Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACTN1	87	genome.wustl.edu	37	14	69343865	69343865	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69343865	69343865	G	C	SNP	ACTN1	NM_001130004	human	genbank	57_37b	-1	reviewed	silent	c.2520	p.R840	0.077	superfamily_SSF47473,HMMSmart_EFh	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen	-	no_errors	
ADCY5	111	genome.wustl.edu	37	3	123005626	123005626	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123005626	123005626	A	C	SNP	ADCY5	NM_183357	human	genbank	57_37b	-1	validated	missense	c.3563	p.V1188G	1.000	HMMSmart_CYCc,HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors	
AHCTF1	25909	genome.wustl.edu	37	1	247014469	247014469	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247014469	247014469	C	G	SNP	AHCTF1	NM_015446	human	genbank	57_37b	-1	validated	silent	c.4839	p.V1613	0.143	NULL	PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors	
ANGPT4	51378	genome.wustl.edu	37	20	865877	865877	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	865877	865877	G	C	SNP	ANGPT4	NM_015985	human	genbank	57_37b	-1	reviewed	missense	c.679	p.L227V	0.995	NULL	HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
ANKFY1	51479	genome.wustl.edu	37	17	4120392	4120392	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4120392	4120392	A	G	SNP	ANKFY1	NM_016376	human	genbank	57_37b	-1	validated	missense	c.344	p.M115T	1.000	HMMPfam_BTB,HMMSmart_BTB,superfamily_ANK	HMMPfam_BTB,HMMSmart_BTB,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE	-	no_errors	
AWAT1	158833	genome.wustl.edu	37	X	69458163	69458163	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69458163	69458163	A	T	SNP	AWAT1	NM_001013579	human	genbank	57_37b	+1	reviewed	missense	c.562	p.S188C	0.996	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors	
BCAR3	8412	genome.wustl.edu	37	1	94054925	94054925	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94054925	94054925	G	T	SNP	BCAR3	NM_003567	human	genbank	57_37b	-1	reviewed	missense	c.538	p.L180M	1.000	superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2	superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00147	-	no_errors	
C20orf94	128710	genome.wustl.edu	37	20	10603922	10603922	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	10603922	10603922	C	T	SNP	C20orf94	NM_001009608	human	genbank	57_37b	+1	validated	silent	c.1122	p.N374	0.997	NULL	NULL	-	no_errors	
C21orf128	150147	genome.wustl.edu	37	21	43523920	43523920	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43523920	43523920	C	G	SNP	C21orf128	ENST00000329015	human	ensembl	57_37b	-1	known	missense	c.313	p.G105R	0.002	NULL	NULL	-	no_errors	
CAPN13	92291	genome.wustl.edu	37	2	30987066	30987066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	30987066	30987066	C	T	SNP	CAPN13	NM_144575	human	genbank	57_37b	-1	validated	missense	c.631	p.D211N	0.002	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand	-	no_errors	
CARD11	84433	genome.wustl.edu	37	7	2959046	2959046	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2959046	2959046	C	G	SNP	CARD11	NM_032415	human	genbank	57_37b	-1	validated	missense	c.2470	p.D824H	0.849	NULL	PatternScan_GUANYLATE_KINASE_1,superfamily_DEATH_like,HMMPfam_CARD,superfamily_PDZ,HMMSmart_PDZ,superfamily_SSF52540	-	no_errors	
CARD17	0	genome.wustl.edu	37	11	104971342	104971342	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	104971342	104971342	G	T	SNP	CARD17	NM_001007232	human	genbank	57_37b	-1	provisional	missense	c.172	p.L58I	0.000	HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD	HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD	-	no_errors	
CASR	846	genome.wustl.edu	37	3	122002718	122002718	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122002718	122002718	C	A	SNP	CASR	NM_000388	human	genbank	57_37b	+1	reviewed	missense	c.1917	p.N639K	1.000	HMMPfam_7tm_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
CD46	4179	genome.wustl.edu	37	1	207940997	207940997	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207940997	207940997	G	C	SNP	CD46	NM_172359	human	genbank	57_37b	+1	reviewed	splice_site	c.901+1	e7+1	0.606	-	-	-	no_errors	
CD86	942	genome.wustl.edu	37	3	121825277	121825277	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121825277	121825277	G	C	SNP	CD86	NM_175862	human	genbank	57_37b	+1	reviewed	silent	c.633	p.T211	0.000	NULL	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_errors	
CENPK	64105	genome.wustl.edu	37	5	64850678	64850678	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	64850678	64850678	A	G	SNP	CENPK	NM_022145	human	genbank	57_37b	-1	validated	silent	c.57	p.N19	0.007	NULL	NULL	-	no_errors	
CHRM3	1131	genome.wustl.edu	37	1	240071942	240071942	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240071942	240071942	G	T	SNP	CHRM3	NM_000740	human	genbank	57_37b	+1	reviewed	silent	c.1191	p.G397	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
COL9A1	1297	genome.wustl.edu	37	6	70981371	70981371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70981371	70981371	C	T	SNP	COL9A1	NM_001851	human	genbank	57_37b	-1	reviewed	missense	c.1130	p.R377H	0.805	HMMPfam_Collagen	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors	
DAB2	1601	genome.wustl.edu	37	5	39377250	39377250	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	39377250	39377250	C	T	SNP	DAB2	NM_001343	human	genbank	57_37b	-1	validated	missense	c.1639	p.G547S	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_PFKB_KINASES_1	-	no_errors	
DAP3	7818	genome.wustl.edu	37	1	155707956	155707956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155707956	155707956	G	A	SNP	DAP3	NM_004632	human	genbank	57_37b	+1	reviewed	missense	c.1120	p.E374K	0.992	HMMPfam_DAP3	HMMPfam_DAP3	-	no_errors	
DDX25	29118	genome.wustl.edu	37	11	125787146	125787146	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125787146	125787146	G	A	SNP	DDX25	NM_013264	human	genbank	57_37b	+1	reviewed	silent	c.1038	p.Q346	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
DNMT3A	1788	genome.wustl.edu	37	2	25463541	25463541	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25463541	25463541	G	C	SNP	DNMT3A	NM_022552	human	genbank	57_37b	-1	reviewed	missense	c.2141	p.S714C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1	-	no_errors	
DOCK4	9732	genome.wustl.edu	37	7	111846181	111846181	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	111846181	111846181	T	C	SNP	DOCK4	NM_014705	human	genbank	57_37b	-1	reviewed	missense	c.13	p.T5A	1.000	superfamily_SH3-domain	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
ENSG00000210082	0	genome.wustl.edu	37	MT	2626	2626	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	2626	2626	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000210082	0	genome.wustl.edu	37	MT	3010	3010	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	3010	3010	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000210195	0	genome.wustl.edu	37	MT	15935	15935	+	RNA	SNP	A	A	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	15935	15935	A	C	SNP	ENSG00000210195	ENST00000387460	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000210195	0	genome.wustl.edu	37	MT	15951	15951	+	RNA	SNP	A	A	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	15951	15951	A	G	SNP	ENSG00000210195	ENST00000387460	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000225607	0	genome.wustl.edu	37	19	15881928	15881953	+	Frame_Shift_Del	DEL	AGGCGGCAGGCCCTGCGGAAGCGCCA	AGGCGGCAGGCCCTGCGGAAGCGCCA	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	AGGCGGCAGGCCCTGCGGAAGCGCCA	AGGCGGCAGGCCCTGCGGAAGCGCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15881928	15881953	AGGCGGCAGGCCCTGCGGAAGCGCCA	-	DEL	ENSG00000225607	ENST00000412610	human	ensembl	57_37b	-1	known	frame_shift_del	c.641_616	p.W206fs	0.930:0.823:0.815:0.810:0.816:0.916:0.933:0.936:0.939:0.943:0.935:0.739:0.413:0.370:0.347:0.370:0.590:0.652:0.663:0.630:0.525:0.392:0.221:0.072:0.013:0.010	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450	(deletion:cds_exon[15881801,15882065])	no_errors	
FBN3	84467	genome.wustl.edu	37	19	8140058	8140058	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8140058	8140058	A	G	SNP	FBN3	NM_032447	human	genbank	57_37b	-1	reviewed	silent	c.7599	p.D2533	0.030	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors	
FHOD3	80206	genome.wustl.edu	37	18	34273180	34273180	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	34273180	34273180	A	G	SNP	FHOD3	NM_025135	human	genbank	57_37b	+1	validated	missense	c.1505	p.Y502C	1.000	NULL	superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors	
FRAS1	80144	genome.wustl.edu	37	4	79353539	79353539	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	79353539	79353539	G	C	SNP	FRAS1	NM_025074	human	genbank	57_37b	+1	reviewed	missense	c.4995	p.E1665D	0.769	NULL	HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors	
GCNT4	51301	genome.wustl.edu	37	5	74325681	74325681	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	74325681	74325681	G	C	SNP	GCNT4	NM_016591	human	genbank	57_37b	-1	validated	missense	c.182	p.T61S	0.129	NULL	HMMPfam_Branch	-	no_errors	
GHRHR	2692	genome.wustl.edu	37	7	31014652	31014652	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31014652	31014652	C	G	SNP	GHRHR	ENST00000242046	human	ensembl	57_37b	+1	known	missense	c.325	p.R109G	0.780	NULL	NULL	-	no_errors	
GLYATL2	219970	genome.wustl.edu	37	11	58602060	58602060	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58602060	58602060	A	G	SNP	GLYATL2	NM_145016	human	genbank	57_37b	-1	validated	missense	c.727	p.Y243H	0.000	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Gly_acyl_tr_C	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Gly_acyl_tr_C	-	no_errors	
HDAC9	9734	genome.wustl.edu	37	7	19035653	19035653	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	19035653	19035653	G	A	SNP	HDAC9	NM_178425	human	genbank	57_37b	+1	reviewed	missense	c.3178	p.G1060S	1.000	NULL	superfamily_SSF52768,HMMPfam_Hist_deacetyl	-	no_errors	
HIST1H2BA	255626	genome.wustl.edu	37	6	25727483	25727509	+	In_Frame_Del	DEL	GCACCAAGGCTGTCACTAAGTACACCA	GCACCAAGGCTGTCACTAAGTACACCA	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	GCACCAAGGCTGTCACTAAGTACACCA	GCACCAAGGCTGTCACTAAGTACACCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	25727483	25727509	GCACCAAGGCTGTCACTAAGTACACCA	-	DEL	HIST1H2BA	NM_170610	human	genbank	57_37b	+1	reviewed	in_frame_del	c.347_373	p.TKAVTKYTS117in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.348:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.992:1.000	superfamily_Histone-fold,HMMSmart_SM00427	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	(deletion:cds_exon[25727137,25727520])	no_errors	
IDO2	169355	genome.wustl.edu	37	8	39871156	39871156	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	39871156	39871156	C	T	SNP	IDO2	NM_194294	human	genbank	57_37b	+1	validated	silent	c.831	p.S277	0.001	HMMPfam_IDO	HMMPfam_IDO	-	no_errors	
IMPG1	3617	genome.wustl.edu	37	6	76657075	76657075	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	76657075	76657075	T	C	SNP	IMPG1	NM_001563	human	genbank	57_37b	-1	provisional	missense	c.2000	p.Q667R	0.001	superfamily_SSF82671,HMMSmart_SEA,HMMPfam_SEA	superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA	-	no_errors	
INPP4B	8821	genome.wustl.edu	37	4	143129611	143129611	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	143129611	143129611	G	C	SNP	INPP4B	NM_001101669	human	genbank	57_37b	-1	reviewed	missense	c.1039	p.Q347E	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
JAKMIP2	9832	genome.wustl.edu	37	5	147011063	147011066	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	TCTC	TCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	147011063	147011066	TCTC	-	DEL	JAKMIP2	NM_014790	human	genbank	57_37b	-1	provisional	frame_shift_del	c.1788_1785	p.E595fs	1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[147010976,147011074])	no_errors	
KCNK4	50801	genome.wustl.edu	37	11	64064433	64064449	+	Frame_Shift_Del	DEL	CAGCGCCTTCTTTTTCT	CAGCGCCTTCTTTTTCT	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	CAGCGCCTTCTTTTTCT	CAGCGCCTTCTTTTTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64064433	64064449	CAGCGCCTTCTTTTTCT	-	DEL	KCNK4	NM_033310	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.273_289	p.S92fs	1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	(deletion:cds_exon[64064350,64064473])	no_errors	
KLHL6	89857	genome.wustl.edu	37	3	183225935	183225935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183225935	183225935	G	A	SNP	KLHL6	NM_130446	human	genbank	57_37b	-1	validated	missense	c.821	p.T274M	0.924	HMMPfam_BACK	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors	
LAMP2	3920	genome.wustl.edu	37	X	119562414	119562414	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119562414	119562414	G	C	SNP	LAMP2	NM_001122606	human	genbank	57_37b	-1	reviewed	silent	c.1161	p.G387	1.000	HMMPfam_Lamp	PatternScan_LAMP_1,HMMPfam_Lamp	-	no_errors	
LRFN2	57497	genome.wustl.edu	37	6	40400824	40400824	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	40400824	40400824	G	A	SNP	LRFN2	NM_020737	human	genbank	57_37b	-1	provisional	missense	c.29	p.A10V	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
LRRC8C	84230	genome.wustl.edu	37	1	90178433	90178433	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	90178433	90178433	G	C	SNP	LRRC8C	NM_032270	human	genbank	57_37b	+1	validated	missense	c.304	p.D102H	0.559	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors	
MAGEC1	9947	genome.wustl.edu	37	X	140993605	140993624	+	Frame_Shift_Del	DEL	GCTTTATTGAGTATTTTCCA	GCTTTATTGAGTATTTTCCA	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	GCTTTATTGAGTATTTTCCA	GCTTTATTGAGTATTTTCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	140993605	140993624	GCTTTATTGAGTATTTTCCA	-	DEL	MAGEC1	NM_005462	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.415_434	p.A139fs	0.962:0.942:0.929:0.921:0.916:0.912:0.912:0.913:0.914:0.928:0.944:0.962:0.960:0.959:0.951:0.942:0.943:0.936:0.894:0.852	NULL	HMMPfam_MAGE	(deletion:cds_exon[140993195,140996619])	no_errors	
MAPK6	5597	genome.wustl.edu	37	15	52338804	52338804	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	52338804	52338804	G	C	SNP	MAPK6	NM_002748	human	genbank	57_37b	+1	reviewed	missense	c.147	p.K49N	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MCOLN1	57192	genome.wustl.edu	37	19	7598649	7598649	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7598649	7598649	C	G	SNP	MCOLN1	NM_020533	human	genbank	57_37b	+1	reviewed	missense	c.1711	p.P571A	0.067	NULL	HMMPfam_Ion_trans	-	no_errors	
MLL4	9757	genome.wustl.edu	37	19	36229228	36229228	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36229228	36229228	G	T	SNP	MLL4	NM_014727	human	genbank	57_37b	+1	reviewed	missense	c.7918	p.D2640Y	1.000	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317	HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MOV10L1	54456	genome.wustl.edu	37	22	50580592	50580592	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50580592	50580592	C	G	SNP	MOV10L1	NM_018995	human	genbank	57_37b	+1	reviewed	missense	c.2153	p.P718R	0.003	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
MSH4	4438	genome.wustl.edu	37	1	76365305	76365305	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	76365305	76365305	T	C	SNP	MSH4	NM_002440	human	genbank	57_37b	+1	validated	silent	c.2533	p.L845	0.971	HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac	superfamily_DNA_mismatch_repair_MutS_connt,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors	
MTMR8	55613	genome.wustl.edu	37	X	63548744	63548744	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	63548744	63548744	C	A	SNP	MTMR8	NM_017677	human	genbank	57_37b	-1	validated	missense	c.1389	p.L463F	0.998	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
MYH8	4626	genome.wustl.edu	37	17	10297607	10297607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10297607	10297607	G	A	SNP	MYH8	NM_002472	human	genbank	57_37b	-1	reviewed	missense	c.5125	p.L1709F	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
OR10Q1	219960	genome.wustl.edu	37	11	57995968	57995968	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57995968	57995968	T	A	SNP	OR10Q1	NM_001004471	human	genbank	57_37b	-1	validated	missense	c.380	p.Y127F	0.985	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR52R1	119695	genome.wustl.edu	37	11	4825420	4825420	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4825420	4825420	A	T	SNP	OR52R1	NM_001005177	human	genbank	57_37b	-1	validated	missense	c.428	p.L143H	0.992	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
PAAF1	80227	genome.wustl.edu	37	11	73627700	73627700	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73627700	73627700	T	C	SNP	PAAF1	NM_025155	human	genbank	57_37b	+1	provisional	silent	c.930	p.S310	0.563	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
PAGE5	90737	genome.wustl.edu	37	X	55248235	55248235	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	55248235	55248235	G	C	SNP	PAGE5	NM_130467	human	genbank	57_37b	+1	reviewed	missense	c.177	p.E59D	0.001	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors	
PBRM1	55193	genome.wustl.edu	37	3	52651338	52651338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52651338	52651338	C	T	SNP	PBRM1	NM_018165	human	genbank	57_37b	-1	validated	missense	c.1662	p.M554I	1.000	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,HMMPfam_BAH,HMMSmart_BAH,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
PDZD4	57595	genome.wustl.edu	37	X	153068871	153068871	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153068871	153068871	G	A	SNP	PDZD4	NM_032512	human	genbank	57_37b	-1	provisional	silent	c.2247	p.H749	0.422	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
PHC1	1911	genome.wustl.edu	37	12	9085307	9085307	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9085307	9085307	T	C	SNP	PHC1	NM_004426	human	genbank	57_37b	+1	reviewed	silent	c.1254	p.A418	0.176	NULL	HMMPfam_zf-FCS,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
PIKFYVE	200576	genome.wustl.edu	37	2	209190734	209190734	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	209190734	209190734	C	G	SNP	PIKFYVE	NM_015040	human	genbank	57_37b	+1	validated	missense	c.3199	p.L1067V	1.000	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_GroEL-intermediate domain like,HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	no_errors	
PLIN4	0	genome.wustl.edu	37	19	4508875	4508875	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4508875	4508875	G	A	SNP	PLIN4	NM_001080400	human	genbank	57_37b	-1	provisional	missense	c.3565	p.R1189C	0.997	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors	
PRDM7	11105	genome.wustl.edu	37	16	90124710	90124710	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	90124710	90124710	C	G	SNP	PRDM7	NM_001098173	human	genbank	57_37b	-1	reviewed	missense	c.1466	p.G489A	0.201	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,HMMPfam_SSXRD	-	no_errors	
PREX1	57580	genome.wustl.edu	37	20	47309216	47309216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47309216	47309216	C	T	SNP	PREX1	NM_020820	human	genbank	57_37b	-1	reviewed	missense	c.1030	p.G344R	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors	
PRKCB	5579	genome.wustl.edu	37	16	24135278	24135278	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24135278	24135278	G	C	SNP	PRKCB	NM_002738	human	genbank	57_37b	+1	reviewed	silent	c.1041	p.V347	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
PTK7	5754	genome.wustl.edu	37	6	43100201	43100201	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43100201	43100201	C	A	SNP	PTK7	NM_002821	human	genbank	57_37b	+1	reviewed	missense	c.1004	p.A335D	0.958	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
PUM2	23369	genome.wustl.edu	37	2	20483175	20483175	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	20483175	20483175	G	C	SNP	PUM2	NM_015317	human	genbank	57_37b	-1	provisional	missense	c.1364	p.T455S	1.000	NULL	superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025	-	no_errors	
RELN	5649	genome.wustl.edu	37	7	103113311	103113311	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103113311	103113311	C	T	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	missense	c.10331	p.G3444E	1.000	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors	
ROBO3	64221	genome.wustl.edu	37	11	124742417	124742417	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124742417	124742417	C	T	SNP	ROBO3	NM_022370	human	genbank	57_37b	+1	reviewed	silent	c.1299	p.I433	0.966	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
RPGR	6103	genome.wustl.edu	37	X	38160592	38160592	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	38160592	38160592	G	A	SNP	RPGR	NM_001034853	human	genbank	57_37b	-1	reviewed	missense	c.967	p.R323C	1.000	superfamily_RCC1/BLIP-II	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	-	no_errors	
SCN3A	6328	genome.wustl.edu	37	2	165997183	165997183	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	165997183	165997183	G	C	SNP	SCN3A	NM_006922	human	genbank	57_37b	-1	reviewed	missense	c.1997	p.P666R	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ	-	no_errors	
SEC14L5	9717	genome.wustl.edu	37	16	5058578	5058578	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	5058578	5058578	G	-	DEL	SEC14L5	NM_014692	human	genbank	57_37b	+1	validated	frame_shift_del	c.1729	p.G577fs	0.061	superfamily_SSF101576	HMMPfam_PRELI,superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576	(deletion:cds_exon[5058422,5058649])	no_errors	
SF4	57794	genome.wustl.edu	37	19	19407862	19407862	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19407862	19407862	C	G	SNP	SF4	NM_172231	human	genbank	57_37b	-1	validated	missense	c.1179	p.K393N	0.917	NULL	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors	
SLC25A38	54977	genome.wustl.edu	37	3	39436042	39436042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39436042	39436042	G	A	SNP	SLC25A38	NM_017875	human	genbank	57_37b	+1	validated	missense	c.767	p.G256D	0.999	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
SLC39A12	221074	genome.wustl.edu	37	10	18292185	18292185	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	18292185	18292185	G	T	SNP	SLC39A12	NM_001145195	human	genbank	57_37b	+1	validated	missense	c.1845	p.M615I	0.093	HMMPfam_Zip	HMMPfam_Zip	-	no_errors	
SPTBN4	57731	genome.wustl.edu	37	19	41063136	41063136	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41063136	41063136	T	C	SNP	SPTBN4	NM_020971	human	genbank	57_37b	+1	reviewed	missense	c.5497	p.S1833P	1.000	superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
SRCIN1	0	genome.wustl.edu	37	17	36700173	36700173	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36700173	36700173	A	C	SNP	SRCIN1	NM_025248	human	genbank	57_37b	-1	validated	missense	c.3302	p.V1101G	1.000	NULL	NULL	-	no_errors	
SUV420H1	51111	genome.wustl.edu	37	11	67926140	67926140	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67926140	67926140	G	T	SNP	SUV420H1	NM_017635	human	genbank	57_37b	-1	reviewed	missense	c.1673	p.P558Q	1.000	NULL	HMMPfam_SET,superfamily_SET domain,HMMSmart_SM00317	-	no_errors	
TANC2	26115	genome.wustl.edu	37	17	61473132	61473132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61473132	61473132	G	T	SNP	TANC2	NM_025185	human	genbank	57_37b	+1	validated	missense	c.2858	p.C953F	1.000	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors	
TBCD	6904	genome.wustl.edu	37	17	80765535	80765535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80765535	80765535	C	T	SNP	TBCD	NM_005993	human	genbank	57_37b	+1	reviewed	missense	c.1139	p.A380V	1.000	superfamily_ARM repeat,HMMPfam_HEAT	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
TDRD6	221400	genome.wustl.edu	37	6	46659314	46659314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46659314	46659314	C	T	SNP	TDRD6	NM_001010870	human	genbank	57_37b	+1	validated	missense	c.3449	p.A1150V	0.990	NULL	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748	-	no_errors	
TET1	80312	genome.wustl.edu	37	10	70406740	70406740	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70406740	70406740	A	G	SNP	TET1	NM_030625	human	genbank	57_37b	+1	validated	silent	c.4254	p.E1418	0.007	NULL	HMMPfam_zf-CXXC	-	no_errors	
TH1L	51497	genome.wustl.edu	37	20	57562859	57562859	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57562859	57562859	C	A	SNP	TH1L	NM_198976	human	genbank	57_37b	+1	reviewed	missense	c.410	p.T137N	1.000	HMMPfam_TH1	HMMPfam_TH1	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7576885	7576895	+	Frame_Shift_Del	DEL	TCTTCTTTGGC	TCTTCTTTGGC	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	TCTTCTTTGGC	TCTTCTTTGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7576885	7576895	TCTTCTTTGGC	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.961_951	p.P318fs	1.000:1.000:1.000:1.000:0.998:0.993:0.964:0.348:0.038:0.010:0.000	HMMPfam_P53_tetramer	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7576853,7576926])	no_errors	
TP63	8626	genome.wustl.edu	37	3	189608638	189608638	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	189608638	189608638	C	T	SNP	TP63	NM_003722	human	genbank	57_37b	+1	reviewed	silent	c.1713	p.T571	1.000	HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors	
TRIM55	84675	genome.wustl.edu	37	8	67062591	67062591	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	67062591	67062591	C	G	SNP	TRIM55	NM_184085	human	genbank	57_37b	+1	reviewed	nonsense	c.875	p.S292*	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336	-	no_errors	
TTC24	164118	genome.wustl.edu	37	1	156551729	156551740	+	In_Frame_Del	DEL	GGCCGCAGCCCT	GGCCGCAGCCCT	-	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	GGCCGCAGCCCT	GGCCGCAGCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156551729	156551740	GGCCGCAGCCCT	-	DEL	TTC24	ENST00000368237	human	ensembl	57_37b	+1	known	in_frame_del	c.573_584	p.AALA193in_frame_del	0.786:0.795:0.556:0.167:0.997:1.000:1.000:1.000:1.000:1.000:0.997:0.997	superfamily_SSF48452	superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_4,HMMPfam_TPR_1	(deletion:cds_exon[156551157,156551862])	no_errors	
USHBP1	83878	genome.wustl.edu	37	19	17370427	17370427	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17370427	17370427	C	T	SNP	USHBP1	NM_031941	human	genbank	57_37b	-1	validated	missense	c.883	p.A295T	0.002	NULL	HMMPfam_MCC-bdg_PDZ	-	no_errors	
VWA3A	146177	genome.wustl.edu	37	16	22128094	22128094	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22128094	22128094	C	T	SNP	VWA3A	NM_173615	human	genbank	57_37b	+1	validated	missense	c.830	p.S277F	0.898	NULL	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	-	no_errors	
WDR93	56964	genome.wustl.edu	37	15	90278750	90278750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90278750	90278750	G	A	SNP	WDR93	NM_020212	human	genbank	57_37b	+1	provisional	missense	c.1574	p.C525Y	0.998	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,PatternScan_WD_REPEATS_1	-	no_errors	
ZCCHC5	203430	genome.wustl.edu	37	X	77913570	77913570	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77913570	77913570	C	T	SNP	ZCCHC5	NM_152694	human	genbank	57_37b	-1	reviewed	silent	c.348	p.A116	0.001	NULL	HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC	-	no_errors	
ZFP41	286128	genome.wustl.edu	37	8	144332310	144332310	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0D2-01A-21W-A050-09	TCGA-A2-A0D2-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144332310	144332310	G	C	SNP	ZFP41	NM_173832	human	genbank	57_37b	+1	provisional	missense	c.297	p.K99N	0.084	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
