Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA9	10350	genome.wustl.edu	37	17	67020435	67020435	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67020435	67020435	A	G	SNP	ABCA9	NM_080283	human	genbank	57_37b	-1	reviewed	missense	c.2201	p.I734T	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
ANK1	286	genome.wustl.edu	37	8	41615631	41615631	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41615631	41615631	T	A	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	nonsense	c.151	p.R51*	1.000	superfamily_ANK,HMMSmart_ANK	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors	
ANK1	286	genome.wustl.edu	37	8	41615631	41615631	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41615631	41615631	T	A	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	nonsense	c.151	p.R51*	1.000	superfamily_ANK,HMMSmart_ANK	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors	
ANLN	54443	genome.wustl.edu	37	7	36438976	36438976	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	36438976	36438976	G	C	SNP	ANLN	NM_018685	human	genbank	57_37b	+1	validated	missense	c.461	p.R154P	0.990	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
ATP6V1C1	528	genome.wustl.edu	37	8	104078638	104078638	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	104078638	104078638	A	G	SNP	ATP6V1C1	NM_001695	human	genbank	57_37b	+1	reviewed	missense	c.1016	p.Y339C	1.000	HMMPfam_V-ATPase_C	HMMPfam_V-ATPase_C	-	no_errors	
BCHE	590	genome.wustl.edu	37	3	165491226	165491226	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	165491226	165491226	A	T	SNP	BCHE	NM_000055	human	genbank	57_37b	-1	reviewed	missense	c.1753	p.W585R	1.000	HMMPfam_AChE_tetra	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,HMMPfam_AChE_tetra	-	no_errors	
CCDC146	57639	genome.wustl.edu	37	7	76889257	76889266	+	Splice_Site	DEL	GTGTGTGTGT	GTGTGTGTGT	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	GTGTGTGTGT	GTGTGTGTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76889257	76889266	GTGTGTGTGT	-	DEL	CCDC146	ENST00000415740	human	ensembl	57_37b	+1	known	splice_site_del	c.1+1_10	e0+1	0.002:0.003:0.004:0.005:0.005:0.005:0.001:0.000:0.000:0.000	-	-	(deletion:intron[76889257,76889284])	no_errors	
CCDC9	26093	genome.wustl.edu	37	19	47769965	47769965	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47769965	47769965	A	T	SNP	CCDC9	NM_015603	human	genbank	57_37b	+1	validated	missense	c.818	p.K273M	0.998	NULL	NULL	-	no_errors	
CDC42BPA	8476	genome.wustl.edu	37	1	227198691	227198691	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	227198691	227198691	T	C	SNP	CDC42BPA	ENST00000334218	human	ensembl	57_37b	-1	known	missense	c.4826	p.Y1609C	1.000	HMMSmart_PBD	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,HMMPfam_DMPK_coil,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_CNH,HMMSmart_CNH,HMMSmart_PBD	-	no_errors	
CDC5L	988	genome.wustl.edu	37	6	44360503	44360503	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44360503	44360503	G	A	SNP	CDC5L	NM_001253	human	genbank	57_37b	+1	reviewed	silent	c.249	p.R83	1.000	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors	
CDC7	8317	genome.wustl.edu	37	1	91989621	91989621	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	91989621	91989621	G	C	SNP	CDC7	NM_001134419	human	genbank	57_37b	+1	reviewed	missense	c.1354	p.E452Q	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CDK14	0	genome.wustl.edu	37	7	90741993	90741993	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	90741993	90741993	G	A	SNP	CDK14	NM_012395	human	genbank	57_37b	+1	validated	missense	c.1237	p.D413N	0.998	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_CYTOCHROME_B5_1,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CEACAM5	1048	genome.wustl.edu	37	19	42213656	42213656	+	Missense_Mutation	SNP	C	C	G	rs111403501	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42213656	42213656	C	G	SNP	CEACAM5	NM_004363	human	genbank	57_37b	+1	validated	missense	c.122	p.T41R	0.000	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-		
CKMT1B	1159	genome.wustl.edu	37	15	43891108	43891108	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43891108	43891108	T	G	SNP	CKMT1B	NM_020990	human	genbank	57_37b	+1	reviewed	silent	c.1095	p.G365	0.226	superfamily_SSF55931,HMMPfam_ATP-gua_Ptrans	superfamily_ATP-gua_Ptrans,HMMPfam_ATP-gua_PtransN,superfamily_SSF55931,HMMPfam_ATP-gua_Ptrans,PatternScan_GUANIDO_KINASE	-	no_errors	
COL28A1	340267	genome.wustl.edu	37	7	7571011	7571011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	7571011	7571011	G	A	SNP	COL28A1	NM_001037763	human	genbank	57_37b	-1	validated	missense	c.649	p.P217S	0.048	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Collagen,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors	
CORO1C	23603	genome.wustl.edu	37	12	109051186	109051186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109051186	109051186	G	A	SNP	CORO1C	NM_014325	human	genbank	57_37b	-1	reviewed	missense	c.644	p.A215V	1.000	superfamily_WD40 repeat-like	HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900	-	no_errors	
CXorf66	347487	genome.wustl.edu	37	X	139038828	139038828	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	139038828	139038828	A	T	SNP	CXorf66	NM_001013403	human	genbank	57_37b	-1	validated	missense	c.313	p.C105S	0.000	NULL	NULL	-	no_errors	
CYP4F8	11283	genome.wustl.edu	37	19	15730493	15730493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15730493	15730493	C	T	SNP	CYP4F8	ENST00000441682	human	ensembl	57_37b	+1	known	missense	c.445	p.R149C	0.924	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYSLTR1	10800	genome.wustl.edu	37	X	77528443	77528443	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77528443	77528443	A	C	SNP	CYSLTR1	NM_006639	human	genbank	57_37b	-1	reviewed	missense	c.801	p.C267W	0.999	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
CYTH4	27128	genome.wustl.edu	37	22	37699430	37699430	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37699430	37699430	A	G	SNP	CYTH4	NM_013385	human	genbank	57_37b	+1	reviewed	missense	c.683	p.E228G	0.999	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
DCC	1630	genome.wustl.edu	37	18	50976883	50976883	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	50976883	50976883	A	T	SNP	DCC	NM_005215	human	genbank	57_37b	+1	reviewed	silent	c.3243	p.G1081	0.866	HMMPfam_Neogenin_C	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors	
DRAM1	55332	genome.wustl.edu	37	12	102302031	102302031	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102302031	102302031	C	G	SNP	DRAM1	NM_018370	human	genbank	57_37b	+1	reviewed	missense	c.410	p.T137R	0.972	HMMPfam_Frag1	HMMPfam_Frag1	-	no_errors	
DUSP7	1849	genome.wustl.edu	37	3	52088078	52088078	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52088078	52088078	A	C	SNP	DUSP7	NM_001947	human	genbank	57_37b	-1	validated	missense	c.677	p.V226G	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195	HMMSmart_SM00450,HMMPfam_Rhodanese,superfamily_Rhodanese/Cell cycle control phosphatase,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195	-	no_errors	
DYSF	8291	genome.wustl.edu	37	2	71743347	71743347	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71743347	71743347	T	G	SNP	DYSF	NM_001130987	human	genbank	57_37b	+1	reviewed	missense	c.926	p.L309R	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_DysFN,HMMSmart_DysFC	-	no_errors	
ENSG00000176540	0	genome.wustl.edu	37	11	48387945	48387946	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	48387945	48387946	-	CA	INS	ENSG00000176540	ENST00000319813	human	ensembl	57_37b	-1	known	frame_shift_ins	c.73_72	p.E24fs	0.002:0.000	NULL	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
ENSG00000246132	0	genome.wustl.edu	37	17	47688914	47688914	+	RNA	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	47688914	47688914	C	G	SNP	ENSG00000246132	ENST00000500329	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	
FAM117B	150864	genome.wustl.edu	37	2	203591010	203591010	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	203591010	203591010	A	G	SNP	FAM117B	NM_173511	human	genbank	57_37b	+1	validated	missense	c.152	p.H51R	1.000	NULL	NULL	-	no_errors	
FAM171A1	221061	genome.wustl.edu	37	10	15255345	15255345	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15255345	15255345	C	A	SNP	FAM171A1	NM_001010924	human	genbank	57_37b	-1	validated	nonsense	c.2242	p.E748*	1.000	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors	
FAM171A1	221061	genome.wustl.edu	37	10	15255345	15255345	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15255345	15255345	C	A	SNP	FAM171A1	NM_001010924	human	genbank	57_37b	-1	validated	nonsense	c.2242	p.E748*	1.000	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors	
FCGBP	8857	genome.wustl.edu	37	19	40392553	40392553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40392553	40392553	C	T	SNP	FCGBP	NM_003890	human	genbank	57_37b	-1	validated	missense	c.7951	p.E2651K	0.100	NULL	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors	
FMO2	2327	genome.wustl.edu	37	1	171174757	171174757	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171174757	171174757	G	C	SNP	FMO2	NM_001460	human	genbank	57_37b	+1	reviewed	silent	c.1167	p.V389	0.065	HMMPfam_FMO-like	superfamily_SSF51905,HMMPfam_FMO-like	-	no_errors	
FYB	2533	genome.wustl.edu	37	5	39135064	39135064	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	39135064	39135064	T	A	SNP	FYB	NM_001465	human	genbank	57_37b	-1	validated	missense	c.1568	p.K523I	1.000	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	PatternScan_XYLOSE_ISOMERASE_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
GCC1	79571	genome.wustl.edu	37	7	127222694	127222726	+	In_Frame_Del	DEL	CCAGCTCCTGCCGGTGGAGCTGCTGCAGCCGGG	CCAGCTCCTGCCGGTGGAGCTGCTGCAGCCGGG	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	CCAGCTCCTGCCGGTGGAGCTGCTGCAGCCGGG	CCAGCTCCTGCCGGTGGAGCTGCTGCAGCCGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	127222694	127222726	CCAGCTCCTGCCGGTGGAGCTGCTGCAGCCGGG	-	DEL	GCC1	NM_024523	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1702_1670	p.ARLQQLHRQEL557in_frame_del	1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.987:0.992:0.998:1.000:1.000:1.000:0.255:0.287:0.293:0.481:0.992:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.988:0.992:0.988:0.993	NULL	HMMPfam_GRIP,HMMSmart_SM00755	(deletion:cds_exon[127222068,127223363])	no_errors	
GLG1	2734	genome.wustl.edu	37	16	74514249	74514249	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74514249	74514249	G	C	SNP	GLG1	NM_012201	human	genbank	57_37b	-1	validated	missense	c.1717	p.R573G	1.000	HMMPfam_Cys_rich_FGFR	HMMPfam_Cys_rich_FGFR	-	no_errors	
GRK1	6011	genome.wustl.edu	37	13	114325966	114325966	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114325966	114325966	A	C	SNP	GRK1	ENST00000335678	human	ensembl	57_37b	+1	known	missense	c.980	p.N327T	0.989	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors	
HCLS1	3059	genome.wustl.edu	37	3	121361820	121361820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121361820	121361820	G	A	SNP	HCLS1	NM_005335	human	genbank	57_37b	-1	validated	silent	c.408	p.V136	0.999	HMMPfam_HS1_rep	HMMPfam_HS1_rep,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
HDAC3	8841	genome.wustl.edu	37	5	141001090	141001090	+	Missense_Mutation	SNP	T	T	C	rs34901743	byCluster;byFrequency;by1000genomes	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141001090	141001090	T	C	SNP	HDAC3	NM_003883	human	genbank	57_37b	-1	reviewed	missense	c.1232	p.N411S	1.000	NULL	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	-		
HECW1	23072	genome.wustl.edu	37	7	43546850	43546850	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43546850	43546850	A	T	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	missense	c.3746	p.K1249I	1.000	superfamily_HECT	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
HERC1	8925	genome.wustl.edu	37	15	63901449	63901449	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	63901449	63901449	G	-	DEL	HERC1	NM_003922	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.14417	p.P4806fs	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00449,HMMPfam_SPRY,PatternScan_PHOSPHOPANTETHEINE,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,PatternScan_ARGINASE_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	(deletion:cds_exon[63901280,63901465])	no_errors	
HLF	3131	genome.wustl.edu	37	17	53398079	53398079	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	53398079	53398079	C	G	SNP	HLF	NM_002126	human	genbank	57_37b	+1	reviewed	missense	c.727	p.R243G	1.000	HMMSmart_SM00338,HMMPfam_bZIP_2	HMMSmart_SM00338,HMMPfam_bZIP_2	-	no_errors	
HTR3E	285242	genome.wustl.edu	37	3	183823579	183823579	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183823579	183823579	C	A	SNP	HTR3E	NM_182589	human	genbank	57_37b	+1	reviewed	silent	c.792	p.L264	0.903	superfamily_Neu_channel_TM	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors	
HYDIN	54768	genome.wustl.edu	37	16	71052178	71052178	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71052178	71052178	G	T	SNP	HYDIN	NM_032821	human	genbank	57_37b	-1	validated	missense	c.3498	p.N1166K	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
IGHMBP2	3508	genome.wustl.edu	37	11	68678969	68678969	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	68678969	68678969	G	A	SNP	IGHMBP2	NM_002180	human	genbank	57_37b	+1	reviewed	silent	c.609	p.A203	0.012	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMSmart_SM00382,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H,HMMSmart_SM00154	-	no_errors	
IMPDH2	3615	genome.wustl.edu	37	3	49062341	49062341	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49062341	49062341	T	C	SNP	IMPDH2	NM_000884	human	genbank	57_37b	-1	reviewed	missense	c.1283	p.N428S	0.998	superfamily_SSF51412,HMMPfam_IMPDH	superfamily_SSF51412,HMMPfam_IMPDH,superfamily_SSF54631,HMMPfam_CBS,HMMSmart_CBS,PatternScan_IMP_DH_GMP_RED	-	no_errors	
IPP	3652	genome.wustl.edu	37	1	46206690	46206690	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46206690	46206690	C	A	SNP	IPP	NM_005897	human	genbank	57_37b	-1	reviewed	missense	c.607	p.A203S	1.000	HMMPfam_BACK	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
ISM2	145501	genome.wustl.edu	37	14	77950743	77950743	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77950743	77950743	T	A	SNP	ISM2	NM_199296	human	genbank	57_37b	-1	reviewed	missense	c.550	p.T184S	0.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00723,HMMPfam_AMOP	-	no_errors	
ITGAX	3687	genome.wustl.edu	37	16	31373464	31373464	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31373464	31373464	T	A	SNP	ITGAX	NM_000887	human	genbank	57_37b	+1	reviewed	missense	c.1155	p.N385K	0.000	superfamily_SSF69318	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
KDM5B	10765	genome.wustl.edu	37	1	202722080	202722080	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202722080	202722080	G	C	SNP	KDM5B	NM_006618	human	genbank	57_37b	-1	validated	missense	c.1654	p.L552V	1.000	HMMSmart_SM00558,HMMPfam_JmjC	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1	-	no_errors	
KIF17	57576	genome.wustl.edu	37	1	20991082	20991082	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	20991082	20991082	G	C	SNP	KIF17	NM_020816	human	genbank	57_37b	-1	validated	missense	c.3085	p.L1029V	1.000	NULL	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
LDB2	9079	genome.wustl.edu	37	4	16587601	16587601	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	16587601	16587601	G	T	SNP	LDB2	NM_001290	human	genbank	57_37b	-1	validated	missense	c.559	p.L187M	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors	
LHCGR	3973	genome.wustl.edu	37	2	48958413	48958413	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48958413	48958413	T	G	SNP	LHCGR	NM_000233	human	genbank	57_37b	-1	reviewed	missense	c.186	p.K62N	1.000	superfamily_L domain-like	superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
LOC100129138	0	genome.wustl.edu	37	1	104615935	104615935	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	104615935	104615935	G	A	SNP	LOC100129138	XR_036957	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.019	-	-	-	no_errors	
LOC121456	121456	genome.wustl.edu	37	12	98850204	98850225	+	RNA	DEL	TTCACCATACCATACCTGAGAT	TTCACCATACCATACCTGAGAT	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	TTCACCATACCATACCTGAGAT	TTCACCATACCATACCTGAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	98850204	98850225	TTCACCATACCATACCTGAGAT	-	DEL	LOC121456	XR_016411	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000:1.000:1.000:0.999:0.990:0.936:0.923:0.916:0.923:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:rna[98849047,98851023])	no_errors	
LOC121456	121456	genome.wustl.edu	37	12	98850204	98850225	+	RNA	DEL	TTCACCATACCATACCTGAGAT	TTCACCATACCATACCTGAGAT	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	TTCACCATACCATACCTGAGAT	TTCACCATACCATACCTGAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	98850204	98850225	TTCACCATACCATACCTGAGAT	-	DEL	LOC121456	XR_016411	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000:1.000:1.000:0.999:0.990:0.936:0.923:0.916:0.923:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:rna[98849047,98851023])	no_errors	
LOC653720	653720	genome.wustl.edu	37	15	28947125	28947125	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	28947125	28947125	G	-	DEL	LOC653720	XM_001724258	human	genbank	57_37b	-1	model	frame_shift_del	c.1874	p.A625fs	0.006	NULL	NULL	(deletion:cds_exon[28947100,28947275])	no_errors	
LOC653720	653720	genome.wustl.edu	37	15	28947125	28947125	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	28947125	28947125	G	-	DEL	LOC653720	XM_001724258	human	genbank	57_37b	-1	model	frame_shift_del	c.1874	p.A625fs	0.006	NULL	NULL	(deletion:cds_exon[28947100,28947275])	no_errors	
MAPK4	5596	genome.wustl.edu	37	18	48252421	48252421	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	48252421	48252421	T	A	SNP	MAPK4	NM_002747	human	genbank	57_37b	+1	reviewed	missense	c.943	p.Y315N	0.997	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAVS	57506	genome.wustl.edu	37	20	3846668	3846668	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3846668	3846668	G	C	SNP	MAVS	NM_020746	human	genbank	57_37b	+1	validated	silent	c.1497	p.R499	0.000	NULL	NULL	-	no_errors	
MGAT4A	11320	genome.wustl.edu	37	2	99279578	99279578	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	99279578	99279578	A	C	SNP	MGAT4A	NM_012214	human	genbank	57_37b	-1	reviewed	silent	c.468	p.L156	0.999	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors	
MTMR4	9110	genome.wustl.edu	37	17	56581186	56581186	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56581186	56581186	C	T	SNP	MTMR4	NM_004687	human	genbank	57_37b	-1	validated	missense	c.1730	p.C577Y	1.000	NULL	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors	
MYCT1	80177	genome.wustl.edu	37	6	153043116	153043116	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	153043116	153043116	C	T	SNP	MYCT1	NM_025107	human	genbank	57_37b	+1	validated	nonsense	c.436	p.R146*	0.999	NULL	NULL	-	no_errors	
MYCT1	80177	genome.wustl.edu	37	6	153043116	153043116	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	153043116	153043116	C	T	SNP	MYCT1	NM_025107	human	genbank	57_37b	+1	validated	nonsense	c.436	p.R146*	0.999	NULL	NULL	-	no_errors	
MYH15	22989	genome.wustl.edu	37	3	108158716	108158716	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108158716	108158716	G	T	SNP	MYH15	NM_014981	human	genbank	57_37b	-1	validated	silent	c.3003	p.I1001	0.004	superfamily_Prefoldin	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat	-	no_errors	
MYO7A	4647	genome.wustl.edu	37	11	76903246	76903246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76903246	76903246	G	A	SNP	MYO7A	NM_000260	human	genbank	57_37b	+1	reviewed	missense	c.4075	p.E1359K	0.997	HMMSmart_SM00295,superfamily_Second domain of FERM	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_FERM_M	-	no_errors	
NARS2	79731	genome.wustl.edu	37	11	78189715	78189715	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78189715	78189715	C	G	SNP	NARS2	NM_024678	human	genbank	57_37b	-1	validated	silent	c.837	p.L279	0.917	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases	superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases	-	no_errors	
NCEH1	57552	genome.wustl.edu	37	3	172428805	172428805	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	172428805	172428805	G	C	SNP	NCEH1	NM_020792	human	genbank	57_37b	-1	validated	missense	c.66	p.C22W	0.000	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER	-	no_errors	
NOL6	65083	genome.wustl.edu	37	9	33464968	33464968	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	33464968	33464968	G	A	SNP	NOL6	NM_022917	human	genbank	57_37b	-1	reviewed	silent	c.2688	p.P896	0.921	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors	
NPPA	4878	genome.wustl.edu	37	1	11907684	11907684	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11907684	11907684	G	C	SNP	NPPA	NM_006172	human	genbank	57_37b	-1	reviewed	missense	c.58	p.L20V	0.123	NULL	HMMPfam_ANP,HMMSmart_NAT_PEP,PatternScan_NATRIURETIC_PEPTIDE	-	no_errors	
ONECUT2	9480	genome.wustl.edu	37	18	55143875	55143875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	55143875	55143875	C	T	SNP	ONECUT2	NM_004852	human	genbank	57_37b	+1	reviewed	missense	c.1435	p.R479C	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors	
OR2G6	391211	genome.wustl.edu	37	1	248685865	248685865	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248685865	248685865	G	T	SNP	OR2G6	NM_001013355	human	genbank	57_37b	+1	validated	silent	c.918	p.L306	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR2T3	343173	genome.wustl.edu	37	1	248637179	248637179	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248637179	248637179	T	A	SNP	OR2T3	NM_001005495	human	genbank	57_37b	+1	provisional	silent	c.528	p.S176	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR5T1	390155	genome.wustl.edu	37	11	56043581	56043581	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56043581	56043581	T	A	SNP	OR5T1	NM_001004745	human	genbank	57_37b	+1	provisional	missense	c.467	p.L156H	0.005	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR6K6	128371	genome.wustl.edu	37	1	158724637	158724637	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158724637	158724637	C	G	SNP	OR6K6	NM_001005184	human	genbank	57_37b	+1	provisional	missense	c.32	p.S11C	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHB2	56133	genome.wustl.edu	37	5	140476160	140476160	+	Missense_Mutation	SNP	G	G	A	rs77771848	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140476160	140476160	G	A	SNP	PCDHB2	NM_018936	human	genbank	57_37b	+1	reviewed	missense	c.1786	p.G596S	0.997	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-		
PHLDB1	23187	genome.wustl.edu	37	11	118498674	118498674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118498674	118498674	C	T	SNP	PHLDB1	NM_001144758	human	genbank	57_37b	+1	validated	missense	c.1135	p.P379S	1.000	NULL	superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
PIGG	54872	genome.wustl.edu	37	4	502620	502620	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	502620	502620	G	C	SNP	PIGG	NM_001127178	human	genbank	57_37b	+1	validated	missense	c.762	p.E254D	0.933	superfamily_Alkaline phosphatase-like	superfamily_Alkaline phosphatase-like	-	no_errors	
PIK3C2G	5288	genome.wustl.edu	37	12	18644449	18644449	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	18644449	18644449	T	A	SNP	PIK3C2G	NM_004570	human	genbank	57_37b	+1	reviewed	missense	c.2627	p.L876H	0.998	superfamily_Protein kinase-like (PK-like)	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMPfam_PI3K_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
PRKAG2	51422	genome.wustl.edu	37	7	151265913	151265913	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151265913	151265913	T	C	SNP	PRKAG2	NM_016203	human	genbank	57_37b	-1	reviewed	silent	c.1122	p.V374	0.995	HMMPfam_CBS,superfamily_CBS-domain,HMMSmart_SM00116	superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors	
PTPRZ1	5803	genome.wustl.edu	37	7	121695092	121695092	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	121695092	121695092	C	G	SNP	PTPRZ1	NM_002851	human	genbank	57_37b	+1	reviewed	missense	c.6479	p.S2160C	0.998	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
QPCTL	54814	genome.wustl.edu	37	19	46196814	46196814	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46196814	46196814	G	A	SNP	QPCTL	NM_017659	human	genbank	57_37b	+1	validated	silent	c.351	p.K117	1.000	superfamily_SSF53187	superfamily_SSF53187,HMMPfam_Peptidase_M28	-	no_errors	
RAI1	10743	genome.wustl.edu	37	17	17697094	17697105	+	In_Frame_Del	DEL	CAGCAGCAGCAG	CAGCAGCAGCAG	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	CAGCAGCAGCAG	CAGCAGCAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	17697094	17697105	CAGCAGCAGCAG	-	DEL	RAI1	NM_030665	human	genbank	57_37b	+1	reviewed	in_frame_del	c.832_843	p.QQQQ281in_frame_del	0.831:0.157:0.050:0.791:0.897:0.891:0.907:0.973:0.993:1.000:1.000:1.000	NULL	HMMSmart_SM00249	(deletion:cds_exon[17696263,17701827])	no_errors	
RASL11B	65997	genome.wustl.edu	37	4	53731706	53731706	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	53731706	53731706	C	G	SNP	RASL11B	NM_023940	human	genbank	57_37b	+1	provisional	missense	c.481	p.Q161E	1.000	superfamily_SSF52540	superfamily_SSF52540,HMMPfam_Miro	-	no_errors	
RFX1	5989	genome.wustl.edu	37	19	14076329	14076329	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14076329	14076329	C	G	SNP	RFX1	NM_002918	human	genbank	57_37b	-1	validated	missense	c.2143	p.A715P	1.000	NULL	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	
RTN4RL1	146760	genome.wustl.edu	37	17	1840864	1840864	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1840864	1840864	G	C	SNP	RTN4RL1	NM_178568	human	genbank	57_37b	-1	validated	nonsense	c.252	p.Y84*	1.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors	
SALL1	6299	genome.wustl.edu	37	16	51172798	51172798	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	51172798	51172798	G	-	DEL	SALL1	NM_002968	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3335	p.P1112fs	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	(deletion:cds_exon[51172599,51176056])	no_errors	
SALL1	6299	genome.wustl.edu	37	16	51172798	51172798	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	51172798	51172798	G	-	DEL	SALL1	NM_002968	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3335	p.P1112fs	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	(deletion:cds_exon[51172599,51176056])	no_errors	
SALL1	6299	genome.wustl.edu	37	16	51172800	51172800	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	51172800	51172800	C	T	SNP	SALL1	NM_002968	human	genbank	57_37b	-1	reviewed	silent	c.3333	p.G1111	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
SATL1	340562	genome.wustl.edu	37	X	84349172	84349172	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	84349172	84349172	A	T	SNP	SATL1	NM_001012980	human	genbank	57_37b	-1	validated	missense	c.1277	p.L426H	1.000	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase	-	no_errors	
SLC26A3	1811	genome.wustl.edu	37	7	107427288	107427288	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107427288	107427288	C	A	SNP	SLC26A3	NM_000111	human	genbank	57_37b	-1	reviewed	missense	c.955	p.G319W	1.000	HMMPfam_Sulfate_transp	PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS	-	no_errors	
SLC27A3	11000	genome.wustl.edu	37	1	153748207	153748207	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153748207	153748207	C	-	DEL	SLC27A3	NM_024330	human	genbank	57_37b	+1	provisional	frame_shift_del	c.375	p.A126fs	0.002	superfamily_Acetyl-CoA synthetase-like	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	(deletion:cds_exon[153747833,153748640])	no_errors	
SMTNL1	219537	genome.wustl.edu	37	11	57314020	57314020	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57314020	57314020	C	A	SNP	SMTNL1	NM_001105565	human	genbank	57_37b	+1	provisional	missense	c.1289	p.A430D	1.000	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	-	no_errors	
SPATA16	83893	genome.wustl.edu	37	3	172835390	172835390	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	172835390	172835390	T	A	SNP	SPATA16	NM_031955	human	genbank	57_37b	-1	validated	silent	c.132	p.S44	0.000	NULL	superfamily_TPR-like	-	no_errors	
SRRT	51593	genome.wustl.edu	37	7	100479395	100479395	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100479395	100479395	A	T	SNP	SRRT	NM_015908	human	genbank	57_37b	+1	validated	missense	c.367	p.M123L	1.000	NULL	HMMPfam_ARS2	-	no_errors	
STRN4	29888	genome.wustl.edu	37	19	47240084	47240084	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47240084	47240084	G	A	SNP	STRN4	NM_001039877	human	genbank	57_37b	-1	validated	nonsense	c.535	p.R179*	1.000	HMMPfam_Striatin	HMMPfam_Striatin,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
STRN4	29888	genome.wustl.edu	37	19	47240084	47240084	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47240084	47240084	G	A	SNP	STRN4	NM_001039877	human	genbank	57_37b	-1	validated	nonsense	c.535	p.R179*	1.000	HMMPfam_Striatin	HMMPfam_Striatin,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
SYNPO2	171024	genome.wustl.edu	37	4	119948056	119948056	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	119948056	119948056	G	A	SNP	SYNPO2	NM_133477	human	genbank	57_37b	+1	validated	missense	c.532	p.V178M	0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
TBC1D25	4943	genome.wustl.edu	37	X	48418941	48418941	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48418941	48418941	C	G	SNP	TBC1D25	NM_002536	human	genbank	57_37b	+1	validated	missense	c.1645	p.P549A	0.157	superfamily_Ypt/Rab-GAP domain of gyp1p	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors	
TMEM143	55260	genome.wustl.edu	37	19	48848500	48848500	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48848500	48848500	G	A	SNP	TMEM143	NM_018273	human	genbank	57_37b	-1	provisional	silent	c.481	p.L161	1.000	NULL	NULL	-	no_errors	
TMIGD2	126259	genome.wustl.edu	37	19	4298081	4298081	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4298081	4298081	C	A	SNP	TMIGD2	NM_144615	human	genbank	57_37b	-1	validated	missense	c.308	p.S103I	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors	
TNC	3371	genome.wustl.edu	37	9	117798505	117798505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117798505	117798505	C	T	SNP	TNC	NM_002160	human	genbank	57_37b	-1	validated	missense	c.5528	p.R1843H	0.534	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,HMMPfam_EGF,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578467	7578467	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578467	7578467	T	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.463	p.T155P	0.003	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TREH	11181	genome.wustl.edu	37	11	118533617	118533617	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118533617	118533617	A	T	SNP	TREH	ENST00000264029	human	ensembl	57_37b	-1	known	missense	c.396	p.H132Q	0.943	HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases	HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases,PatternScan_TREHALASE_1,PatternScan_TREHALASE_2	-	no_errors	
TRERF1	55809	genome.wustl.edu	37	6	42224823	42224823	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42224823	42224823	A	T	SNP	TRERF1	NM_033502	human	genbank	57_37b	-1	reviewed	nonsense	c.2354	p.L785*	0.997	HMMPfam_ELM2	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
TRERF1	55809	genome.wustl.edu	37	6	42224823	42224823	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42224823	42224823	A	T	SNP	TRERF1	NM_033502	human	genbank	57_37b	-1	reviewed	nonsense	c.2354	p.L785*	0.997	HMMPfam_ELM2	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
TRIM46	80128	genome.wustl.edu	37	1	155152365	155152365	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155152365	155152365	G	T	SNP	TRIM46	NM_025058	human	genbank	57_37b	+1	validated	missense	c.1543	p.G515C	1.000	HMMPfam_fn3,superfamily_Fibronectin type III	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
TRNAU1AP	54952	genome.wustl.edu	37	1	28904895	28904896	+	RNA	INS	-	-	ACTT	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-11A-21W-A100-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28904895	28904896	-	ACTT	INS	TRNAU1AP	NR_003109	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.005:0.001	-	-	-	no_errors	
TRPV2	51393	genome.wustl.edu	37	17	16335509	16335509	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16335509	16335509	C	A	SNP	TRPV2	NM_016113	human	genbank	57_37b	+1	reviewed	silent	c.1884	p.A628	0.712	HMMPfam_Ion_trans	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_Ion_trans	-	no_errors	
TSHZ3	57616	genome.wustl.edu	37	19	31767507	31767507	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	31767507	31767507	G	A	SNP	TSHZ3	NM_020856	human	genbank	57_37b	-1	validated	silent	c.3192	p.H1064	0.998	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179641483	179641483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179641483	179641483	G	A	SNP	TTN	NM_133379	human	genbank	57_37b	-1	reviewed	missense	c.5108	p.P1703L	1.000	superfamily_SSF48726,HMMPfam_I-set	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors	
VCAN	1462	genome.wustl.edu	37	5	82843850	82843850	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	82843850	82843850	A	C	SNP	VCAN	NM_004385	human	genbank	57_37b	+1	reviewed	missense	c.9440	p.N3147T	0.991	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
ZFPL1	7542	genome.wustl.edu	37	11	64853916	64853916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64853916	64853916	C	T	SNP	ZFPL1	NM_006782	human	genbank	57_37b	+1	validated	missense	c.244	p.R82C	1.000	HMMSmart_RING	PatternScan_ZF_RING_1,HMMSmart_RING	-	no_errors	
ZZEF1	23140	genome.wustl.edu	37	17	3954156	3954156	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0CE-01A-11W-A019-09	TCGA-A7-A0CE-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3954156	3954156	T	C	SNP	ZZEF1	NM_015113	human	genbank	57_37b	-1	validated	missense	c.5782	p.T1928A	0.103	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,superfamily_Galactose-binding domain-like,HMMPfam_APC10,superfamily_Spermadhesin CUB domain,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors	
