Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
C1orf65	164127	genome.wustl.edu	37	1	223567803	223567803	+	Missense_Mutation	SNP	G	G	A	rs10907376	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223567803	223567803	G	A	SNP	C1orf65	NM_152610	human	genbank	57_37b	+1	validated	missense	c.986	p.G329D	0.000	NULL	NULL	-		
C9orf79	286234	genome.wustl.edu	37	9	90503007	90503007	+	Missense_Mutation	SNP	A	A	G	rs11789780	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90503007	90503007	A	G	SNP	C9orf79	NM_178828	human	genbank	57_37b	+1	validated	missense	c.3605	p.D1202G	0.003	NULL	NULL	-		
CABIN1	23523	genome.wustl.edu	37	22	24573575	24573575	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24573575	24573575	C	T	SNP	CABIN1	NM_012295	human	genbank	57_37b	+1	reviewed	silent	c.6309	p.A2103	0.970	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_MEF2_binding	-	no_errors	
EIF5	1983	genome.wustl.edu	37	14	103803097	103803097	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	103803097	103803097	C	T	SNP	EIF5	NM_001969	human	genbank	57_37b	+1	validated	missense	c.238	p.H80Y	1.000	HMMPfam_eIF-5_eIF-2B,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain,HMMSmart_SM00653	HMMPfam_eIF-5_eIF-2B,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain,HMMSmart_SM00653,superfamily_Zinc-binding domain of translation initiation factor 2 beta,superfamily_ARM repeat,HMMSmart_SM00515,HMMPfam_W2	-	no_errors	
ETNK2	55224	genome.wustl.edu	37	1	204103702	204103702	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204103702	204103702	G	C	SNP	ETNK2	NM_018208	human	genbank	57_37b	-1	reviewed	missense	c.1029	p.F343L	1.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Choline_kinase	-	no_errors	
FAM50A	9130	genome.wustl.edu	37	X	153674859	153674859	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153674859	153674859	C	T	SNP	FAM50A	NM_004699	human	genbank	57_37b	+1	reviewed	silent	c.393	p.G131	0.000	HMMPfam_XAP5	HMMPfam_XAP5	-	no_errors	
FAM75C1	441452	genome.wustl.edu	37	9	90537489	90537489	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90537489	90537489	G	T	SNP	FAM75C1	NM_001145124	human	genbank	57_37b	+1	validated	silent	c.2667	p.G889	0.007	NULL	NULL	-	no_errors	
FNBP4	23360	genome.wustl.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	GGTGGT	GGTGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47788664	47788669	GGTGGT	-	DEL	FNBP4	NM_015308	human	genbank	57_37b	-1	validated	in_frame_del	c.177_172	p.TT58in_frame_del	0.000:0.001:0.000:0.000:0.003:0.000	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	(deletion:cds_exon[47788621,47788840])	no_errors	
GABRE	2564	genome.wustl.edu	37	X	151128423	151128423	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151128423	151128423	G	A	SNP	GABRE	NM_004961	human	genbank	57_37b	-1	reviewed	silent	c.672	p.I224	0.249	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors	
HSD17B10	3028	genome.wustl.edu	37	X	53460760	53460760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53460760	53460760	C	T	SNP	HSD17B10	NM_004493	human	genbank	57_37b	-1	reviewed	missense	c.101	p.G34E	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors	
ILK	3611	genome.wustl.edu	37	11	6631001	6631001	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6631001	6631001	G	A	SNP	ILK	NM_001014794	human	genbank	57_37b	+1	reviewed	missense	c.903	p.M301I	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	-	no_errors	
MAP2	4133	genome.wustl.edu	37	2	210574677	210574677	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	210574677	210574677	C	G	SNP	MAP2	NM_002374	human	genbank	57_37b	+1	reviewed	nonsense	c.4772	p.S1591*	1.000	NULL	HMMPfam_RII_binding_1,HMMPfam_MAP2_projctn,HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	-	no_errors	
MSX2	4488	genome.wustl.edu	37	5	174156269	174156269	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	174156269	174156269	C	T	SNP	MSX2	NM_002449	human	genbank	57_37b	+1	reviewed	nonsense	c.487	p.Q163*	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
MYO1C	4641	genome.wustl.edu	37	17	1373518	1373518	+	Missense_Mutation	SNP	T	T	C	rs9905106	byCluster;byHapMap;by1000genomes	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1373518	1373518	T	C	SNP	MYO1C	NM_001080779	human	genbank	57_37b	-1	reviewed	missense	c.2477	p.Q826R	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_TH1	-		
NF1	4763	genome.wustl.edu	37	17	29663859	29663860	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29663859	29663860	-	C	INS	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.6354_6355	p.R2118fs	0.841:0.876	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
RGS7	6000	genome.wustl.edu	37	1	240976995	240976995	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240976995	240976995	G	A	SNP	RGS7	NM_002924	human	genbank	57_37b	-1	validated	silent	c.879	p.Y293	0.963	superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL	superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	-	no_errors	
SNORA21	619505	genome.wustl.edu	37	17	37009228	37009228	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37009228	37009228	T	C	SNP	SNORA21	NR_002576	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.000	-	-	-	no_errors	
TRAPPC10	7109	genome.wustl.edu	37	21	45513974	45513974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45513974	45513974	G	A	SNP	TRAPPC10	NM_003274	human	genbank	57_37b	+1	reviewed	missense	c.3028	p.V1010I	0.998	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors	
TRPM2	7226	genome.wustl.edu	37	21	45833784	45833784	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45833784	45833784	C	T	SNP	TRPM2	NM_003307	human	genbank	57_37b	+1	reviewed	silent	c.2973	p.F991	0.999	HMMPfam_Ion_trans,PatternScan_CHITINASE_18	HMMPfam_Ion_trans,PatternScan_CHITINASE_18,superfamily_Nudix	-	no_errors	
TTLL1	25809	genome.wustl.edu	37	22	43435850	43435850	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YL-01A-21D-A10G-09	TCGA-A2-A0YL-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43435850	43435850	G	C	SNP	TTLL1	NM_012263	human	genbank	57_37b	-1	validated	missense	c.1204	p.Q402E	0.847	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors	
