Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
C17orf53	78995	genome.wustl.edu	37	17	42226188	42226188	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42226188	42226188	C	T	SNP	C17orf53	NM_024032	human	genbank	57_37b	+1	validated	silent	c.1017	p.P339	0.000	NULL	NULL	-	no_errors	
DOCK4	9732	genome.wustl.edu	37	7	111629136	111629136	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	111629136	111629136	T	A	SNP	DOCK4	NM_014705	human	genbank	57_37b	-1	reviewed	missense	c.398	p.H133L	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
EML4	27436	genome.wustl.edu	37	2	42552711	42552712	+	Splice_Site	INS	-	-	TATA	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	42552711	42552712	-	TATA	INS	EML4	ENST00000404662	human	ensembl	57_37b	+1	known	splice_site_ins	c.1+2_3	e0+2	0.000:0.000	-	-	-	no_errors	
ENSG00000242187	0	genome.wustl.edu	37	18	8720092	8720092	+	RNA	SNP	G	G	T	rs79793036	byCluster;by1000genomes	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8720092	8720092	G	T	SNP	ENSG00000242187	ENST00000464811	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245471	0	genome.wustl.edu	37	2	60755213	60755213	+	RNA	SNP	G	C	C	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	60755213	60755213	G	C	SNP	ENSG00000245471	ENST00000501258	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.043	-	-	-	no_errors	
FAM160A2	84067	genome.wustl.edu	37	11	6232828	6232828	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6232828	6232828	G	-	DEL	FAM160A2	NM_032127	human	genbank	57_37b	-1	validated	frame_shift_del	c.2869	p.Q957fs	1.000	NULL	HMMPfam_RAI16-like	(deletion:cds_exon[6232736,6233097])	no_errors	
FAM186A	121006	genome.wustl.edu	37	12	50747102	50747102	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	50747102	50747102	A	G	SNP	FAM186A	NM_001145475	human	genbank	57_37b	-1	provisional	silent	c.3513	p.L1171	0.027	NULL	NULL	-	no_errors	
HIST1H2BK	85236	genome.wustl.edu	37	6	27114334	27114334	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27114334	27114334	C	T	SNP	HIST1H2BK	NM_080593	human	genbank	57_37b	-1	reviewed	missense	c.244	p.A82T	1.000	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors	
HLTF	6596	genome.wustl.edu	37	3	148750037	148750037	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148750037	148750037	A	C	SNP	HLTF	NM_003071	human	genbank	57_37b	-1	reviewed	missense	c.3000	p.I1000M	0.848	NULL	HMMPfam_HIRAN,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
INSIG2	51141	genome.wustl.edu	37	2	118864382	118864382	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	118864382	118864382	A	G	SNP	INSIG2	NM_016133	human	genbank	57_37b	+1	reviewed	missense	c.439	p.T147A	1.000	HMMPfam_INSIG	HMMPfam_INSIG	-	no_errors	
LOC100287442	0	genome.wustl.edu	37	20	52778961	52778961	+	Missense_Mutation	SNP	T	T	C	rs2209314	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52778961	52778961	T	C	SNP	LOC100287442	XM_002343711	human	genbank	57_37b	+1	model	missense	c.164	p.L55P	0.000	NULL	NULL	-		
LRRC10	376132	genome.wustl.edu	37	12	70003803	70003803	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70003803	70003803	A	-	DEL	LRRC10	NM_201550	human	genbank	57_37b	-1	provisional	frame_shift_del	c.816	p.P273fs	0.000	NULL	superfamily_SSF52058,HMMPfam_LRR_1	(deletion:cds_exon[70003785,70004618])	no_errors	
MAGED1	9500	genome.wustl.edu	37	X	51639818	51639818	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	51639818	51639818	G	-	DEL	MAGED1	NM_001005333	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1235	p.W412fs	1.000	NULL	HMMPfam_MAGE	(deletion:cds_exon[51639505,51640173])	no_errors	
MAP3K9	4293	genome.wustl.edu	37	14	71197420	71197420	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	71197420	71197420	A	-	DEL	MAP3K9	NM_033141	human	genbank	57_37b	-1	validated	frame_shift_del	c.3034	p.S1012fs	0.995	NULL	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Kinase_like,HMMSmart_TyrKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[71197097,71197581])	no_errors	
NPTN	27020	genome.wustl.edu	37	15	73889543	73889544	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	73889543	73889544	-	A	INS	NPTN	NM_012428	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.259_258	p.V86fs	1.000:1.000	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,HMMPfam_I-set	-	no_errors	
RPLP0	6175	genome.wustl.edu	37	12	120636935	120636935	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120636935	120636935	A	G	SNP	RPLP0	NM_001002	human	genbank	57_37b	-1	reviewed	silent	c.304	p.L102	1.000	HMMPfam_Ribosomal_L10	HMMPfam_Ribosomal_L10,HMMPfam_Ribosomal_60s	-	no_errors	
SPTAN1	6709	genome.wustl.edu	37	9	131380311	131380311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131380311	131380311	G	A	SNP	SPTAN1	NM_001130438	human	genbank	57_37b	+1	validated	missense	c.5524	p.G1842R	1.000	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577121	7577121	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.817	p.R273C	0.830	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
ZNF142	7701	genome.wustl.edu	37	2	219509721	219509721	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0T1-01A-21D-A099-09	TCGA-A2-A0T1-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219509721	219509721	C	T	SNP	ZNF142	NM_001105537	human	genbank	57_37b	-1	validated	silent	c.1518	p.R506	0.884	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
