Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AFF4	27125	genome.wustl.edu	37	5	132232866	132232866	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132232866	132232866	C	T	SNP	AFF4	NM_014423	human	genbank	57_37b	-1	validated	missense	c.1456	p.V486M	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	
ASXL1	171023	genome.wustl.edu	37	20	31023224	31023224	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31023224	31023224	G	T	SNP	ASXL1	NM_015338	human	genbank	57_37b	+1	reviewed	silent	c.2709	p.S903	0.000	NULL	NULL	-	no_errors	
C6orf138	442213	genome.wustl.edu	37	6	47976376	47976376	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	47976376	47976376	C	T	SNP	C6orf138	NM_001013732	human	genbank	57_37b	-1	validated	missense	c.850	p.A284T	1.000	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	
CARD11	84433	genome.wustl.edu	37	7	2983933	2983933	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2983933	2983933	G	A	SNP	CARD11	NM_032415	human	genbank	57_37b	-1	validated	silent	c.597	p.D199	0.968	NULL	PatternScan_GUANYLATE_KINASE_1,superfamily_DEATH_like,HMMPfam_CARD,superfamily_PDZ,HMMSmart_PDZ,superfamily_SSF52540	-	no_errors	
CD200R1	131450	genome.wustl.edu	37	3	112648015	112648015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	112648015	112648015	C	G	SNP	CD200R1	NM_138939	human	genbank	57_37b	-1	reviewed	missense	c.542	p.R181T	0.001	NULL	superfamily_Immunoglobulin	-	no_errors	
CHD6	84181	genome.wustl.edu	37	20	40050464	40050464	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	40050464	40050464	G	C	SNP	CHD6	NM_032221	human	genbank	57_37b	-1	reviewed	missense	c.4811	p.P1604R	1.000	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors	
COG1	9382	genome.wustl.edu	37	17	71199175	71199175	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	71199175	71199175	G	A	SNP	COG1	NM_018714	human	genbank	57_37b	+1	reviewed	missense	c.2110	p.D704N	0.796	NULL	HMMPfam_Vps51	-	no_errors	
CPSF4	10898	genome.wustl.edu	37	7	99054076	99054076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99054076	99054076	G	A	SNP	CPSF4	NM_006693	human	genbank	57_37b	+1	validated	missense	c.763	p.A255T	1.000	HMMPfam_zf-CCHC,HMMSmart_SM00343	HMMSmart_SM00356,HMMPfam_zf-CCCH,superfamily_CCCH zinc finger,HMMPfam_zf-CCHC,HMMSmart_SM00343	-	no_errors	
CYP2B7P1	1556	genome.wustl.edu	37	19	41455816	41455816	+	RNA	SNP	T	C	C	rs12972933	byCluster;by1000genomes	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41455816	41455816	T	C	SNP	CYP2B7P1	NR_001278	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.024	-	-	-		
ENSG00000246934	0	genome.wustl.edu	37	8	73965434	73965435	+	RNA	INS	-	-	GTTTTGTTTTGTTTT	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73965434	73965435	-	GTTTTGTTTTGTTTT	INS	ENSG00000246934	ENST00000501315	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.004:0.007	-	-	-	no_errors	
FGF18	8817	genome.wustl.edu	37	5	170883698	170883698	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	170883698	170883698	C	T	SNP	FGF18	NM_003862	human	genbank	57_37b	+1	reviewed	silent	c.513	p.D171	0.882	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors	
FOXM1	2305	genome.wustl.edu	37	12	2977870	2977870	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2977870	2977870	C	T	SNP	FOXM1	NM_202002	human	genbank	57_37b	-1	validated	silent	c.705	p.E235	0.613	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors	
LAMB1	3912	genome.wustl.edu	37	7	107638937	107638937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107638937	107638937	C	T	SNP	LAMB1	NM_002291	human	genbank	57_37b	-1	reviewed	missense	c.214	p.E72K	1.000	HMMSmart_SM00136,HMMPfam_Laminin_N	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_Prefoldin	-	no_errors	
LASS3	204219	genome.wustl.edu	37	15	101009639	101009639	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	101009639	101009639	C	T	SNP	LASS3	NM_178842	human	genbank	57_37b	-1	validated	silent	c.789	p.L263	0.999	HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	superfamily_Homeodomain-like,HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-	no_errors	
LOC100288406	0	genome.wustl.edu	37	12	92498	92498	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	92498	92498	C	G	SNP	LOC100288406	XM_002343141	human	genbank	57_37b	+1	model	silent	c.522	p.P174	0.000	NULL	NULL	-	no_errors	
LPHN2	23266	genome.wustl.edu	37	1	82456779	82456779	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	82456779	82456779	C	A	SNP	LPHN2	NM_012302	human	genbank	57_37b	+1	reviewed	missense	c.4162	p.P1388T	1.000	HMMPfam_Latrophilin	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors	
MUC5B	727897	genome.wustl.edu	37	11	1270178	1270178	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1270178	1270178	C	T	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	missense	c.12077	p.T4026M	0.006	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors	
MYH3	4621	genome.wustl.edu	37	17	10543517	10543517	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10543517	10543517	C	T	SNP	MYH3	NM_002470	human	genbank	57_37b	-1	reviewed	silent	c.2478	p.K826	0.999	superfamily_SSF52540	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
NEURL4	84461	genome.wustl.edu	37	17	7227492	7227492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7227492	7227492	G	A	SNP	NEURL4	NM_032442	human	genbank	57_37b	-1	validated	missense	c.1997	p.P666L	0.998	NULL	HMMPfam_Neuralized,HMMSmart_SM00588	-	no_errors	
NIPBL	25836	genome.wustl.edu	37	5	37006526	37006526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	37006526	37006526	C	T	SNP	NIPBL	NM_133433	human	genbank	57_37b	+1	reviewed	missense	c.3923	p.A1308V	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
NLRP10	338322	genome.wustl.edu	37	11	7982638	7982638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7982638	7982638	G	A	SNP	NLRP10	NM_176821	human	genbank	57_37b	-1	reviewed	missense	c.521	p.S174L	0.000	superfamily_SSF52540,HMMPfam_NACHT	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT	-	no_errors	
ORMDL3	94103	genome.wustl.edu	37	17	38079470	38079470	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38079470	38079470	G	A	SNP	ORMDL3	NM_139280	human	genbank	57_37b	-1	provisional	missense	c.221	p.T74I	1.000	HMMPfam_ORMDL	HMMPfam_ORMDL	-	no_errors	
PHKA2	5256	genome.wustl.edu	37	X	18954268	18954268	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18954268	18954268	C	A	SNP	PHKA2	NM_000292	human	genbank	57_37b	-1	reviewed	missense	c.1042	p.V348F	1.000	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	-	no_errors	
PLXNA1	5361	genome.wustl.edu	37	3	126724942	126724943	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126724942	126724943	CT	-	DEL	PLXNA1	NM_032242	human	genbank	57_37b	+1	validated	frame_shift_del	c.1849_1850	p.Y618fs	1.000:1.000	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	(deletion:cds_exon[126724922,126725021])	no_errors	
POLA1	5422	genome.wustl.edu	37	X	24859809	24859809	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24859809	24859809	A	T	SNP	POLA1	NM_016937	human	genbank	57_37b	+1	validated	missense	c.3759	p.K1253N	1.000	NULL	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B,HMMPfam_zf-DNA_Pol,superfamily_SSF90234	-	no_errors	
POLR2A	5430	genome.wustl.edu	37	17	7412461	7412461	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7412461	7412461	A	G	SNP	POLR2A	NM_000937	human	genbank	57_37b	+1	provisional	missense	c.3664	p.T1222A	1.000	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_7	superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_6,HMMPfam_RNA_pol_Rpb1_7,HMMPfam_RNA_pol_Rpb1_R,PatternScan_RNA_POL_II_REPEAT	-	no_errors	
PRKRIR	5612	genome.wustl.edu	37	11	76062581	76062581	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76062581	76062581	T	A	SNP	PRKRIR	NM_004705	human	genbank	57_37b	-1	provisional	missense	c.1613	p.E538V	1.000	NULL	HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC	-	no_errors	
SCN4A	6329	genome.wustl.edu	37	17	62034875	62034875	+	Missense_Mutation	SNP	G	G	A	rs121908556	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62034875	62034875	G	A	SNP	SCN4A	NM_000334	human	genbank	57_37b	-1	reviewed	missense	c.2023	p.R675W	0.998	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ	-		
SST	6750	genome.wustl.edu	37	3	187388034	187388034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	187388034	187388034	C	T	SNP	SST	NM_001048	human	genbank	57_37b	-1	reviewed	missense	c.46	p.V16I	1.000	NULL	HMMPfam_Somatostatin	-	no_errors	
ZC3H12A	80149	genome.wustl.edu	37	1	37941282	37941282	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	37941282	37941282	C	-	DEL	ZC3H12A	NM_025079	human	genbank	57_37b	+1	validated	frame_shift_del	c.185	p.T63fs	0.013	NULL	NULL	(deletion:cds_exon[37941098,37941540])	no_errors	
ZNF208	7757	genome.wustl.edu	37	19	22157191	22157191	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A7-A0CD-01A-11W-A019-09	TCGA-A7-A0CD-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22157191	22157191	G	T	SNP	ZNF208	NM_007153	human	genbank	57_37b	-1	provisional	silent	c.645	p.T215	0.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF48695	-	no_errors	
