	SNP	T	T	A	rs75407164	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20596552	20596552	T	A	SNP	LOC645490	XM_928515	human	genbank	57_37b	+1	model	missense	c.1014	p.D338E	1.000	NULL	HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_HMG_box	-		
LOC729020	729020	genome.wustl.edu	37	10	105006118	105006118	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105006118	105006118	G	T	SNP	LOC729020	NM_001143909	human	genbank	57_37b	+1	provisional	missense	c.365	p.G122V	0.998	superfamily_RibP_bind_barrel,HMMPfam_Ribul_P_3_epim	superfamily_RibP_bind_barrel,HMMPfam_Ribul_P_3_epim,PatternScan_RIBUL_P_3_EPIMER_1	-	no_errors	
MAP2K7	5609	genome.wustl.edu	37	19	7975586	7975586	+	Silent	SNP	C	T	T	rs2303701	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7975586	7975586	C	T	SNP	MAP2K7	NM_145185	human	genbank	57_37b	+1	reviewed	silent	c.573	p.D191	0.594	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-		
MST1P9	0	genome.wustl.edu	37	1	17083652	17083652	+	RNA	SNP	C	C	T	rs113710576	byCluster	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17083652	17083652	C	T	SNP	MST1P9	NR_002729	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.765	-	-	-		
MST1P9	0	genome.wustl.edu	37	1	17084730	17084730	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17084730	17084730	G	-	DEL	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	frame_shift_del	c.1573	p.R525fs	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	(deletion:cds_exon[17084711,17084788])	no_errors	
NRBP1	29959	genome.wustl.edu	37	2	27656951	27656951	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27656951	27656951	G	-	DEL	NRBP1	NM_013392	human	genbank	57_37b	+1	validated	frame_shift_del	c.429	p.A144fs	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase	(deletion:cds_exon[27656856,27656957])	no_errors	
OR56A1	120796	genome.wustl.edu	37	11	6048841	6048841	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6048841	6048841	G	A	SNP	OR56A1	NM_001001917	human	genbank	57_37b	-1	validated	missense	c.94	p.H32Y	0.930	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PARP12	64761	genome.wustl.edu	37	7	139726015	139726015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	139726015	139726015	C	G	SNP	PARP12	NM_022750	human	genbank	57_37b	-1	provisional	missense	c.1762	p.G588R	1.000	superfamily_ADP-ribosylation,HMMPfam_PARP	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger,superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors	
PGA5	5222	genome.wustl.edu	37	11	61017206	61017206	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61017206	61017206	C	G	SNP	PGA5	NM_014224	human	genbank	57_37b	+1	provisional	missense	c.839	p.T280S	1.000	superfamily_Pept_Aspartic,HMMPfam_Asp,PatternScan_ASP_PROTEASE	superfamily_Pept_Aspartic,HMMPfam_A1_Propeptide,HMMPfam_Asp,PatternScan_ASP_PROTEASE	-	no_errors	
REV1	51455	genome.wustl.edu	37	2	100019354	100019354	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	100019354	100019354	G	A	SNP	REV1	NM_016316	human	genbank	57_37b	-1	reviewed	silent	c.3382	p.L1128	0.966	NULL	HMMPfam_BRCT,superfamily_BRCT domain,HMMSmart_SM00292,superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain	-	no_errors	
RSBN1L	222194	genome.wustl.edu	37	7	77379331	77379331	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	77379331	77379331	T	G	SNP	RSBN1L	NM_198467	human	genbank	57_37b	+1	validated	missense	c.1294	p.L432V	0.992	NULL	NULL	-	no_errors	
SNX25	83891	genome.wustl.edu	37	4	186274637	186274637	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186274637	186274637	A	T	SNP	SNX25	NM_031953	human	genbank	57_37b	+1	validated	splice_site	c.1975-2	e14-2	1.000	-	-	-	no_errors	
SOCS7	30837	genome.wustl.edu	37	17	36522192	36522192	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36522192	36522192	C	T	SNP	SOCS7	NM_014598	human	genbank	57_37b	+1	validated	silent	c.1083	p.P361	0.997	NULL	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors	
SPANXC	64663	genome.wustl.edu	37	X	140335783	140335783	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	140335783	140335783	C	T	SNP	SPANXC	NM_022661	human	genbank	57_37b	-1	reviewed	missense	c.161	p.R54H	0.001	HMMPfam_SPAN-X	HMMPfam_SPAN-X	-	no_errors	
SPNS1	83985	genome.wustl.edu	37	16	28986519	28986519	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28986519	28986519	C	G	SNP	SPNS1	NM_001142448	human	genbank	57_37b	+1	validated	missense	c.47	p.P16R	0.998	NULL	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors	
SRCAP	10847	genome.wustl.edu	37	16	30722123	30722123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30722123	30722123	C	T	SNP	SRCAP	NM_006662	human	genbank	57_37b	+1	validated	missense	c.1183	p.H395Y	1.000	NULL	HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_AT_hook,HMMSmart_SM00384	-	no_errors	
TMEM233	0	genome.wustl.edu	37	12	120031840	120031840	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120031840	120031840	G	A	SNP	TMEM233	NM_001136534	human	genbank	57_37b	+1	provisional	splice_site	c.186+1	e1+1	1.000	-	-	-	no_errors	
TMEM8A	58986	genome.wustl.edu	37	16	427516	427516	+	Silent	SNP	T	T	C	rs11649031	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	427516	427516	T	C	SNP	TMEM8A	NM_021259	human	genbank	57_37b	-1	validated	silent	c.369	p.V123	0.199	NULL	PatternScan_EGF_1,PatternScan_EGF_2	-		
TMPRSS11B	132724	genome.wustl.edu	37	4	69094493	69094493	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69094493	69094493	A	T	SNP	TMPRSS11B	NM_182502	human	genbank	57_37b	-1	validated	silent	c.1056	p.A352	0.998	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_SEA domain,HMMPfam_SEA,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors	
UNK	85451	genome.wustl.edu	37	17	73819525	73819525	+	Silent	SNP	C	C	T	rs8078208	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73819525	73819525	C	T	SNP	UNK	NM_001080419	human	genbank	57_37b	+1	provisional	silent	c.2427	p.S809	0.017	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger	-		
UPLP	0	genome.wustl.edu	37	7	102279621	102279621	+	Missense_Mutation	SNP	C	C	T	rs56365279	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	102279621	102279621	C	T	SNP	UPLP	NM_001114403	human	genbank	57_37b	-1	provisional	missense	c.511	p.E171K	0.088	NULL	NULL	-		
WDR90	197335	genome.wustl.edu	37	16	705360	705360	+	Missense_Mutation	SNP	T	C	C	rs3803697	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	705360	705360	T	C	SNP	WDR90	NM_145294	human	genbank	57_37b	+1	provisional	missense	c.1610	p.V537A	0.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-		
WDR90	197335	genome.wustl.edu	37	16	717523	717523	+	Silent	SNP	G	G	T	rs3752493	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	717523	717523	G	T	SNP	WDR90	NM_145294	human	genbank	57_37b	+1	provisional	silent	c.5181	p.P1727	0.002	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-		
WIF1	11197	genome.wustl.edu	37	12	65460458	65460458	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	65460458	65460458	G	C	SNP	WIF1	NM_007191	human	genbank	57_37b	-1	reviewed	missense	c.693	p.I231M	1.000	HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	HMMSmart_WIF,HMMPfam_WIF,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF	-	no_errors	
YIPF7	285525	genome.wustl.edu	37	4	44626756	44626756	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	44626756	44626756	A	T	SNP	YIPF7	NM_182592	human	genbank	57_37b	-1	validated	missense	c.542	p.I181N	0.999	HMMPfam_Yip1	HMMPfam_Yip1	-	no_errors	
ZNF486	90649	genome.wustl.edu	37	19	20307906	20307906	+	Silent	SNP	G	G	T	rs112152275	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20307906	20307906	G	T	SNP	ZNF486	NM_052852	human	genbank	57_37b	+1	provisional	silent	c.387	p.V129	0.982	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
ZNF773	374928	genome.wustl.edu	37	19	58011421	58011421	+	Silent	SNP	G	G	T	rs12463137	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58011421	58011421	G	T	SNP	ZNF773	ENST00000332030	human	ensembl	57_37b	+1	known	silent	c.42	p.S14	0.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	-		
