Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA3	21	genome.wustl.edu	37	16	2335631	2335631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2335631	2335631	C	T	SNP	ABCA3	NM_001089	human	genbank	57_37b	-1	reviewed	missense	c.3295	p.D1099N	0.980	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCA3	21	genome.wustl.edu	37	16	2336930	2336930	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2336930	2336930	C	G	SNP	ABCA3	NM_001089	human	genbank	57_37b	-1	reviewed	missense	c.3043	p.E1015Q	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
ACVR1	90	genome.wustl.edu	37	2	158636987	158636987	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	158636987	158636987	C	T	SNP	ACVR1	NM_001105	human	genbank	57_37b	-1	reviewed	missense	c.193	p.V65I	0.995	HMMPfam_Activin_recp,superfamily_SSF57302	HMMPfam_Activin_recp,superfamily_SSF57302,HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ARFGEF1	10565	genome.wustl.edu	37	8	68208734	68208734	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	68208734	68208734	G	A	SNP	ARFGEF1	NM_006421	human	genbank	57_37b	-1	reviewed	nonsense	c.571	p.Q191*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981	-	no_errors	
ARSK	153642	genome.wustl.edu	37	5	94939216	94939216	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	94939216	94939216	C	G	SNP	ARSK	NM_198150	human	genbank	57_37b	+1	validated	missense	c.1597	p.P533A	0.000	NULL	PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	
ASTL	431705	genome.wustl.edu	37	2	96795705	96795705	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96795705	96795705	G	C	SNP	ASTL	NM_001002036	human	genbank	57_37b	-1	validated	missense	c.732	p.S244R	0.976	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Astacin"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin"	-	no_errors	
ASXL1	171023	genome.wustl.edu	37	20	31022690	31022690	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31022690	31022690	A	G	SNP	ASXL1	NM_015338	human	genbank	57_37b	+1	reviewed	silent	c.2175	p.R725	0.004	NULL	NULL	-	no_errors	
ATP4A	495	genome.wustl.edu	37	19	36046578	36046578	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36046578	36046578	T	G	SNP	ATP4A	NM_000704	human	genbank	57_37b	-1	reviewed	missense	c.2006	p.K669T	1.000	superfamily_SSF81665,superfamily_SSF56784,HMMPfam_Hydrolase	HMMPfam_H-K_ATPase_N,HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors	
ATXN2	6311	genome.wustl.edu	37	12	111926531	111926531	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	111926531	111926531	T	C	SNP	ATXN2	NM_002973	human	genbank	57_37b	-1	reviewed	silent	c.2469	p.R823	1.000	NULL	superfamily_Sm-like ribonucleoproteins,HMMPfam_LsmAD,HMMPfam_PAM2	-	no_errors	
AUP1	550	genome.wustl.edu	37	2	74754449	74754449	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74754449	74754449	C	G	SNP	AUP1	NM_181575	human	genbank	57_37b	-1	reviewed	missense	c.1003	p.E335Q	1.000	HMMPfam_CUE,HMMSmart_CUE	HMMSmart_PlsC,HMMPfam_CUE,HMMSmart_CUE	-	no_errors	
BIRC6	57448	genome.wustl.edu	37	2	32738164	32738164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32738164	32738164	G	A	SNP	BIRC6	NM_016252	human	genbank	57_37b	+1	reviewed	missense	c.10511	p.S3504N	1.000	NULL	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors	
C10orf12	26148	genome.wustl.edu	37	10	98743239	98743239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	98743239	98743239	G	A	SNP	C10orf12	NM_015652	human	genbank	57_37b	+1	predicted	missense	c.2092	p.A698T	0.000	NULL	NULL	-	no_errors	
C12orf51	283450	genome.wustl.edu	37	12	112607429	112607429	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112607429	112607429	C	G	SNP	C12orf51	NM_001109662	human	genbank	57_37b	-1	provisional	missense	c.10820	p.C3607S	1.000	superfamily_Hect E3 ligase catalytic domain	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
C16orf62	57020	genome.wustl.edu	37	16	19711758	19711758	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19711758	19711758	C	G	SNP	C16orf62	NM_020314	human	genbank	57_37b	+1	predicted	missense	c.2852	p.T951R	0.213	NULL	NULL	-	no_errors	
C19orf6	91304	genome.wustl.edu	37	19	1012120	1012120	+	Silent	SNP	G	A	A	rs7145	byCluster;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1012120	1012120	G	A	SNP	C19orf6	NM_001033026	human	genbank	57_37b	-1	validated	silent	c.786	p.Y262	0.852	HMMPfam_Membralin	HMMPfam_Membralin	-		
CA9	768	genome.wustl.edu	37	9	35675543	35675543	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35675543	35675543	C	G	SNP	CA9	NM_001216	human	genbank	57_37b	+1	reviewed	missense	c.412	p.Q138E	0.996	NULL	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors	
CAMTA2	23125	genome.wustl.edu	37	17	4872988	4872988	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4872988	4872988	C	T	SNP	CAMTA2	NM_015099	human	genbank	57_37b	-1	validated	silent	c.3198	p.R1066	0.974	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Ank,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors	
CASQ2	845	genome.wustl.edu	37	1	116280890	116280890	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	116280890	116280890	C	G	SNP	CASQ2	NM_001232	human	genbank	57_37b	-1	reviewed	missense	c.487	p.D163H	1.000	HMMPfam_Calsequestrin,superfamily_Thioredoxin-like	HMMPfam_Calsequestrin,PatternScan_CALSEQUESTRIN_1,superfamily_Thioredoxin-like,PatternScan_CALSEQUESTRIN_2	-	no_errors	
CATSPERG	57828	genome.wustl.edu	37	19	38851193	38851193	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38851193	38851193	T	G	SNP	CATSPERG	NM_021185	human	genbank	57_37b	+1	validated	missense	c.1673	p.V558G	0.000	NULL	NULL	-	no_errors	
CCDC141	285025	genome.wustl.edu	37	2	179702066	179702066	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179702066	179702066	A	C	SNP	CCDC141	NM_173648	human	genbank	57_37b	-1	provisional	missense	c.2155	p.F719V	0.001	NULL	HMMPfam_I-set	-	no_errors	
CECR2	27443	genome.wustl.edu	37	22	18022097	18022097	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18022097	18022097	T	C	SNP	CECR2	ENST00000400573	human	ensembl	57_37b	+1	known	silent	c.2199	p.P733	0.951	NULL	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
CHD7	55636	genome.wustl.edu	37	8	61729034	61729039	+	In_Frame_Del	DEL	CAGGGC	CAGGGC	-	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	CAGGGC	CAGGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	61729034	61729039	CAGGGC	-	DEL	CHD7	NM_017780	human	genbank	57_37b	+1	reviewed	in_frame_del	c.2587_2592	p.GQ864in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_SM00298	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	(deletion:cds_exon[61728946,61729060])	no_errors	
CNKSR3	154043	genome.wustl.edu	37	6	154754627	154754627	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	154754627	154754627	C	T	SNP	CNKSR3	NM_173515	human	genbank	57_37b	-1	validated	silent	c.522	p.A174	0.683	HMMPfam_CRIC_ras_sig	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,HMMPfam_CRIC_ras_sig,HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_DUF1170	-	no_errors	
COL19A1	1310	genome.wustl.edu	37	6	70866053	70866053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70866053	70866053	G	T	SNP	COL19A1	NM_001858	human	genbank	57_37b	+1	reviewed	missense	c.2114	p.G705V	1.000	NULL	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors	
CSPG5	10675	genome.wustl.edu	37	3	47618393	47618393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47618393	47618393	C	T	SNP	CSPG5	NM_006574	human	genbank	57_37b	-1	validated	missense	c.1123	p.D375N	1.000	HMMSmart_EGF	HMMPfam_Chon_Sulph_att,HMMSmart_EGF,HMMPfam_Neural_ProG_Cyt	-	no_errors	
DLC1	10395	genome.wustl.edu	37	8	12956886	12956886	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12956886	12956886	C	G	SNP	DLC1	NM_182643	human	genbank	57_37b	-1	reviewed	missense	c.2960	p.G987A	1.000	NULL	HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors	
DPYSL4	10570	genome.wustl.edu	37	10	134014449	134014449	+	Missense_Mutation	SNP	A	A	G	rs115891804	by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	134014449	134014449	A	G	SNP	DPYSL4	NM_006426	human	genbank	57_37b	+1	validated	missense	c.1072	p.I358V	0.062	superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	-		
ENSG00000118976	0	genome.wustl.edu	37	12	3948638	3948638	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	3948638	3948638	T	A	SNP	ENSG00000118976	ENST00000237841	human	ensembl	57_37b	+1	known	silent	c.171	p.S57	0.914	superfamily_SSF54001,HMMPfam_OTU	superfamily_SSF54001,HMMPfam_OTU	-	no_errors	
ENSG00000234532	0	genome.wustl.edu	37	16	84228199	84228199	+	Missense_Mutation	SNP	G	T	T	rs11864937	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84228199	84228199	G	T	SNP	ENSG00000234532	ENST00000447787	human	ensembl	57_37b	-1	known	missense	c.164	p.S55Y	0.000	NULL	NULL	-		
ENSG00000245087	0	genome.wustl.edu	37	6	167360024	167360024	+	RNA	SNP	C	C	T	rs1077453	byCluster;byFrequency;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	167360024	167360024	C	T	SNP	ENSG00000245087	ENST00000501749	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.003	-	-	-		
ENSG00000247252	0	genome.wustl.edu	37	2	101627312	101627312	+	RNA	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	101627312	101627312	C	G	SNP	ENSG00000247252	ENST00000499501	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	
FAM166B	730112	genome.wustl.edu	37	9	35562393	35562394	+	Frame_Shift_Ins	INS	-	-	TAGT	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35562393	35562394	-	TAGT	INS	FAM166B	ENST00000399742	human	ensembl	57_37b	-1	known	frame_shift_ins	c.723_722	p.Y241fs	0.944:0.998	HMMPfam_DUF2475	HMMPfam_DUF2475	-	no_errors	
FAM49B	51571	genome.wustl.edu	37	8	130867866	130867866	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	130867866	130867866	A	C	SNP	FAM49B	NM_016623	human	genbank	57_37b	-1	predicted	missense	c.429	p.D143E	1.000	HMMPfam_DUF1394	HMMPfam_DUF1394	-	no_errors	
FAT1	2195	genome.wustl.edu	37	4	187627851	187627851	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	187627851	187627851	T	C	SNP	FAT1	NM_005245	human	genbank	57_37b	-1	reviewed	missense	c.3131	p.K1044R	0.954	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CADHERIN_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors	
FBXW7	55294	genome.wustl.edu	37	4	153247366	153247366	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	153247366	153247366	C	T	SNP	FBXW7	NM_033632	human	genbank	57_37b	-1	reviewed	missense	c.1436	p.R479Q	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	superfamily_WD40 repeat-like,superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
FBXW8	26259	genome.wustl.edu	37	12	117465850	117465850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	117465850	117465850	G	A	SNP	FBXW8	NM_153348	human	genbank	57_37b	+1	reviewed	missense	c.1670	p.R557H	0.970	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	
GPR128	84873	genome.wustl.edu	37	3	100354667	100354667	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	100354667	100354667	T	G	SNP	GPR128	NM_032787	human	genbank	57_37b	+1	validated	silent	c.594	p.P198	0.008	NULL	PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors	
GREB1	9687	genome.wustl.edu	37	2	11773164	11773164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	11773164	11773164	G	A	SNP	GREB1	NM_014668	human	genbank	57_37b	+1	reviewed	missense	c.4966	p.V1656I	0.203	NULL	NULL	-	no_errors	
HRAS	3265	genome.wustl.edu	37	11	534227	534227	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	534227	534227	G	A	SNP	HRAS	NM_001130442	human	genbank	57_37b	-1	reviewed	silent	c.96	p.Y32	0.951	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	-	no_errors	
KCNJ15	3772	genome.wustl.edu	37	21	39671648	39671648	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	39671648	39671648	G	T	SNP	KCNJ15	NM_002243	human	genbank	57_37b	+1	reviewed	missense	c.465	p.L155F	0.988	superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-	no_errors	
KCNN3	3782	genome.wustl.edu	37	1	154841540	154841540	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154841540	154841540	C	G	SNP	KCNN3	NM_002249	human	genbank	57_37b	-1	reviewed	missense	c.901	p.E301Q	1.000	HMMPfam_SK_channel	HMMPfam_SK_channel,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_Small-conductance potassium channel,HMMPfam_CaMBD	-	no_errors	
KHDRBS1	10657	genome.wustl.edu	37	1	32502510	32502510	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32502510	32502510	G	A	SNP	KHDRBS1	NM_006559	human	genbank	57_37b	+1	provisional	splice_site	c.772-1	e5-1	1.000	-	-	-	no_errors	
KIAA1147	57189	genome.wustl.edu	37	7	141362534	141362534	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141362534	141362534	G	C	SNP	KIAA1147	NM_001080392	human	genbank	57_37b	-1	provisional	missense	c.1290	p.D430E	1.000	HMMPfam_DUF2347	HMMPfam_DUF2347	-	no_errors	
LOC100288718	0	genome.wustl.edu	37	11	290891	290891	+	Missense_Mutation	SNP	T	C	C	rs72636977	byCluster;byFrequency;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	290891	290891	T	C	SNP	LOC100288718	XM_002343044	human	genbank	57_37b	-1	model	missense	c.268	p.I90V	0.000	NULL	NULL	-		
LOC100289169	0	genome.wustl.edu	37	16	29063669	29063669	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29063669	29063669	C	G	SNP	LOC100289169	XM_002343436	human	genbank	57_37b	+1	model	missense	c.271	p.L91V	0.019	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors	
MLPH	79083	genome.wustl.edu	37	2	238449023	238449023	+	Missense_Mutation	SNP	T	T	C	rs3817363	byCluster;byFrequency;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	238449023	238449023	T	C	SNP	MLPH	ENST00000415753	human	ensembl	57_37b	+1	known	missense	c.199	p.C67R	0.235	NULL	NULL	-		
MRPL52	122704	genome.wustl.edu	37	14	23302667	23302667	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23302667	23302667	A	G	SNP	MRPL52	NM_178336	human	genbank	57_37b	+1	reviewed	silent	c.198	p.R66	0.995	NULL	NULL	-	no_errors	
MRPS7	51081	genome.wustl.edu	37	17	73261941	73261941	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73261941	73261941	G	A	SNP	MRPS7	NM_015971	human	genbank	57_37b	+1	reviewed	silent	c.666	p.R222	0.899	superfamily_Ribosomal protein S7,HMMPfam_Ribosomal_S7	superfamily_Ribosomal protein S7,HMMPfam_Ribosomal_S7	-	no_errors	
MYH7B	57644	genome.wustl.edu	37	20	33575611	33575611	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33575611	33575611	G	C	SNP	MYH7B	NM_020884	human	genbank	57_37b	+1	validated	missense	c.1436	p.R479P	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,PatternScan_THIOL_PROTEASE_HIS,superfamily_tRNA-binding arm,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors	
NWD1	284434	genome.wustl.edu	37	19	16860842	16860842	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16860842	16860842	C	T	SNP	NWD1	NM_001007525	human	genbank	57_37b	+1	validated	silent	c.984	p.H328	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
OR6C2	341416	genome.wustl.edu	37	12	55846550	55846550	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55846550	55846550	A	G	SNP	OR6C2	NM_054105	human	genbank	57_37b	+1	provisional	missense	c.553	p.I185V	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PARP9	83666	genome.wustl.edu	37	3	122274300	122274300	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122274300	122274300	T	-	DEL	PARP9	NM_031458	human	genbank	57_37b	-1	validated	frame_shift_del	c.823	p.I275fs	1.000	superfamily_Macro domain-like	superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP	(deletion:cds_exon[122274133,122274968])	no_errors	
PAX3	5077	genome.wustl.edu	37	2	223065949	223065949	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	223065949	223065949	T	C	SNP	PAX3	NM_181459	human	genbank	57_37b	-1	reviewed	missense	c.1462	p.I488V	0.908	NULL	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
PDE3B	5140	genome.wustl.edu	37	11	14853233	14853233	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	14853233	14853233	C	G	SNP	PDE3B	NM_000922	human	genbank	57_37b	+1	validated	missense	c.2004	p.D668E	0.063	superfamily_HD-domain/PDEase-like	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PLEKHG4B	153478	genome.wustl.edu	37	5	182269	182269	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	182269	182269	C	T	SNP	PLEKHG4B	NM_052909	human	genbank	57_37b	+1	validated	missense	c.3647	p.S1216F	0.672	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors	
POLR1A	25885	genome.wustl.edu	37	2	86327172	86327172	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86327172	86327172	G	A	SNP	POLR1A	NM_015425	human	genbank	57_37b	-1	validated	silent	c.201	p.C67	0.985	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_1,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5	-	no_errors	
POLR1A	25885	genome.wustl.edu	37	2	86327220	86327220	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86327220	86327220	G	A	SNP	POLR1A	NM_015425	human	genbank	57_37b	-1	validated	silent	c.153	p.Y51	0.794	HMMPfam_RNA_pol_Rpb1_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors	
PPFIA2	8499	genome.wustl.edu	37	12	81688650	81688661	+	In_Frame_Del	DEL	GGAAACCATCTC	GGAAACCATCTC	-	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	GGAAACCATCTC	GGAAACCATCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	81688650	81688661	GGAAACCATCTC	-	DEL	PPFIA2	NM_003625	human	genbank	57_37b	-1	reviewed	in_frame_del	c.2889_2878	p.EMVS960in_frame_del	0.970:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	(deletion:cds_exon[81688614,81688814])	no_errors	
PRDX5	25824	genome.wustl.edu	37	11	64085785	64085785	+	Missense_Mutation	SNP	A	A	G	rs7938623	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64085785	64085785	A	G	SNP	PRDX5	NM_012094	human	genbank	57_37b	+1	reviewed	missense	c.98	p.Y33C	0.000	NULL	superfamily_Thioredoxin-like,HMMPfam_Redoxin	-		
PRODH2	58510	genome.wustl.edu	37	19	36298022	36298022	+	Missense_Mutation	SNP	T	T	C	rs73594420	byCluster;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36298022	36298022	T	C	SNP	PRODH2	NM_021232	human	genbank	57_37b	-1	reviewed	missense	c.827	p.N276S	0.006	HMMPfam_Pro_dh,superfamily_SSF51730	HMMPfam_Pro_dh,superfamily_SSF51730	-		
RASSF4	83937	genome.wustl.edu	37	10	45479434	45479434	+	Silent	SNP	G	G	A	rs871043	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	45479434	45479434	G	A	SNP	RASSF4	ENST00000334940	human	ensembl	57_37b	+1	known	silent	c.273	p.P91	0.000	NULL	HMMSmart_RA,HMMPfam_RA	-		
RBM23	55147	genome.wustl.edu	37	14	23374450	23374450	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23374450	23374450	G	A	SNP	RBM23	NM_001077351	human	genbank	57_37b	-1	reviewed	silent	c.579	p.R193	0.983	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
RGL1	23179	genome.wustl.edu	37	1	183816895	183816895	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	183816895	183816895	C	T	SNP	RGL1	NM_015149	human	genbank	57_37b	+1	validated	silent	c.439	p.L147	0.990	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314	-	no_errors	
RMND1	55005	genome.wustl.edu	37	6	151748625	151748625	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151748625	151748625	T	A	SNP	RMND1	NM_017909	human	genbank	57_37b	-1	validated	silent	c.822	p.I274	0.027	HMMPfam_DUF155	HMMPfam_DUF155	-	no_errors	
SGK3	23678	genome.wustl.edu	37	8	67748219	67748219	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	67748219	67748219	T	C	SNP	SGK3	NM_001033578	human	genbank	57_37b	+1	reviewed	silent	c.651	p.N217	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
SH3BP1	23616	genome.wustl.edu	37	22	38039128	38039128	+	Silent	SNP	A	A	G	rs74516928	byCluster;byFrequency;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38039128	38039128	A	G	SNP	SH3BP1	NM_018957	human	genbank	57_37b	+1	validated	silent	c.420	p.K140	1.000	HMMSmart_SM00721,HMMPfam_BAR	HMMSmart_SM00721,HMMPfam_BAR,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-		
SLC12A4	6560	genome.wustl.edu	37	16	67995581	67995581	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67995581	67995581	G	C	SNP	SLC12A4	NM_005072	human	genbank	57_37b	-1	validated	missense	c.239	p.S80W	1.000	NULL	HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1	-	no_errors	
SLC27A4	10999	genome.wustl.edu	37	9	131115713	131115713	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131115713	131115713	A	G	SNP	SLC27A4	NM_005094	human	genbank	57_37b	+1	provisional	missense	c.1217	p.N406S	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_LIPOCALIN,PatternScan_AMP_BINDING	-	no_errors	
SLC2A4	6517	genome.wustl.edu	37	17	7187850	7187850	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7187850	7187850	T	C	SNP	SLC2A4	NM_001042	human	genbank	57_37b	+1	reviewed	silent	c.774	p.A258	0.732	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors	
SLC5A6	8884	genome.wustl.edu	37	2	27428252	27428252	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27428252	27428252	C	G	SNP	SLC5A6	NM_021095	human	genbank	57_37b	-1	validated	missense	c.700	p.V234L	0.946	HMMPfam_SSF	PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors	
SLCO1C1	53919	genome.wustl.edu	37	12	20885886	20885886	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	20885886	20885886	G	C	SNP	SLCO1C1	NM_017435	human	genbank	57_37b	+1	reviewed	silent	c.1230	p.G410	0.998	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors	
SMAD6	4091	genome.wustl.edu	37	15	67073661	67073661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	67073661	67073661	G	A	SNP	SMAD6	NM_005585	human	genbank	57_37b	+1	reviewed	missense	c.1279	p.V427M	1.000	superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	HMMSmart_SM00523,HMMPfam_MH1,superfamily_SMAD MH1 domain,superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	-	no_errors	
SMCR7L	54471	genome.wustl.edu	37	22	39910045	39910045	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39910045	39910045	T	C	SNP	SMCR7L	NM_019008	human	genbank	57_37b	+1	validated	missense	c.1109	p.I370T	1.000	NULL	NULL	-	no_errors	
SNX25	83891	genome.wustl.edu	37	4	186263128	186263128	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186263128	186263128	A	G	SNP	SNX25	NM_031953	human	genbank	57_37b	+1	validated	splice_site	c.1555-2	e11-2	0.999	-	-	-	no_errors	
SRRM1	10250	genome.wustl.edu	37	1	24975442	24975442	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24975442	24975442	G	A	SNP	SRRM1	NM_005839	human	genbank	57_37b	+1	validated	silent	c.327	p.L109	1.000	superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI	superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI	-	no_errors	
STK38L	23012	genome.wustl.edu	37	12	27450761	27450761	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	27450761	27450761	T	G	SNP	STK38L	NM_015000	human	genbank	57_37b	+1	validated	missense	c.108	p.I36M	0.938	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors	
TCHH	7062	genome.wustl.edu	37	1	152082308	152082308	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152082308	152082308	C	T	SNP	TCHH	NM_007113	human	genbank	57_37b	-1	provisional	missense	c.3385	p.E1129K	0.001	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors	
TECPR2	9895	genome.wustl.edu	37	14	102916165	102916165	+	Missense_Mutation	SNP	C	C	T	rs72700618	byCluster;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102916165	102916165	C	T	SNP	TECPR2	NM_014844	human	genbank	57_37b	+1	validated	missense	c.3275	p.S1092L	1.000	NULL	PatternScan_WD_REPEATS_1,HMMSmart_WD40,superfamily_WD40_like,HMMSmart_TECPR,HMMPfam_Hyd_WA	-		
TLE6	79816	genome.wustl.edu	37	19	2994072	2994072	+	Missense_Mutation	SNP	G	A	A	rs73514575	byCluster;byFrequency;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2994072	2994072	G	A	SNP	TLE6	ENST00000360309	human	ensembl	57_37b	+1	known	missense	c.1219	p.G407S	0.045	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320	-		
TNKS1BP1	85456	genome.wustl.edu	37	11	57081323	57081323	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57081323	57081323	G	C	SNP	TNKS1BP1	NM_033396	human	genbank	57_37b	-1	validated	nonsense	c.839	p.S280*	0.099	NULL	NULL	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578263	7578263	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.586	p.R196*	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TPR	7175	genome.wustl.edu	37	1	186329484	186329484	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186329484	186329484	G	C	SNP	TPR	NM_003292	human	genbank	57_37b	-1	reviewed	missense	c.1112	p.S371C	0.993	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors	
TSPAN2	10100	genome.wustl.edu	37	1	115604798	115604798	+	Silent	SNP	C	C	T	rs10776795	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115604798	115604798	C	T	SNP	TSPAN2	NM_005725	human	genbank	57_37b	-1	reviewed	silent	c.228	p.G76	0.450	HMMPfam_Tetraspannin,PatternScan_TM4_1	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-		
TTF2	8458	genome.wustl.edu	37	1	117634518	117634518	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117634518	117634518	G	A	SNP	TTF2	NM_003594	human	genbank	57_37b	+1	reviewed	silent	c.2751	p.L917	1.000	NULL	HMMPfam_zf-GRF,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
TYRO3	7301	genome.wustl.edu	37	15	41859670	41859670	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41859670	41859670	G	A	SNP	TYRO3	NM_006293	human	genbank	57_37b	+1	provisional	missense	c.896	p.R299H	1.000	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
VAMP1	6843	genome.wustl.edu	37	12	6574108	6574108	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6574108	6574108	C	G	SNP	VAMP1	NM_014231	human	genbank	57_37b	-1	reviewed	splice_site	c.289-1	e4-1	1.000	-	-	-	no_errors	
VAV1	7409	genome.wustl.edu	37	19	6828862	6828862	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6828862	6828862	G	A	SNP	VAV1	NM_005428	human	genbank	57_37b	+1	reviewed	missense	c.1216	p.D406N	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	HMMPfam_CH,superfamily_Calponin-homology,HMMSmart_CH,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_1,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors	
ZNF33B	7582	genome.wustl.edu	37	10	43088872	43088872	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43088872	43088872	T	C	SNP	ZNF33B	NM_006955	human	genbank	57_37b	-1	provisional	missense	c.1526	p.K509R	0.003	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF492	57615	genome.wustl.edu	37	19	22817278	22817278	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22817278	22817278	T	A	SNP	ZNF492	NM_020855	human	genbank	57_37b	+1	validated	splice_site	c.1+2	e0+2	0.014	-	-	-	no_errors	
ZNF761	388561	genome.wustl.edu	37	19	53959767	53959767	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53959767	53959767	A	T	SNP	ZNF761	NM_001008401	human	genbank	57_37b	+1	validated	missense	c.2006	p.K669M	0.859	superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Multiheme cytochromes	-	no_errors	
ZNF844	284391	genome.wustl.edu	37	19	12186728	12186728	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D0-01A-11W-A019-09	TCGA-A2-A0D0-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12186728	12186728	C	A	SNP	ZNF844	NM_001136501	human	genbank	57_37b	+1	provisional	missense	c.793	p.P265T	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
